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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8844#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 784 fasta sequence
[AAATATGAACCGGGTGTATTGAATAATTCGCTATGCCATTTTTTTAGACTTTCTCAAGAAATGAATAACGACGACGTAATATGGCACACTATCAACCATTCATTCTGTTCTTTTGTTGTCAAAACTAAAACAGGAAGGTTTTGCAGAAATGATGACAATGTGACAGGATTGTGTAATAGACATTCTTGCCCATTAGCTAACTCACAGTATGCCACTATAAAAGAAAGAGATGGTATCATCTACTTGTTTGTGAAGGAACCTGAACGCATACCTTATCCTGGTAAACAATGGGAGCGGATTAAA-TTGCGCCGAAATAAAGATCAAGCTCTAAAACAA-ATCAAAGAGCACTTACTGTATTGGGATAAATGGATAATAAGCCGTGTTAAGCAGAGATTCTTCCGTACAAGAGAATATCTTAAAAATATGCGACGTTTAGCCTTATCAAGACAAAAGAAGTTGGAACCTATTAATCGTACGGTTGAAAAACGTGAATTAAGAAGAGAAGCTAAAGCATTACGTGTAGCACGCATCGAACGTACTGTAGAACAAGAACTCTTAGAAAGATTACG-CGCATCAACATCTTCCAAGGAAATATATAACATAGATCAGTCTGCCTTTGAAAAGGCTCTAGAAGCTGAAGAAATAAATGAAGAATCTGATGAGGAATACGAGGAGGATGAAGAAGAAATCGTCTACACTTCAGGATCTGATGTTGAAGACATTGAGGATATCGGAGTGATTGATGAAGAAAGTGAAGAAGAGGAAGCTGAACATAATCTTGTCC]
[+] EMBL CD201721 [AAATATGAACCGGGTGTATTGAATAATTCGCTATGCCATTTTTTTAGACTTTCTCAAGAAATGAATAACGACGACGTAATATGGCACACTATCAACCATTCATTCTGTTCTTTTGTTGTCAAAACTAAAACAGGAAGGTTTTGCAGAAATGATGACAATGTGACAGGATTGTGTAATAGACATTCTTGCCCATTAGCTAACTCACAGTATGCCACTATAAAAGAAAGAGATGGTATCATCTACTTGTTTGTGAAGGAACCTGAACGCATACCTTA ]
[+] EMBL SMGST [ TTTTGCAGAAATGATGACAATGTGACAGGATTGTGTAATAGACATTCTTGCCCATTAGCTAACTCACAGTATGCCACTATAAAAGAAAGAGATGGTATCATCTACTTGTTTGTGAAGGAACCTGAACGCATACCTTATCCTGGTAAACAATGGGAGCGGATTAAA TTGCGCCGAAATAAAGATCAAGCTCTAAAACAA ATCAAAGAGCACTTACTGTATTGGGATAAATGGATAATAAGCCGTGTTAAGCAGAGATTCTTCCGTACAAGAGAATATCTTAAAAATATGCGACGTTTAGCCTTATCAAGACAAAAGAAGTTGGAACCTATTAATCGTACGGTTGAAAAACGTGAATTAAGAAGAGAAGCTAAAGCATTACGTGTAGCACGCATCGAACGTACTGTAGAACAAGAACTCTTAGAAAGATTACG CGCATCAACATCTTCCAAGGAAATATATAACATAGATCAGTCTGCCTTTGAAAAGGCTCTAGAAGCTGAAGAAATAAATGAAGAATCTGATGAGGAATACGAGGAGGATGAAGAAGAAATCGTCTACACTTCAGGATCTGATGTTGAAGACATTGAGGATATCGGAGTGATTGATGAAGAAAGTGAAGAAGAGGAAGCTGAACATAATCTTGTC ]
[-] EMBL CD147713 [ AAGAGATGGTATCATCTACTGATTTGTGAAGGAACCTGAACGCATACCTTATCCTGGT AACGATGGGAGCGGATTAAACTTGCGCCGAAATAAAGATCAAGCTGTTAAACAAGATCAAAGAGCACTTACTGTATTGGGATAAATGGATAATAAGCCGTGTGAAGCAGAGATTCTTCCGTACAAGAGAATATCTTAAAAATATGCGACGTTTAGCCTTATCAAGACAAAAGAAGTTGGAACCTATTAATCGTACGGTTGACAAACGTGAATTAAGAAGAGAAGCTAAAGCATTACGTGTAGCACGCATCGAACGTACTGTAGAACAAGAACTCTTAGAAAGATTACGCCGCATCAACATCTTCCAAGGAAATATATAACATAGATCAGTCTGCCTTTGAAAAGGCTCTAGAAGCTGA ]
