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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8873#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1015 fasta sequence
[CGAGGAGAACCNTTAAGAAACATTCAAGCGTTCAGATAAAGACTTCTCATATTCACCTTACGAAGATTCGCTGACTTACATGGAGACTTGTATTTAAGTATGAATATTATTTCCAACTTATATATAATACTTTCTACTGTTTAAAGTAGCATTTAATATTCCTTTATTAATTTCCTGTTGACTAAACTTTACAATATCCCCTTCAGATATAGTAGCTGTTTTGTGTCCAAACGGACCATTGCGATTGCTTGTAGAAATGGCTCATGAACGACAACAACCTCTTTTCCCTGCCCTTCTATATTCAACTACTACAGTTTATCTTGTCAAAAAACATCAACCAGTTGAGAAAGTTGAAAATGATCAACAATTTGTTGGATCCACTATTACATGTTCTGTTGATG-CTCGGAATGAAGCGTTAAATATTAATTGTACTACACAACCTTGTCCTACTACATCGGAGTTGGTAGCTTCAGATAACAGTAACCAGCCGATGACAGGGAATTCAAGAAACATGTTAAATATTCCTAATAATACGTCCCGAACCGATGCAATTGTAGTTGATACTCCTGATGACAATACGATTAATAATGATGCCAGGAATAACAATGAAACTATATCACAGGCACCTCATGAAACAGATACACTTGTAGCAGGCCGACCCAATCGTTGGCAAGAACTGCAAGCAGATTTAATTGATCGTGACTCAAAGGGTGTAAAACTTGGTTTAGGCGATTTTGTATTTTATAGTTTACTGATTGGTCGTGCAACACTTGATGGCGATGCAGTCACTGTGGTCACATGTTATGTGGCTATATTGGTTGGAATGTGTATTACTGTTATAGTATTGGGAATTACACGACAAGCATTACCAGCTTTACCAATAT-CCATAACATGTGGTATATTATTTTATTTTGTCAGTTCAGCGACGATATCACCGTTTCTTGAAGCAACAGCCATTGAACGTGTGTTCTTCTGACGTGATTTGTTATTATTATTATTGGCACTACTGCTGGTA]
[+] EMBL CD083490 [CGAGGAGAACCNTTAAGAAACATTCAAGCGTTCAGATAAAGACTTCTCATATTCACCTTACGAAGATTCGCTGACTTACATGGAGACTTGTATTTAAGTATGAATATTATTTCCAACTTATATATAATACTTTCTACTGTTTAAAGTAGCATTTAATATTCCTTTATTAATTTCCTGTTGACTAAACTTTACAATATCCCCTTCAGATATAGTAGCTGTTTTGTGTCCAAACGGACCATTGCGATTGCTTGTAGAAATGGCTCATGAACGACAACAACCTCTTTTCCCTGCCCTTCTATATTCAACTACTACAGTTTATCTTGTCAAAAAACATCAACCAGTTGAGAAAGTTGAAAATGATCAACAATTTGTTGGATCCACTATTACATGTTCTGTTGATG CTCGGAATGAAGCGTTCAATATTAATTGTAC ]
[+] EMBL AI975562 [ TTCAACTACTACAGTTTATCTTGTCAAAAAACATCAACCAGTTGAGAAAGTTGAAGATGATCAACAGTTTGTTGGATCCACTATTACATGTTCTGTTGATG CTCGGAATGAAGCGTTAAATATTAATTGTACTACACAACCTTGTTCTACTACATCGGAGTTGGTAGCTTCAGATAACAGTTACCACCCGATGACAGGGAATTCAAGAAACATGTTAAATATTCCTAATAATACGTCCCGAACCGATGCAATTGTAGTTGATACTCCTGATGACAGTACGATTAATAATGATGCCAGGAATAACAATGAAACTATATCACAGGCACCTCATGAAACAGATACACTTGTAGCAGGCCGACCCAATCGTTGGCAAGAACTGCAAGCAGATTTAATTGATCGTGACTCAAAGGGTGTAAAACTTGGTTTAGGCGATTTTGTATTTTATAGTTTACTGATTGGTCGTGCAACACTTGATGGCGATGCAGTCACTGTGGTCACATGTTATGTGGC ]
[+] EMBL AI975474 [ TTCAACTACTACAGTTTATCTTGTCAAAAAACATCAACCAGTTGAGAAAGTTGAAAATGATCAACAATTTGTTGGATCCACTATTACATGTTCTGTTGATG CTCGGAATGAAGCGTTAAATATTAATTGTACTACACAACCTTGTCCTACTACATCGGAGTTGGTAGCTTCAGATAACAGTAACCAGCCGATGACAGGGAATTCAAGAAACATGTTAAATATTCCTAATAATACGTCCCGAACCGATGCAATTGTAGTTGATACTCCTGATGACAATACGATTAATAATGATGCCAGGAATAACAATGAAACTATATCACAGGCACCTCATGAAACAGATACACTTGTAGCAGGCCGACCCAATCGTTGGCAAGAACTGCAAGCAGATTTAATTGATCGTGACTCAAAGGGTGTAAAACTTGGTTTAGGCGATTTTGTATTTTATAGTT ]
