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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8894#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 772 fasta sequence
[TGATGAAGCTCTCACGTTCATTTTCTCGCTGACAACTAACAAGATTTCCCCACTTTTATGGCAAGTTTTCGATCAGCTCTATCCTGTATTCAAAAAAGATGCTTGCGAGTGCTTTTCCGAAATGATGCCGTGTCTACATAATTACATAACAGTGGACCGCGAGGCTTTCCTGGCAAATGCTTCACGTATTGAACAAGTTACTGCTATGTGTTTAGAGGTGTTCTCAATGGATGACCAAGAAAGATTACAAATGCATGCTGCCAAATTACTTGAAGTTATTTTACTTGATTATCGAGGTCAAGTGAATCCATATGTACCAAAATATGTTGAGCTAGCACTTACACGTCTTACACGTCCGCTTGTTTCAAGTGAACTTAGAACACTCTGTATTCAGGTGGTAATTGCTGGATTGCTTTACTCACCTATGGATATGCTTCATATGATGATCGAGCATCCATGGCCTGGGACAGAGGTTAACATTTTGTCCGAATTCCTTAAACGATGGATTCAAGATGCAGACTGTTTCCTTGGATTACATGATCGCCGCCTTTGTGTCTTAGGACTTTGTTTGATTATTTCTCTTCCGGCTGACAAACGAACTGATGCAATTGTAACACTCAGTGAAAAGTATATACCATCACTTCTACTTCTATTTTCTGGACTGAAAAAGGCGTACGCAACAAAAGCCTCCAATCAAAATGAAGATGATTCGGATGAAGAAGAATCTGAAACGGAGGAAGATTTAGAAGGTAAAGCTTTGGGAAGCGATGAA]
[+] EMBL CD184654 [TGATGAAGCTCTCACGTTCATTTTCTCGCTGACAACTAACAAGATTTCCCCACTTTTATGGCAAGTTTTCGATCAGCTCTATCCTGTATTCAAAAAAGATGCTTGCGAGTGCTTTTCCGAAATGATGCCGTGTCTACATAATTACATAACAGTGGACCGCGAGGCTTTCCCGGCAAATGCTTCACGTATTGAACAAGTTACTGCTATGTGTTTAGAGGTGTTCTCAATGGATGACCAAGAAAGATTACAAATGCATGCTGCCAAATTACTTGAAGTTATTTTACTTGATTATCGAGGTCAAGTGAATCCATATGTACCAAAATATGTTGAGCTAGCACTTACACGTCTTACACGTCCGCTTGTTTCAAGTGAACTTAGAACACTCTGTATTCAGGTGGTAATTGCTGGATTGCTTTACTCACCTATGGATATGCTTCATAT ]
[+] EMBL BF936574 [ ACAGTGGACCGCGAGGCTTTCCTGGCAAATGCTTCACGTATTGAACAAGTTACTGCTATGTGTTTAGAGGTGTTCTCAATGGATGACCAAGAAAGATTACAAATGCATGCTGCCAAATTACTTGAAGTTATTTTACTTGATTATCGAGGTCAAGTGAATCCATATGTACCAAAATATGTTGAGCTAGCACTTACACGTCTTACACGTCCGCTTGTTTCAAGTGAACTTAGAACACTCTGTATTCAGGTGGTAATTGCTGGATTGCTTTACTCACCTATGGATATGCTTCATATGATGATCGAGCATCCATGGCCTGGGACAGAGGTTAACATTTTGTCCGAATTCCTTAAACGATGGATTCAAGATGCAGACTGTTTCCTTGGATTACATGATCGCCGCCTTTGTGTCTTAGGACTTTGTTTGATTATTTCTCTTCCGGCTGACAAACGAACTGATGCAATTGTAACACTCAGTGAAAAGTATATACCATCACTTCTACTTCTATTTTCTGGACTGAAAAAGGCGTACGCAACAAAAGCCTCCAATCAAAATGAAGATGATTCGGATGAAGAAGAATCTGAAACGGAGGAAGATTTAGAAGGTAAAGCTTTGGGAAGCGATGAA]
[-] EMBL CD179603 [ TTCGTGGCAAATGCTTCACGTATTGAACAAGTTACTGCTATGTGTTTAGAGGTGTTATCAATGGATGACCAAGAAAGATTACAAATGCATGCTGCCAAATTACTTGAAGTTATTTTACTTGATTATCGAGGTCAAGTGAATCCATATGTACCAAAATATGTTGAGCTAGCACTTACACGTCTTACACGTCCGCTTGTTTCAAGTGAACTTAGAACACTCTGTATTCAGGTGGTAATTGCTGGATTGCTTTACTCACCTATGGATATGCTTCATATGATGATCGAGCATCCATGGCCTGGGACAGAGGTTAACATTTTGTCCGAATTCCTTAAACGATGGATTCAAGATGCAGACTGTTTCCTTGGATTACATGATCGCCGCCTTTGTGTCTTAGGACTTTGTTTGATTATTTCT ]