[-] EMBL CD073152 [ GAGCGGATTAAA TTGCGCCGAAATAAAGATCAAGCTCTAAAACAA ATCAAAGAGCACTTACTGTATTGGGATAAATGGATAATAAGCCGTGTTAAGCAGAGATTCTTCCGTACAAGAGAATATCTTAAAAATATGCGACGTTTAGCCTTATCAAGACAAAAGAAGTTGGAACCTATTAATCGTACGGTTGAAAAACGTGAATTAAGAAGAGAAGCTAAAGCATTACGTGTAGCACGCATCGAACGTACTGTAGAACAAGAACTCTTAGAAAGATTACG CGCATCAACATCTTCCAAGGAAATATATAACATAGATCAGTCTGCCTTTGAAAAGGCTCTAGAAGCTGAAGAAATAAATGAAGAATCTGATGAGGAATACGAGGAGGATGAAGAAGAAATCGTCTACACTTCAGGATCTGATGTTGAAGACATTGAGGATATCGGAGTGATTGATGAAGAAAGTGAAGAAGAGGAAGCTGAACATAATCTTGTCC]
[-] EMBL CD077278 [ GTTGAAAAACGTGAATTAAGAAGAGAAGCTAAAGCATTACGTGTAGCACGCATCGAACGTACTGTAGAACAAGAACTCTTAGAAAGATTACG CGCATCAACATCTTCCAAGGAAATATATAACATAGATCAGTCTGCCTTTGAAAAGGCTCTAGAAGCTGAAGAAATAAATGAAGAATCTGATGAGGAATACGAGGAGGATGAAGAAGAAATCGTCTACACTTCAGGATCTGATGTTGAAGACATTGAGGATATCGGAGTGATTGATGAAGAAAGTGAAGAAGAGGAAGCTGAACATAATCTTGTCC]
consensusID : consensus_8844#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 622 fasta sequence
[TAATTCGCTATGACTTTCTCAAGAAATGAATAACGACGACGTAATATGGCACACTATCAACCATTCATTCTGTTCTTTTGTTGTCAAAACTAAAACAGGAAGGTTTTGCAGAAATGATGACAATGTGACAGGATTGTGTAATAGACATTCTTGCCCATTAGCTAACTCACAGTATGCCACTATAAAAGAAAGAGATGGTATCATCTACTTGTTTGTGAAGGAACCTGAACGCATACCTTATCCTGGTAAACAATGGGAGCGGATTAAATTGCGCCGAAATAAAGATCAAGCTCTAAAACAAATCAAAGAGCACTTACTGTATTGGGATAAATGGATAATAAGCCGTGTTAAGCAGAGATTCTTCCGTACAAGAGAATATCTTAAAAATATGCGACGTTTAGCCTTATCAAGACAAAAGAAGTTGGAACCTATTAATCGTACGGTTGAAAAACGTGAATTAAGAAGAGAAGCTAAAGCATTACGTGTAGCACGCATCGAACGTACTGTAGAACAAGAACTCTTAGAAAGATTACGCGCATCAACATCTTCCAAGGAAATATATAACATAGATCAGTCTGCCTTTGAAAGGCTCTAGAAGCTGAAGAATAAATGAAGAATCTGA]
[+] EMBL CD078689 [TAATTCGCTATGACTTTCTCAAGAAATGAATAACGACGACGTAATATGGCACACTATCAACCATTCATTCTGTTCTTTTGTTGTCAAAACTAAAACAGGAAGGTTTTGCAGAAATGATGACAATGTGACAGGATTGTGTAATAGACATTCTTGCCCATTAGCTAACTCACAGTATGCCACTATAAAAGAAAGAGATGGTATCATCTACTTGTTTGTGAAGGAACCTGAACGCATACCTTATCCTGGTAAACAATGGGAGCGGATTAAATTGCGCCGAAATAAAGATCAAGCTCTAAAACAAATCAAAGAGCACTTACTGTATTGGGATAAATGGATAATAAGCCGTGTTAAGCAGAGATTCTTCCGTACAAGAGAATATCTTAAAAATATGCGACGTTTAGCCTTATCAAGACAAAAGAAGTTGGAACCTATTAATCGTACGGTTGAAAAACGTGAATTAAGAAGAGAAGCTAAAGCATTACGTGTAGCACGCATCGAACGTACTGTAGAACAAGAACTCTTAGAAAGATTACGCGCATCAACATCTTCCAAGGAAATATATAACATAGATCAGTCTGCCTTTGAAAGGCTCTAGAAGCTGAAGAATAAATGAAGAATCTGA]
consensusID : consensus_8844#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 413 fasta sequence