[+] EMBL BF936333 [ TTCAACTACTACAGTTTATCTTGTCAAAAAACATCAACCAGTTGAGAAAGTTGAAAATGATCAACAATTTGTTGGATCCACTATTACATGTTCTGTTGATG CTCGGAATGAAGCGTTAAATATTAATTGTACTACACAACCTTGTCCTACTACATCGGAGTTGGTAGCTTCAGATAACAGTAACCAGCCGATGACAGGGAATTCAAGAAACATGTTAAATATTCCTAATAATACGTCCCGAACCGATGCAATTGTAGTTGATACTCCTGATGACAATACGATTAATAATGATGCCAGGAATAACAATGAAACTATATCACAGGCACCTCATGAAA ]
[+] EMBL BF936705 [ GTTGAGAAAGTTGAAAATGATCAACAATTTGTTGGATCCACTATTACATGTTCTGTTGATGCCTCGGAATGAAGCGTTAAATATTAATTGTACTACACAACCTTGTCCTACTACATCGGAGTTGGTAGCTTCAGATAACAGTAACCAGCCGATGACAGGGAATTCAAGAAACATGTTAAATATTCCTAATAATACGTCCCGAACCGATGCAATTGTAGTTGATACTCCTGATGACAATACGATTAATAATGATGCCAGGAATAACAATGAAACTATATCACAGGCACCTCATGAAACAGATACACTTGTAGCAGGCCGACCCAATCGTTGGCAAGAACTGCAAGCAGATTTAATTGATCGTGACTCAAAGGGTGTAAAACTTGGTTTAGGCGATTTTGTATTTTATAGTTTACTGATTGGTCGTGCAACACTTGATGGCGATGCAGTCACTGTGGTCACATGTTATGTGGCTATATTGGTTGGAATGTGTATTACTGTTATAGTATTGGGAATTACACGACAAGCATTACCAGCTTTACCAATAT CCATAACATGTGGTATATTATTTTATTTTGTCAGTTCAGCGACGATATCACCGTTTCTTGAAGCAACAGCCATTGAACGTGTGTTCTTCTGACGTGATTTGTTATTATTATTATTGGCACTACTGCTGGTA]
[+] EMBL CD181714 [ ATTCAAGAAACATGTTAAATATTCCTAATAATACGTCCCGAACCGATGCAATTGTAGTTGATACTCCTGATGACAATACGATTAATAATGATGCCAGGAATAACAATGAAACTATATCACAGGCACCTCATGAAACAGATACACTTGTAGCAGGCCGACCCAATCGTTGGCAAGAACTGCAAGCAGATTTAATTGATCGTGACTCAAAGGGTGTAAAACTTGGTTTAGGCGATTTTGTATTTTATAGTTTACTGATTGGTCGTGCAACACTTGATGGCGATGCAGTCACTGTGGTCACATGTTATGTGGCTATATTGGTTGGAATGTGTATTACTGTTATAGTATTGGGAA TACACGACAAGCATTACCAGCTTTACCNATATCCCAT ACATGTGGNATATTANTTTt ]
consensusID : consensus_8873#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 202 fasta sequence
[GGCCGCCATGGCGGCCGTTTTTAATTCGATTATCTCATGCTTTTGACGATATCACCGTTTCTTGAAGCAACAGCAATTGAACGTGTGTTCTTCTGACGTGATTTGTTATTATTATTATTGTCACTACTGCTGTTATTATGATTGTTTTTTCGTTGTTTTTATACAATCTTCATTGTTACCGTTGATTTAAAATACTCATTAA]
[+] EMBL CD092594 [GGCCGCCATGGCGGCCGTTTTTAATTCGATTATCTCATGCTTTTGACGATATCACCGTTTCTTGAAGCAACAGCAATTGAACGTGTGTTCTTCTGACGTGATTTGTTATTATTATTATTGTCACTACTGCTGTTATTATGATTGTTTTTTCGTTGTTTTTATACAATCTTCATTGTTACCGTTGATTTAAAATACTCATTAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8873#0 CGAGGAGAACCNTTAAGAAACATTCAAGCGTTCAGATAAAGACTTCTCATATTCACCTTA 60
consensus_8873#1 ------------------------------------------------------------
consensus_8873#0 CGAAGATTCGCTGACTTACATGGAGACTTGTATTTAAGTATGAATATTATTTCCAACTTA 120
consensus_8873#1 ------------------------------------------------------------
consensus_8873#0 TATATAATACTTTCTACTGTTTAAAGTAGCATTTAATATTCCTTTATTAATTTCCTGTTG 180
consensus_8873#1 ------------------------------------------------------------