[-] EMBL CD113924 [ CGCTTGTTTCAAGTGAACTTAGAACACTCTGTATTCAGGTGGTAATTGCTGGATTGCTTTACTCACCTATGGATATGCTTCATATGATGATCGAGCATCCATGGCCTGGGACAGAGGTTAACATTTTGTCCGAATTCCTTAAACGATGGATTCAAGATGCAGACTGTTTCCTTGGATTACATGATCGCCGCCTTTGTGTCTTAGGACTTTGTTTGATTATTTCTCTTCCGGCTGACAAACGAACTGATGCAATTGTAACACTCAGTGAAAAGTATATACCATCACTTCTACTTCTATTTTCTGGACTGAAAAAGGCGTACGCAACAAAAGCCTCCAATCAAAATGAAGATGATTCGGATGAAGAAGAATCTGAAACGGAGGAAGATTTAGAAGGGAAgggta ]
consensusID : consensus_8894#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 615 fasta sequence
[TGTTAGAGGCAACTAAAGATTCAGAAGACGATGATGATGATGATGTTGACGACGATGAAGACGATGAAGAAGAAGAAACATTGGAGGCATTCGACACACAAATGGATAAGTCTGAATGTGATATGGATGAATATGTAACGTTCTATCGTGTAATGACTGAATTGGAAAGAACTGATTATGCATGGTATAGTCAGTTGATCAATCATCTTAGTGAAGTACAACAAAATGATCTCAAAGGAGTGGTGGATACTGCTCTGAAATGTATCCAACAAAAAGAGTCTAAAATTATTGAACAAGCTGGAGGATACACTTTTTCCCCGAATATTCCTAGTAGCTTTGATTTTGGTTCACCCAATGGACAACTTAAATGACCATCGGTGTGTGTGTGTGTGTGTGTTATAAACTCTGTTGTATGGTGGAATTAAGTAATAATTTATGATGCTTTTTTTCTCTGTATAGGATACGTTATAGTTTTTAATCATCATGTAAACAAAACTATCACAGTTACAATTTACTTAACTCCAATATAATAAATGAGCACTACCCCCCATTATGCTATTTTTATTTCGTAAATATCTGGTAATTATGATTTTATTCTTGCTTCAGTTTTTTATG]
[+] EMBL AI975334 [TGTTAGAGGCAACTAAAGATTCAGAAGACGATGATGATGATGATGTTGACGACGATGAAGACGATGAAGAAGAAGAAACATTGGAGGCATTCGACACACAAATGGATAAGTCTGAATGTGATATGGATGAATATGTAACGTTCTATCGTGTAATGACTGAATTGGAAAGAACTGATTATGCATGGTATAGTCAGTTGATCAATCATCTTAGTGAAGTACAACAAAATGATCTCAAAGGAGTGGTGGATACTGCTCTGAAATGTATCCAACAAAAAGAGTCTAAAATTATTGAACAAGCTGGAGGATACACTTTTTCCCCGAATATTCCTAGTAGCTTTGATTTTGGTTCACCCAATGGACAACTTAAATGACCATCGGTGTGTGTGTGTGTGTGTGTTATAAACTCTGTTGTATGGTGGAATTAAGTAATAATTTATGATGCTTTTTTTCTCTGTATAGGATACGTTATAGTTTTTAATCATCATGTAAACAAAACTATCACAGTTACAATTTACTTAACTCCAATATAATAAATGAGCACTACCCCCCATTATGCTATTTTTATTTCGTAAATATCTGGTAATTATGATTTTATTCTTGCTTCAGTTTTT ]
[+] EMBL CD083574 [ cacgaggGAAACATTGGAGGCATTCGACACACAAATGGATAAGTCTGAATGTGATATGGATGAATATGTAACGTTCTATCGTGTAATGACTGAATTGGAAAGAACTGATTATGCATGGTATAGTCAGTTGATCAATCATCTTAGTGAAGTACAACAAAATGATCTCAAAGGAGTGGTGGATACTGCTCTGAAATGTATCCAACAAAAAGAGTCTAAAATTATTGAACAAGCTGGAGGATACACTTTTTCCCCGAATATTCCTAGTAGCTTTGATTTTGGTTCACCCAATGGACAACTTAAATGACCATCGGTGTGTGTGTGTGTGTGTGTTATAAACTCTGTTGTATGGTGGAATTAAGTAATAATTTATGATGCTTTTTTTCTCTGTATAGGATACGTTATAGTTTTTAATCATCATGTAAACAAAACTATCACAGTTACAATTTACTTAACTCCAATATAATAAATGAGCACTA CCCCCATTATGCTATTTCTATTTCGTAAATATCTGGTAATTATGATTTTATTCTTGCTTCAGATTTCTATG]
consensusID : consensus_8894#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 598 fasta sequence