[ACTTTCTCAAGAAATGAATAACGACGACGTAATATGGCACACTATCAACCATTCATTCTGTTCTTTTGTTGTCAAAACTAAAACAGGAAGGTTTTGCAGAAATGATGACAATGTGACAGGATTGTGTAATAGACATTCTTGCCCATTAGCTAACTCACAGTATGCCACTATAAAGAAAGAGATGGTATCATCTACTTGTTTGTGAAGGAACCTGAACGCATACCTTATCCTGGTAAACATGGGAGCGGATTAATTGCGCGAATAATGATCAGCTCTAAACAATCAAGAGCACTACTGTATGGGATAATGATAATAGCCGTGTAAGCAGGATTCTCCGTACAAGAGATACTAAAATAGCGACGTTTAGCTTATCAGACAAAGAGTGGACTATTATCGTACGTTGAAACGTGATT]
[+] EMBL AI168858 [ACTTTCTCAAGAAATGAATAACGACGACGTAATATGGCACACTATCAACCATTCATTCTGTTCTTTTGTTGTCAAAACTAAAACAGGAAGGTTTTGCAGAAATGATGACAATGTGACAGGATTGTGTAATAGACATTCTTGCCCATTAGCTAACTCACAGTATGCCACTATAAAGAAAGAGATGGTATCATCTACTTGTTTGTGAAGGAACCTGAACGCATACCTTATCCTGGTAAACATGGGAGCGGATTAATTGCGCGAATAATGATCAGCTCTAAACAATCAAGAGCACTACTGTATGGGATAATGATAATAGCCGTGTAAGCAGGATTCTCCGTACAAGAGATACTAAAATAGCGACGTTTAGCTTATCAGACAAAGAGTGGACTATTATCGTACGTTGAAACGTGATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8844#0 AAATATGAACCGGGTGTATTGAATAATTCGCTATGCCATTTTTTTAGACTTTCTCAAGAA 60
consensus_8844#1 -----------------------------------TAATTCGCTATGACTTTCTCAAGAA 25
consensus_8844#2 -----------------------------------------------ACTTTCTCAAGAA 13
*************
consensus_8844#0 ATGAATAACGACGACGTAATATGGCACACTATCAACCATTCATTCTGTTCTTTTGTTGTC 120
consensus_8844#1 ATGAATAACGACGACGTAATATGGCACACTATCAACCATTCATTCTGTTCTTTTGTTGTC 85
consensus_8844#2 ATGAATAACGACGACGTAATATGGCACACTATCAACCATTCATTCTGTTCTTTTGTTGTC 73
************************************************************
consensus_8844#0 AAAACTAAAACAGGAAGGTTTTGCAGAAATGATGACAATGTGACAGGATTGTGTAATAGA 180
consensus_8844#1 AAAACTAAAACAGGAAGGTTTTGCAGAAATGATGACAATGTGACAGGATTGTGTAATAGA 145
consensus_8844#2 AAAACTAAAACAGGAAGGTTTTGCAGAAATGATGACAATGTGACAGGATTGTGTAATAGA 133
************************************************************
consensus_8844#0 CATTCTTGCCCATTAGCTAACTCACAGTATGCCACTATAAAAGAAAGAGATGGTATCATC 240
consensus_8844#1 CATTCTTGCCCATTAGCTAACTCACAGTATGCCACTATAAAAGAAAGAGATGGTATCATC 205
consensus_8844#2 CATTCTTGCCCATTAGCTAACTCACAGTATGCCACTATAAA-GAAAGAGATGGTATCATC 192
***************************************** ******************
consensus_8844#0 TACTTGTTTGTGAAGGAACCTGAACGCATACCTTATCCTGGTAAACAATGGGAGCGGATT 300
consensus_8844#1 TACTTGTTTGTGAAGGAACCTGAACGCATACCTTATCCTGGTAAACAATGGGAGCGGATT 265
consensus_8844#2 TACTTGTTTGTGAAGGAACCTGAACGCATACCTTATCCTGGTAAACA-TGGGAGCGGATT 251