consensus_8873#0 ACTAAACTTTACAATATCCCCTTCAGATATAGTAGCTGTTTTGTGTCCAAACGGACCATT 240
consensus_8873#1 ------------------------------------------------------------
consensus_8873#0 GCGATTGCTTGTAGAAATGGCTCATGAACGACAACAACCTCTTTTCCCTGCCCTTCTATA 300
consensus_8873#1 ------------------------------------------------------------
consensus_8873#0 TTCAACTACTACAGTTTATCTTGTCAAAAAACATCAACCAGTTGAGAAAGTTGAAAATGA 360
consensus_8873#1 ------------------------------------------------------------
consensus_8873#0 TCAACAATTTGTTGGATCCACTATTACATGTTCTGTTGATGCTCGGAATGAAGCGTTAAA 420
consensus_8873#1 ------------------------------------------------------------
consensus_8873#0 TATTAATTGTACTACACAACCTTGTCCTACTACATCGGAGTTGGTAGCTTCAGATAACAG 480
consensus_8873#1 ------------------------------------------------------------
consensus_8873#0 TAACCAGCCGATGACAGGGAATTCAAGAAACATGTTAAATATTCCTAATAATACGTCCCG 540
consensus_8873#1 ------------------------------------------------------------
consensus_8873#0 AACCGATGCAATTGTAGTTGATACTCCTGATGACAATACGATTAATAATGATGCCAGGAA 600
consensus_8873#1 ------------------------------------------------------------
consensus_8873#0 TAACAATGAAACTATATCACAGGCACCTCATGAAACAGATACACTTGTAGCAGGCCGACC 660
consensus_8873#1 ------------------------------------------------------------
consensus_8873#0 CAATCGTTGGCAAGAACTGCAAGCAGATTTAATTGATCGTGACTCAAAGGGTGTAAAACT 720
consensus_8873#1 ------------------------------------------------------------
consensus_8873#0 TGGTTTAGGCGATTTTGTATTTTATAGTTTACTGATTGGTCGTGCAACACTTGATGGCGA 780
consensus_8873#1 ------------------------------------------------------------
consensus_8873#0 TGCAGTCACTGTGGTCACATGTTATGTGGCTATATTGGTTGGAATGTGTATTACTGTTAT 840
consensus_8873#1 ------------------------------------------------------------
consensus_8873#0 AGTATTGGGAATTACACGACAAGCATTACCAGCTTTACCAATATCCATAACATGTGGTAT 900
consensus_8873#1 ---------------------------------------GGCCGCCATGGCG-GCCGTTT 20
**** * * ** *
consensus_8873#0 ATTATTTTATTTTGTCAGTTCAGCGACGATATCACCGTTTCTTGAAGCAACAGCCATTGA 960
consensus_8873#1 TTAATTCGATTATCTCATGCTTTTGACGATATCACCGTTTCTTGAAGCAACAGCAATTGA 80
* *** *** * *** ****************************** *****
consensus_8873#0 ACGTGTGTTCTTCTGACGTGATTTGTTATTATTATTATTGGCACTACTGCTGGTA----- 1015
consensus_8873#1 ACGTGTGTTCTTCTGACGTGATTTGTTATTATTATTATTGTCACTACTGCTGTTATTATG 140
**************************************** *********** **
consensus_8873#0 ------------------------------------------------------------
consensus_8873#1 ATTGTTTTTTCGTTGTTTTTATACAATCTTCATTGTTACCGTTGATTTAAAATACTCATT 200
consensus_8873#0 --
consensus_8873#1 AA 202
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||