[CAAGTGAATCCATATGTACCAAAGTATGTTGAGCTAGCACTTACACGTCTTACACGTCCGCTTGTTTCAAGTGAACTTAGAACACTCTGTATTCAGGTGGTAATTGCTGGATTGCTTTACTCACCTATGGATATGCTTCATATGATGATCGAGCATCCATGGCCTGGGACAGAGGTTAACATTTTGTCCGAATTCCTTAAACGATGGATTCAAGATGCAGACTGTTTCCTTGGATTACATGATCGCCGCCTTTGTGTCTTACGACTTTGTTTGATTATTTCTCTTCCGGCTGACAAACGAACTGATGCAATTGTAACACTCAGTGATATGGATGAACATGTAACGTTCTATCGTGTAATGACTGAATTGGAAAGAACTGATTATGCATGGTATAGTCAGTTGATCAATCATCTTAGTGAAGTACAACAAAATGATCTCAAAGGAGTGGTGGATACTGCTCTGAAATGTATCCAACAAAAAGAGTCTAAAATTATTGAACAAGCTGGAGGATACACTTTTTCCCCGAATATTCCTAGTAGCTTTGATTTTGGTTCACCCAATGGACAACTTAAATGACCATCGGTGTGTGTGTGTGTGT]
[+] EMBL CD152958 [CAAGTGAATCCATATGTACCAAAGTATGTTGAGCTAGCACTTACACGTCTTACACGTCCGCTTGTTTCAAGTGAACTTAGAACACTCTGTATTCAGGTGGTAATTGCTGGATTGCTTTACTCACCTATGGATATGCTTCATATGATGATCGAGCATCCATGGCCTGGGACAGAGGTTAACATTTTGTCCGAATTCCTTAAACGATGGATTCAAGATGCAGACTGTTTCCTTGGATTACATGATCGCCGCCTTTGTGTCTTACGACTTTGTTTGATTATTTCTCTTCCGGCTGACAAACGAACTGATGCAATTGTAACACTCAGTGATATGGATGAACATGTAACGTTCTATCGTGTAATGACTGAATTGGAAAGAACTGATTATGCATGGTATAGTCAGTTGATCAATCATCTTAGTGAAGTACAACAAAATGATCTCAAAGGAGTGGTGGATACTGCTCTGAAATGTATCCAACAAAAAGAGTCTAAAATTATTGAACAAGCTGGAGGATACACTTTTTCCCCGAATATTCCTAGTAGCTTTGATTTTGGTTCACCCAATGGACAACTTAAATGACCATCGGTGTGTGTGTGTGTGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8894#0 TGATGAAGCTCTCACGTTCATTTTCTCGCTGACAACTAACAAGATTTCCCCACTTTTATG 60
consensus_8894#2 ------------------------------------------------------------
consensus_8894#1 ------------------------------------------------------------
consensus_8894#0 GCAAGTTTTCGATCAGCTCTATCCTGTATTCAAAAAA-GATGCTTGCGAGTGCTTTTCCG 119
consensus_8894#2 ------------------------------------------------------------
consensus_8894#1 ---------TGTTAGAGGCAACTAAAGATTCAGAAGACGATGATGATGATGATGTTGACG 51
consensus_8894#0 A-AATGATGCCGTGTCTACATAATTACATAACAGTGGACCGCGAGGCTTTCCTGGCAAAT 178
consensus_8894#2 ------------------------------------------------------------
consensus_8894#1 ACGATGAAGACG-ATGAAGAAGAAGAAACATTGGAGGCATTCGACACACAAATGGATAAG 110
consensus_8894#0 GCTTCACGTATTGAACAAGTTACTGCTATGTGTTTAGAGGTGTTCTCAATGGATGACCAA 238
consensus_8894#2 ------------------------------------------------------------
consensus_8894#1 TCTGAATGTGAT--ATGGATGAATATGTAACGTTCTATCGTGTAATGACTGAAT---TGG 165
consensus_8894#0 GAAAGATTACAAATGCATGCTGCCAAATTACTTGAAGTTATTTTACTTGATTATCGAGGT 298
consensus_8894#2 ------------------------------------------------------------
consensus_8894#1 AAAGAACTGATTATGCATGGTAT--AGTCAGTTGA--TCAATCATCTTAGTGAAGTACAA 221
consensus_8894#0 CAAGTGAATCCATATGTACCAAAATATGTTGAGCTAGCACTTACACGTCTTACAC-GTCC 357
consensus_8894#2 CAAGTGAATCCATATGTACCAAAGTATGTTGAGCTAGCACTTACACGTCTTACAC-GTCC 59
consensus_8894#1 CAAAATGATCTCAAAGGAGTGGTGGATACTGCTCTGAAATGTATCCAACAAAAAGAGTCT 281
