cluster # 8880

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Schistosoma mansoni
cluster # 8880 cluster # 8880 Sequences # 7 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8880#0 length = 643 sequences # 2

consensus_8880#1 length = 595 sequences # 2
consensus_8880#2 length = 366 sequences # 3

consensusID : consensus_8880#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 643
fasta sequence

                              [TCTGGAGAAGCGAATGTGCATTCACCATCCTCACATACAAGCGACAAAGATTCCACATCATATACCGGATATATTGATGGCTTTAGTGGGCAAAATAAATTAGATGTTGAAATTGCTGTTGAAGC-ATTGCTGCCGAATCATTTAGTCCCATGGATCTGATTGATTCAACTGAGTCAGTTAAAGAAACTCATGATTGTAAGAATGAATCAAGCTTTAGTCAACAGACAAATGAATCTCTTGGTGTTTTCTCATTCAATAACGATCTANATACGAACTCGAATCTTCTTTCGAATTCTATCGATGTTTTTAGGACTGCTGATAGACATAATTCACTGGACTTAGATGAATTCAGGTTGACGTGAACTTCGTGATTCTAGAAATTCCACGGCTTTCCAGTCCAACATTGATAGCACAACATCATAGTTTAGTTCTGTACTGATCATCTTTAACCAATTCAATCAAACTCCGTCAAAAATCATGTAGAATGATTAGTCTTTTAATCATCACACGTTCATCACAAGCTTTAGACCCGAAATGTCGTAGTATGATCAAGGGTGAGGAAATGTTCCCATATGGCTATGTGTTTGTAGCCACTGTCAAGGGAATCCAACTGATTGTCTTCTGGTGGCTTGTTGTTTGCAAA]

[+] EMBL CD199252             [TCTGGAGAAGCGAATGTGCATTCACCATCCTCACATACAAGCGACAAAGATTCCACATCATATACCGGATATATTGATGGCTTTAGTGGGCAAAATAAATTAGATGTTGAAATTGCTGTTGAAGC ATTGCTGCCGAATCATTTAGTCCCATGGATCTGATTGATTCAACTGAGTCAGTTAAAGAAACTCATGATTGTAAGAATGAATCAAGCTTTAGTCAACAGACAAATGAATCTCTTGGTGTTTTCTCATTCAATAACGATCTANATACGAACTCGAATCTTCTTTCGAATTCTATCGATGTTTTTAGGACTGCTGATAGACATAATTCAC                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD078884             [                                        GCGACAAAGATTCCACATCATATACCGGATATATTGATGGCTTTAGTGGGCAAAATAAATTAGATGTTGAAATTGCTGTTGAAGCAATTGCTGCCGAATCATTTAGTCCCATGGATCTGATTGATTCAACTGAGTCAGTTAAAGAAACTCATGATTGTAAGAATGAATCAAGCTTTAGTCAACAGACAAATGAATCTCTTGGTGTTTTCTCATTCAATAACGATCTAAATACTAACTCGAATCTTCTTTCGAATTCTATCGATGTTTTTAGGACTGCTGATAGACATAATTCACTGGACTTAGATGAATTCAGGTTGACGTGAACTTCGTGATTCTAGAAATTCCACGGCTTTCCAGTCCAACATTGATAGCACAACATCATAGTTTAGTTCTGTACTGATCATCTTTAACCAATTCAATCAAACTCCGTCAAAAATCATGTAGAATGATTAGTCTTTTAATCATCACACGTTCATCACAAGCTTTAGACCCGAAATGTCGTAGTATGATCAAGGGTGAGGAAATGTTCCCATATGGCTATGTGTTTGTAGCCACTGTCAAGGGAATCCAACTGATTGTCTTCTGGTGGCTTGTTGTTTGCAAA]




>consensus_8880#0
TCTGGAGAAGCGAATGTGCATTCACCATCCTCACATACAAGCGACAAAGATTCCACATCA
TATACCGGATATATTGATGGCTTTAGTGGGCAAAATAAATTAGATGTTGAAATTGCTGTT
GAAGCATTGCTGCCGAATCATTTAGTCCCATGGATCTGATTGATTCAACTGAGTCAGTTA
AAGAAACTCATGATTGTAAGAATGAATCAAGCTTTAGTCAACAGACAAATGAATCTCTTG
GTGTTTTCTCATTCAATAACGATCTANATACGAACTCGAATCTTCTTTCGAATTCTATCG
ATGTTTTTAGGACTGCTGATAGACATAATTCACTGGACTTAGATGAATTCAGGTTGACGT
GAACTTCGTGATTCTAGAAATTCCACGGCTTTCCAGTCCAACATTGATAGCACAACATCA
TAGTTTAGTTCTGTACTGATCATCTTTAACCAATTCAATCAAACTCCGTCAAAAATCATG
TAGAATGATTAGTCTTTTAATCATCACACGTTCATCACAAGCTTTAGACCCGAAATGTCG
TAGTATGATCAAGGGTGAGGAAATGTTCCCATATGGCTATGTGTTTGTAGCCACTGTCAA
GGGAATCCAACTGATTGTCTTCTGGTGGCTTGTTGTTTGCAAA

consensusID : consensus_8880#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 595
fasta sequence

