cluster # 883

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Schistosoma mansoni
cluster # 883 cluster # 883 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_883#0 length = 345 sequences # 1

consensus_883#1 length = 301 sequences # 1

consensusID : consensus_883#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 345
fasta sequence

                              [TAAACATTTTATGTAGAAAAAAACTAATCATAACAGTAAAGAAATAATCCGTACAATTACAATCATTAGATCTTCTGACAAATACTTGTTCATAATTAATATAAAATAAAATTAATAGGGGAATTGGAAAACAATAATCTTAAGTTATTTTAAATGTTATTACCCTTAAAAAATATTGGATAACGTAACAATATTAGTAATAATCTAGAATAGGTAACAAAAATTTTAAAAGACTATCGTTTTTACAATTAAAAAATATATAATTACAGTGAGATGAAATATATAATAACACTATAAATTAGCGAAATGACCACTGGAAATATTCTGTTAAACTTTAGACCGGAA]

[+] EMBL AI976433             [TAAACATTTTATGTAGAAAAAAACTAATCATAACAGTAAAGAAATAATCCGTACAATTACAATCATTAGATCTTCTGACAAATACTTGTTCATAATTAATATAAAATAAAATTAATAGGGGAATTGGAAAACAATAATCTTAAGTTATTTTAAATGTTATTACCCTTAAAAAATATTGGATAACGTAACAATATTAGTAATAATCTAGAATAGGTAACAAAAATTTTAAAAGACTATCGTTTTTACAATTAAAAAATATATAATTACAGTGAGATGAAATATATAATAACACTATAAATTAGCGAAATGACCACTGGAAATATTCTGTTAAACTTTAGACCGGAA]




>consensus_883#0
TAAACATTTTATGTAGAAAAAAACTAATCATAACAGTAAAGAAATAATCCGTACAATTAC
AATCATTAGATCTTCTGACAAATACTTGTTCATAATTAATATAAAATAAAATTAATAGGG
GAATTGGAAAACAATAATCTTAAGTTATTTTAAATGTTATTACCCTTAAAAAATATTGGA
TAACGTAACAATATTAGTAATAATCTAGAATAGGTAACAAAAATTTTAAAAGACTATCGT
TTTTACAATTAAAAAATATATAATTACAGTGAGATGAAATATATAATAACACTATAAATT
AGCGAAATGACCACTGGAAATATTCTGTTAAACTTTAGACCGGAA

consensusID : consensus_883#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 301
fasta sequence

                              [TAACCTTTTGTGGAAAAAAACATGGCATATACGCTTGAGATATATTCCGTCAAATTACAATCATTAGATTTTGTGGGAAATCCTTGTCACATAATTATTTAAAATAAATTTAGGGGGGAATTGGAAACAATAATCTTAAGTTATTTTAAATGTTAATTACCCTTAAAAATATTGGATAACGTTAACAATATCAGTAATAATTCAGAAGAGGTAACAAAAATATTAAAAGACTATCGATTTTACAATTAAAAAATATATAAATACAATGAGATGAAATAATAATAACACTATAAATTAGCGA]

[-] EMBL AW018293             [TAACCTTTTGTGGAAAAAAACATGGCATATACGCTTGAGATATATTCCGTCAAATTACAATCATTAGATTTTGTGGGAAATCCTTGTCACATAATTATTTAAAATAAATTTAGGGGGGAATTGGAAACAATAATCTTAAGTTATTTTAAATGTTAATTACCCTTAAAAATATTGGATAACGTTAACAATATCAGTAATAATTCAGAAGAGGTAACAAAAATATTAAAAGACTATCGATTTTACAATTAAAAAATATATAAATACAATGAGATGAAATAATAATAACACTATAAATTAGCGA]




>consensus_883#1
TAACCTTTTGTGGAAAAAAACATGGCATATACGCTTGAGATATATTCCGTCAAATTACAA
TCATTAGATTTTGTGGGAAATCCTTGTCACATAATTATTTAAAATAAATTTAGGGGGGAA
TTGGAAACAATAATCTTAAGTTATTTTAAATGTTAATTACCCTTAAAAATATTGGATAAC
GTTAACAATATCAGTAATAATTCAGAAGAGGTAACAAAAATATTAAAAGACTATCGATTT
TACAATTAAAAAATATATAAATACAATGAGATGAAATAATAATAACACTATAAATTAGCG
A

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_883#0      TAAACATTTTATGTAGAAAAAAACTAATCATA-ACAGTAAAGAAATAATCCGTACAATTA 59
consensus_883#1      ---TAACCTTTTGTGGAAAAAAACATGGCATATACGCTTGAGATATATTCCGTCAAATTA 57
                          *  ** *** *********    **** **  *  *** *** *****  *****

consensus_883#0      CAATCATTAGATCTTCTGACAAATACTTGTT-CATAATTAATATAAAATAAAATTAATAG 118
consensus_883#1      CAATCATTAGATTTTGTGGGAAATCCTTGTCACATAATTA-TTTAAAATAAATTTAG-GG 115
                     ************ ** **  **** *****  ******** * ********* ***   *

consensus_883#0      GGGAATTGGAAAACAATAATCTTAAGTTATTTTAAATGTTATTACCCTTAAAAAATATTG 178
consensus_883#1      GGGAATTGGAAA-CAATAATCTTAAGTTATTTTAAATGTTAATTACCCTTAAAAATATTG 174
                     ************ **************************** *  ** * **********

consensus_883#0      GATAACGT-AACAATATTAGTAATAATCTAGAATAGGTAACAAAAATTTTAAAAGACTAT 237
consensus_883#1      GATAACGTTAACAATATCAGTAATAATTCAGAAGAGGTAACAAAAATATTAAAAGACTAT 234
                     ******** ******** *********  **** ************* ************

consensus_883#0      CGTTTTTACAATTAAAAAATATATAATTACAGTGAGATGAAATATATAATAACACTATAA 297
consensus_883#1      CGATTTTACAATTAAAAAATATATAAATACAATGAGATGAAATA-ATAATAACACTATAA 293
                     ** *********************** **** ************ ***************

consensus_883#0      ATTAGCGAAATGACCACTGGAAATATTCTGTTAAACTTTAGACCGGAA 345
consensus_883#1      ATTAGCGA---------------------------------------- 301
                     ********