*** *** * * * ** ** ** * ** * * * * ***
consensus_8894#0 GCTTGTTTCAAGTGAACTTAGA---ACACTCTGTATTCAGGTGGTAATTGCTGGATTGCT 414
consensus_8894#2 GCTTGTTTCAAGTGAACTTAGA---ACACTCTGTATTCAGGTGGTAATTGCTGGATTGCT 116
consensus_8894#1 AAAATTATTGAACAAGCTGGAGGATACACTTTTTCCCCGAATATTCCTAGTAGCTTTGAT 341
* * * * ** ***** * * * * * * * * *** *
consensus_8894#0 TT--ACTCACCTATGGATATGCTTCATATGATGATCGAGCATCCATGGCCTGGGACAGAG 472
consensus_8894#2 TT--ACTCACCTATGGATATGCTTCATATGATGATCGAGCATCCATGGCCTGGGACAGAG 174
consensus_8894#1 TTTGGTTCACCCAATGG-ACAACTTAAATGACCATCG-GTGTGTGTG-TGTGTGTGTGTT 398
** ***** * * * * * **** **** * * ** ** * *
consensus_8894#0 GTTAACATT-TTGTCCGAATTCCTTAAACGATGGATTCAAGATGCAGACTGTTTCCTTGG 531
consensus_8894#2 GTTAACATT-TTGTCCGAATTCCTTAAACGATGGATTCAAGATGCAGACTGTTTCCTTGG 233
consensus_8894#1 ATAAACTCTGTTGTATGGTGGAATTAAGTAATA-ATTTATGATGC---TTTTTTTCTCTG 454
* *** * **** * **** ** *** * ***** * *** ** *
consensus_8894#0 ATTACATGATCGCCGCCTTTGTGTCTTAGGACTTTGTTTGATTATTTCTCTTCCGGCTGA 591
consensus_8894#2 ATTACATGATCGCCGCCTTTGTGTCTTACGACTTTGTTTGATTATTTCTCTTCCGGCTGA 293
consensus_8894#1 --TATAGGAT----ACGTTATAGTTTTTAATCATCATGTAAACAAAACTATCACAGTT-A 507
** * *** * ** ** ** * * * * * * ** * * * * *
consensus_8894#0 CAAACGAACTGATGCAATTGTAACACTCAGTGAAAAGTATATAC-CATCAC-TTCTACT- 648
consensus_8894#2 CAAACGAACTGATGCAATTGTAACACTCAGTGATATGGATGAACATGTAACGTTCTATCG 353
consensus_8894#1 CAATTTACTTAACTCCAATATAATA---AATGAGCACTACCCCC-CATTA--TGCTATT- 560
*** * * * * * * *** * * *** * * * * * ***
consensus_8894#0 TCTATTTTCTGGA---CTGAAAAAGGCGTACGCAACAAAAGCCTCCAATCAAAATGAAGA 705
consensus_8894#2 TGTAATGACTGAA---TTGGAAAGAACTGATTATGCATGG---TATAGTCAGTTGATCAA 407
consensus_8894#1 TTTATTTCGTAAATATCTGGTAATTATG-ATTTTATTCTTGCTTCAGTTTTTTATG---- 615
* ** * * * ** ** * * *
consensus_8894#0 TGATTCGGATGAAGAAGAATCTGAAACGGAGGAAGATTTAGAAGGTAAAGCTTTGGGAAG 765
consensus_8894#2 TCATCTTAGTGAAGTACAACAAAATGATCTCAAAGGAGTGGTGGATACTGCTCTGAAATG 467
consensus_8894#1 ------------------------------------------------------------
consensus_8894#0 CGATGAA----------------------------------------------------- 772
consensus_8894#2 TATCCAACAAAAAGAGTCTAAAATTATTGAACAAGCTGGAGGATACACTTTTTCCCCGAA 527
consensus_8894#1 ------------------------------------------------------------
consensus_8894#0 ------------------------------------------------------------
consensus_8894#2 TATTCCTAGTAGCTTTGATTTTGGTTCACCCAATGGACAACTTAAATGACCATCGGTGTG 587
consensus_8894#1 ------------------------------------------------------------
consensus_8894#0 -----------
consensus_8894#2 TGTGTGTGTGT 598
consensus_8894#1 -----------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||