                              [AATGTGCATTCACCATCCTCACATTCAAGCGACAAAGATTCCACATCATATACCGGATATATTGATGGCTTTAGTGGGCAAAATAAATTAGATGTTGAAATTGCTGTTGAAGCAATTGCTGCCGAATCATTTAGTCCCATGGATCTGATTGATTCAACTGAGTCAGTTAAAGAAACTCATGATTGTAAGAATGAATCAAGCTTTAGTCAACAGACAAATGAATCTCTTGGTGTTTTCTCATTCAATAACGATCTAAATACTAACTCGAATCTTCTTTCGAATTCTATCGATGTTTTTAGGACTGCTGATAGACATAATTCACTGGACTTAGATGACTCAAGGGATATATCATCGTCCACCGGTAGTCATGTTGTTCATTCATTAAAACCAAATGTAGATAGTAATTTAACAAAAACTGTATTATTAGATGAAAATTTGGATGTTCACTTACATTCAAATGTTTTACCTGATTCGTCTCCAGATTGTACAGAGACAACGACACCATCTACCATTTTGATTAATCCATCGAGAATCAACACTTTATCGTTAAGTACATCCAGTAAGCCAGTCAACTCTGTTATGGGTAATCAACATG]

[+] EMBL CD168304             [AATGTGCATTCACCATCCTCACATTCAAGCGACAAAGATTCCACATCATATACCGGATATATTGATGGCTTTAGTGGGCAAAATAAATTAGATGTTGAAATTGCTGTTGAAGCAATTGCTGCCGAATCATTTAGTCCCATGGATCTGATTGATTCAACTGAGTCAGTTAAAGAAACTCATGATTGTAAGAATGAATCAAGCTTTAGTCAACAGACAAATGAATCTCTTGGTGTTTTCTCATTCAATAACGATCTAAATACTAACTCGAATCTTCTTTCGAATTCTATCGATGTTTTTAGGACTGCTGATAGACATAATTCACTGGACTTAGATGACTCAAGGGATATATCATCGTCCACCGGTAGTCATGTTGTTCATTCATTAAAACCAAATGTAGATAGTAATTTAACAAAAACTGTATTATTAGATGAAAATTTGGATGTTCACTTACATTCAAATGTTTTACCTGATTCGTCTCCAGATTGTACAGAGACAACGACACCATCTACCATTTTGATTAATCCATCGAGAATCAACACTTTATCGTTAAGTACATCCAGTAAGCCAGTCAACTCTGTTATGGGTAATCAACATG]
[+] EMBL CD199312             [                                                                                                                                                                                                                      CAAATGAATCTCTTGGTGTTTTCTCATTCAATAACGATCTAAATACGAACTCGAATCTTCTCTCGAATTCTATCGACGTTTTTAGGACTGCTGATAGACATAATTCACTGGACTTAGATGACTCCAGGGATATATCAT                                                                                                                                                                                                                                                   ]




>consensus_8880#1
AATGTGCATTCACCATCCTCACATTCAAGCGACAAAGATTCCACATCATATACCGGATAT
ATTGATGGCTTTAGTGGGCAAAATAAATTAGATGTTGAAATTGCTGTTGAAGCAATTGCT
GCCGAATCATTTAGTCCCATGGATCTGATTGATTCAACTGAGTCAGTTAAAGAAACTCAT
GATTGTAAGAATGAATCAAGCTTTAGTCAACAGACAAATGAATCTCTTGGTGTTTTCTCA
TTCAATAACGATCTAAATACTAACTCGAATCTTCTTTCGAATTCTATCGATGTTTTTAGG
ACTGCTGATAGACATAATTCACTGGACTTAGATGACTCAAGGGATATATCATCGTCCACC
GGTAGTCATGTTGTTCATTCATTAAAACCAAATGTAGATAGTAATTTAACAAAAACTGTA
TTATTAGATGAAAATTTGGATGTTCACTTACATTCAAATGTTTTACCTGATTCGTCTCCA
GATTGTACAGAGACAACGACACCATCTACCATTTTGATTAATCCATCGAGAATCAACACT
TTATCGTTAAGTACATCCAGTAAGCCAGTCAACTCTGTTATGGGTAATCAACATG

consensusID : consensus_8880#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 366
fasta sequence