*********************************************** ************
consensus_8844#0 AAATTGCGCCGAAATAAAGATCAAGCTCTAAAACAAATCAAAGAGCACTTACTGTATTGG 360
consensus_8844#1 AAATTGCGCCGAAATAAAGATCAAGCTCTAAAACAAATCAAAGAGCACTTACTGTATTGG 325
consensus_8844#2 AA-TTGCGC--GAATAATGATCA-GCTCTAAAC--AATCAA-GAGCACT-ACTGTAT-GG 302
** ****** ***** ***** ******** ****** ******* ******* **
consensus_8844#0 GATAAATGGATAATAAGCCGTGTTAAGCAGAGATTCTTCCGTACAAGAGAATATCTTAAA 420
consensus_8844#1 GATAAATGGATAATAAGCCGTGTTAAGCAGAGATTCTTCCGTACAAGAGAATATCTTAAA 385
consensus_8844#2 GATAA--TGATAATA-GCCGTGT-AAGCAG-GATTCT-CCGTACAAGAGA-TACT---AA 352
***** ******* ******* ****** ****** ************ ** **
consensus_8844#0 AATATGCGACGTTTAGCCTTATCAAGACAAAAGAAGTTGGAACCTATTAATCGTACGGTT 480
consensus_8844#1 AATATGCGACGTTTAGCCTTATCAAGACAAAAGAAGTTGGAACCTATTAATCGTACGGTT 445
consensus_8844#2 AATA-GCGACGTTTAGC-TTATCA-GACAAAGAG---TGGA--CTATTA-TCGTACGTT- 402
**** ************ ****** ****** **** ****** ******* *
consensus_8844#0 GAAAAACGTGAATTAAGAAGAGAAGCTAAAGCATTACGTGTAGCACGCATCGAACGTACT 540
consensus_8844#1 GAAAAACGTGAATTAAGAAGAGAAGCTAAAGCATTACGTGTAGCACGCATCGAACGTACT 505
consensus_8844#2 --GAAACGTGATT----------------------------------------------- 413
******** *
consensus_8844#0 GTAGAACAAGAACTCTTAGAAAGATTACGCGCATCAACATCTTCCAAGGAAATATATAAC 600
consensus_8844#1 GTAGAACAAGAACTCTTAGAAAGATTACGCGCATCAACATCTTCCAAGGAAATATATAAC 565
consensus_8844#2 ------------------------------------------------------------
consensus_8844#0 ATAGATCAGTCTGCCTTTGAAAAGGCTCTAGAAGCTGAAGAAATAAATGAAGAATCTGAT 660
consensus_8844#1 ATAGATCAGTCTGCCTTTGAAA-GGCTCTAGAAGCTGAAGAA-TAAATGAAGAATCTGA- 622
consensus_8844#2 ------------------------------------------------------------
consensus_8844#0 GAGGAATACGAGGAGGATGAAGAAGAAATCGTCTACACTTCAGGATCTGATGTTGAAGAC 720
consensus_8844#1 ------------------------------------------------------------
consensus_8844#2 ------------------------------------------------------------
consensus_8844#0 ATTGAGGATATCGGAGTGATTGATGAAGAAAGTGAAGAAGAGGAAGCTGAACATAATCTT 780
consensus_8844#1 ------------------------------------------------------------
consensus_8844#2 ------------------------------------------------------------
consensus_8844#0 GTCC 784
consensus_8844#1 ----
consensus_8844#2 ----
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||