cluster # 8901

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Schistosoma mansoni
cluster # 8901 cluster # 8901 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8901#0 length = 1324 sequences # 6

consensus_8901#1 length = 143 sequences # 1

consensusID : consensus_8901#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1324
fasta sequence

                              [GAAGCAGAACGTGATGCTGGAATCAAGGAAGCAGAATGTGATCGTAGTCGTTTGGACGTTCGTTATTCAGCGGATACACATATTGCTAATTCAAGTCGTGAATTTCAGTTGAGGAAGGCTAGTTTTGATCAAGAGGTTAATACAGCTCGTGCAGAATCTGAATTGGCCTATAAATTACAGGCTGCTAAAGAGAGACAAAAAATTCGAACAGAAGAAGTGAATATTAATATTGTTGAACGTCGTAAACAAATTGAAATTGAAGAAAAAGGCATACTATGTACTGAAAAGAATATGGATGCTACCGTACGACGTCCAGCTGAAGCAGAAGCTTATAGACTACAACAAATAGCTGAGGGTTATAGATCACAGAAAATTCTTTTAGCTCAAGCTGAGGCCGATGGTATTCGTCTTAAAGGTATTGCTAAAGCTGAAGCTATGGAAGCTGTTGGACGGGCAGAAGCGGAGAGAATGCGTTTGAGGGCTGAAGCTTATAGTAAATACGGTGATGCTGCTATTCTAAATCTCATATTGGATACATTACCGCAAATAGCTGCTGAAGTTGCTGCTCCACTGAGCAAAACCAAAGAAATTGTTATAATGAACGGTTCTAATGGTGAACCAGCTACTTTACAAAGTCTCACTAATCTGGGCAAAGATTTTACTACATTAGTTGGGACTGTTCCACATGCTATTCGAGCTCTAACAAACGTTGATCTCAGTCAGACTATTTCCAAGATTCCAGGAGCTAAGGTTGTCCCACCACAAGGGATATGACAATGTGTAAAATGTACGAGTCAACCACTGAATATACTTGTTTCTAAAATCATTTTCATAAAAATGACCCATCCTGGTATATTCTNCTTTAGATACAGCGCATCTCGCCACGGACTTTTTTTCTTGCGAAGTGTTATATGTGATATACAAGATAAATTGACTTTACTGCTTTTCGTTCAATTTCGGCATTTCTACTTTGTTTTTCAACATTAATTTCATCTCTTTTTCCATGACTTATCAGGAACCTTATCTATAATAGTTCCTTTGATAAAACAGTTCTCTGTTTTGCTTTAGTTGCAATTAGTGTTGTATATCTATCAATTTTCTTATAGTAATTCGTATTTATTCTACATAGAGAAGTTGCGTACTTGTAAAACTAATTTTTGAATTGTATGTTTCTGTATTGATAATTTTGGTCTTGAAAACCTGCCGTTGCTTCATTTTGTTACTCTTTTTGTTCTTCTTACTTTGTGAATTCGGTTTAGAACCATTTAAATTGTATGATCTATAATTTTTAGAAAAATTCAGGAAATCAGTCTGCCAAAAAAAA]