                              [TTACTGGATGTACTTAACGATAAAGTGTTGATTCTCGATGGATTAATCAAAATGGTAGATGGTGTCGTTGTCTCTGTACAATCTGGAGACGAATCAGGTAAAACATTTGAATGTAAGTGAACATCCAAATTTTCATCTAATAATACAGTTTTTGTTAAATTACTATCTACATTTGGTTTTAATGAATGAACAACATGACTACCGGTGGACGATGATATATCCCTTGAGCTCAATGTGTAGTACTAGTTATTAAATCCTTTATTATGTATAGCTGGGGAACTATATTACAACAAATGCAATCGATAAATATTTCTATTCAGTGATGTAATTGACTCATTCTACACAGCTTATGGTAATTGACTATTA]

[+] EMBL CD152605             [TTACTGGATGTACTTAACGATAAAGTGTTGATTCTCGATGGATTAATCAAAATGGTAGATGGTGTCGTTGTCTCTGTACAATCTGGAGACGAATCAGGTAAAACATTTGAATGTAAGTGAACATCCAAATTTTCATCTAATAATACAGTTTTTGTTAAATTACTATCTACATTTGGTTTTAATGAATGAGCAACATGACTACCGGTGGACGATGATATATCCCTTGAGCTCAATGTGTAGTACTAGTTATTAAATCCTTTATTATGTATAGCTGGGGAACTATATTACAACAAATGCAATCGATAAATATTTCTATTCAGTGATGTAATTGACTCATTCTACACAGCTTATGGTAATTGACTATTA]
[+] EMBL CD152759             [TTACTGGATGTACTTAACGATAAAGTGTTGATTCTCGATGGATTAATCAAAATGGTAGATGGTGTCGTTGTCTCTGTACAATCTGGAGACGAATCGGGTAAAACATTTGAATGTAAGTGAACATCCAAATTTTCATCTAATAATACAGTTTTTGTTAAATTACTATCTACATTTGGTTTTAATGAATGAACAACATGACTACCGGTGGACGATGATATATCCCTTGAGCTCAATGTGTAGTACTAGTTATTAAATCCTTTATTATGTATAGCTGGGGAACTATATTACAACAAATGCAATCGATAAATATTTCTATTCAGTGATGTAATTGACTCATTCTACACAGCTTATGGTAATTGACT    ]
[+] EMBL CD152585             [TTACTGGATGTACTTAACGATAAAGTGTTGATTCTCGATGGATTAATCAAAATAGTAGATGGTGTCGTTGTCTCTGTACAATCTGGAGACGAATCAGGTAAAACATTTGAATGTAAGTGAACATCCAAATTTTCATCTAATAATACAGTTTTTGTTAAATTACTATCTACATTTGGTTTTAATGAATGAACAACATGACTACCGGTGGACGATGATATATCCCTTGAGCTCAATGTGTAGTACTAGTTATTAAATCCTTTATTATGTATAGCTGGGGAACTATATTACAACAAATGCAATCGATAAATATTTCTATTCAGTGATGTAATTGACTCA                              ]




>consensus_8880#2
TTACTGGATGTACTTAACGATAAAGTGTTGATTCTCGATGGATTAATCAAAATGGTAGAT
GGTGTCGTTGTCTCTGTACAATCTGGAGACGAATCAGGTAAAACATTTGAATGTAAGTGA
ACATCCAAATTTTCATCTAATAATACAGTTTTTGTTAAATTACTATCTACATTTGGTTTT
AATGAATGAACAACATGACTACCGGTGGACGATGATATATCCCTTGAGCTCAATGTGTAG
TACTAGTTATTAAATCCTTTATTATGTATAGCTGGGGAACTATATTACAACAAATGCAAT
CGATAAATATTTCTATTCAGTGATGTAATTGACTCATTCTACACAGCTTATGGTAATTGA
CTATTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8880#0      TCTGGAGAAGCGAATGTGCATTCACCATCCTCACATACAAGCGACAAAGATTCCACATCA 60
consensus_8880#1      ------------AATGTGCATTCACCATCCTCACATTCAAGCGACAAAGATTCCACATCA 48
consensus_8880#2      ------------------------------------------------------------
                                                                                  

consensus_8880#0      TATACCGGATATATTGATGGCTTTAGTGGGCAAAATAAATTAGATG-TTGAAATTGCTGT 119
consensus_8880#1      TATACCGGATATATTGATGGCTTTAGTGGGCAAAATAAATTAGATG-TTGAAATTGCTGT 107
consensus_8880#2      -TTACTGGATGTACTTAACGATAAAGTGTTGATTCTCGATGGATTAATCAAAATGGTAGA 59
                        *** **** ** * *  * *  ****   *   *  **    *  *  **** *  * 

consensus_8880#0      TGAAGCA-TTGCTGCCGAATCATTTAGTCCCATGGATCTGATTGATTCAACTGAGTCAGT 178
consensus_8880#1      TGAAGCAATTGCTGCCGAATCATTTAGTCCCATGGATCTGATTGATTCAACTGAGTCAGT 167
consensus_8880#2      TGGTGTCGTTGTCTCTGTACAATCTGGAG--ACGAATCAGGT-AAAACATTTGAAT--GT 114
                      **  *   ***   * * *  ** * *    * * *** * *  *  **  *** *  **

consensus_8880#0      TAAAGAA-ACTCATGATTGTAAGAATGAATCAAGCTTTAGTCAACAGACAAATGAATCTC 237
consensus_8880#1      TAAAGAA-ACTCATGATTGTAAGAATGAATCAAGCTTTAGTCAACAGACAAATGAATCTC 226
consensus_8880#2      AAGTGAACATCCAAATTTTCATCTAATAATACAGTTTTTGTTAAATTACTATCTA--CAT 172
                       *  *** *  **   **  *   *  ***  ** *** ** **   ** *   *  *  

consensus_8880#0      TTGGTGTTTTCTCATTCAATAACG-ATCTANATACGAACTCGAATCT-TCTTTCGAATTC 295
consensus_8880#1      TTGGTGTTTTCTCATTCAATAACG-ATCTAAATACTAACTCGAATCT-TCTTTCGAATTC 284
consensus_8880#2      TTGGT-TTTAATGAATGAACAACATGACTACCGGTGGACGATGATATATCCCTTGAGCTC 231
                      ***** ***  * * * ** ***    ***       **    ** * **  * **  **

consensus_8880#0      TATCGATGTTTTTAGGACTGCTGATAGACATAATTCACTGGACTTAGATGAATTCAGGTT 355
consensus_8880#1      TATCGATGTTTTTAGGACTGCTGATAGACATAATTCACTGGACTTAGATGACTCAAGGGA 344
consensus_8880#2      AATGTGTAGTACTAG--TTATTAA-ATCCTTTATTATGTATAGCTGGGGAACTATA---T 285
                       **   *  *  ***   *  * * *  * * ***   *  *  * *   * *  *    

consensus_8880#0      GACGTGAACTTCG--TGATTCTAGAAATTCCACGGCTTTCCAGTCCAACATTGATAGCAC 413
consensus_8880#1      TATATCATCGTCCACCGGTAGTCATGTTGTTCATTCATTAAAACCAAATGTAGATAGTAA 404
consensus_8880#2      TACAACAAATGCAATCGATAAATATTTCTATTCAGTGATGTAATTGACTCATTCTACACA 345
                       *    *    *    * *                   *  *    *       **    

consensus_8880#0      AACATCATAGTTTAGTTCTGTACTGATCATCTTTAACCAATTCAATCAAACTCCGTCAAA 473
consensus_8880#1      TTTAACAAAAACTGTATTATTA--GATGAAAATTTGGATGTTCACTTACATTC------- 455
consensus_8880#2      GCTTATGGTAATTG-ACTATTA-------------------------------------- 366
                                  *       **                                      

consensus_8880#0      AATCATGTAGAATGATTAGTCTTTTAATCAT-CACACGTT-CATCACAAGCTTTAGACCC 531
consensus_8880#1      AAATGTTTTACCTGATTCGTCTCCAGATTGTACAGAGACAACGACACCATCTACCATTTT 515
consensus_8880#2      ------------------------------------------------------------
                                                                                  

consensus_8880#0      GAAATGTCGTAGTATGATCAAGGGTGAGGAAATGTTCCCATATGGCTATGTGTTTGTAGC 591
consensus_8880#1      GATTAATCCATCGAGAATCAACACTTTATCGTTAAGTACATCCAGTAA---GCCAGTCAA 572
consensus_8880#2      ------------------------------------------------------------
                                                                                  

consensus_8880#0      CACTGTCAAGGGAATCCAACTGATTGTCTTCTGGTGGCTTGTTGTTTGCAAA 643
consensus_8880#1      CTCTGTTATGGGTAATCAACATG----------------------------- 595
consensus_8880#2      ----------------------------------------------------