[+] EMBL CD159150             [GAAGCAGAACGTGATGCTGGAATCAAGGAAGCAGAATGTGATCGTAGTCGTTTGGACGTTCGTTATTCAGCGGATACACATATTGCTAATTCAAGTCGTGAATTTCAGTTGAGGAAGGCTAGTTTTGATCAAGAGGTTAATACAGCTCGTGCAGAATCTGAATTGGCCTATAAATTACAGGCTGCTAAAGAGAGACAAAAAATTCGAACAGAAGAAGTGAATATTAATATTGTTGAACGTCGTAAACAAATTGAAATTGAAGAAAAAGGCATACTATGTACTGAAAAGAATATGGGTGCTACCGTACGACGTCCAGCTGAAGCAGAAGCTTATAGACTACAACAAATAGCTGAGGGTTATAGATCACAGAAAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD090572             [                                                                                                                                                       CAGAATCTGAATTGGCCTATAAATTACAGGCTGCTAAAGAGAGACAAAAAATTCGAACAGAAGAAGTGAATATTAATATTGTTGAACGTCGTAAACAAATTGAAATTGATTATTAAGGCATACTATGTACTGAAAAGAATATGGATGCTACCGTACGACGTCCAGCTGAAGCAGAAGCTTATAGACTACAACAAATAGCTGAGGGTTATAGATCACAGAAAATTCTTTTAGCTCAAGCTGAGGCCGATGGTATTCGTCTTAAAGGTGTTGCTAAAGCTGAAGCTATGGAAGCTGTTGGACGGACAGAAGCGGAGAGAATGCGTTTGAGGGCTGAAGCTTATAGTAAATACGGTGATGCTGCTATTCTAAATCTCATATTGGATACATTACCGCAAATAGCTGCTGAAGTTGCTGCTCCACTGAGCAAAACCAAAGAAATTGTTATAATGAACGGTTCTAATGGTGAACCAGCTACTTTACAAAGTCTCACTAATCTGGGCANAGATTNTACTACATTANTTGGGACTGTTCCACATGCTATTCGAGCTCT ACAAACGTTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD169595             [                                                                                                                                                                                                        AATTCGAACAGAAGAAGTGAATATTAATATTGTTGAACGTCGTAAACAAATTGAAATTGAAGAAAAAGGCATACTATGTACTGAAAGGAATATGGATGCTACCGTACGACGTCCAGCTGAAGCAGAAGCTTATAGACTACAACAAATAGCTGAGGGTTATAGATCACAGAAAATTCTTTTAGCTCAAGCTGAGGCCGATGGTATTCGTCTTAAAGGTATTGCTAACGCTGAAGCTATGGAAGCTGTTGGACGGGCAGAAGCGGAGAGAATGCGTTTGAGGGCTGAAGCTTATAGTAAATACGGTGATGCTGCTATTCTAAATCTCATATTGGATACATTACCGCAAATAGCTGCTGAAGTTGCTGCTCCACTGAGCAAAACCAAAGAAATTGTTATAATGAACGGTTCTAATGGTGAACCAGCTACTTTACAAAGTCTCACTAATCTGGGCAAAGATTTTACTACATTAGTTGGGACTGTTCCACATGCTATTCGAGCTCTAACAAACGTTGATCTCAGTCAGACTATTTCCAAGATTCCAGGAGCTAAGGTTGTCCCACCACAAGGGATATGANCATGTGTAAAATGTACGAGTCAACCACTGAATATACTTGTTTCTAAAATCATTTTCATAAAAATGACCCATCCTGGTATATTCTNCTTTAGATAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD169295             [                                                                                                                                                                                                        AATTCGAACAGAAGAAGTGAATATTAATATTGTTGAACGTCGTAAACAAATTGAAATTGAAGAAAAAGGCATACTATGTACTGAAAAGAATATGGATGCTACCGTACGACGTCCAGCTGAAGCAGAAGCTTATAGACTACAACAAATAGCTGAGGGTTATAGATCACAGAAAATTCTTTTAGCTCAAGCTGAGGCCGATGGTATTCGTCTTAAAGGTATTGCTAAAGCTGAAGCTATGGAAGCTGTTGGACGGGCAGAAGCGGAGAGAATGCGTTTGAGGGCTGAAGCTTATAGTAAATACGGTGATGCTGCTATTCTAAATCTCATATTGGATACATTACCGCAAATAGCTGCTGAAGTTGCTGCTCCACTGAGCAAAACCAAAGAAATTGTTATAATGAACGGCTCTAATGGTGAACCAGCTACTTTACAAAGTCTCACTAATCTGGGCAAAGATTTTACTACATTAGTTGGGACTGTTCCACATGCTATTCGAGCTCTAACAAACGTTGATCTCAGTCAGACTATTTCCAAGATTCCAGGAGCTAAGGTTGTCCCACCACAAGGGATATGACAATGTGTAAAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CD168982             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TGAGCAAAACCAAAGAAATTGTTATAATGAACGGTTCTAATGGTGAACCAGCTACTTTACAAAGTCTCACTAATCTGGGCAAAGATTTTACTACATTAGTTGGGACTGTTCCACATGCTATTCGAGCTCTAACAAACGTTGATCTCAGTCAGACTATTTCCAAGATTCCAGGAGCTAAGGTTGTCCCACCACAAGGGATATGACAATGTGTAAAATGTACGAGTCAACCACTGAATATACTTGTTTCTAAAATCATTTTCATAAAAATGACCCATCCTGGTATATTCTCCTTTAGATACAGCGCATCTCGCCACGGACTTTTTTTCTTGCGAAGTGTTATATGTGATATACAAGATAAATTGACTTTACTGCTTTTCGTTCAATTTCGGCATTTCTACTTTGTTTTTCAACATTAATTTCATCTCTTTTTCCATGACTTATCAGGAACCTTATCTATAATAGTTCCTTTGATAAAACAGTTCTCTGTTTTGCTTTAGTTGCAATTAGTGTTGTATATCTATCAATTTTCTTATAGTAATTCGTATTTATTCTACATAGAGAAGTTGCGTACTTGTAAAACTAATTTTTGAATTGTATGTTTCTGTATTGATAATTTTGGTCTT                                                                                                                                  ]
[-] EMBL AI394997             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TTATCTATATTAGTTCCTTTGATAAACCGGTTCTCTGTTATGCTTTAGTTGCAATTAATGTTGTATATCTATCAATTTTCTTATAGTAATTCGTATTTATTCTACATAGAGAAGTTGCGTACTTGTAAAACTAATTTTTGAATTGTATGTTTCTGTATTGATAATTTTGGTCTTGAAAACCTGCCGTTGCTTCATTTTGTTACTCTTTTTGTTCTTCTTACTTTGTGAATTCGGTTTAGAACCATTTAAATTGTATGATCTATAATTTTTAGAAAAATTCAGGAAATCAGTCTGCCAAAAAAAA]




>consensus_8901#0
GAAGCAGAACGTGATGCTGGAATCAAGGAAGCAGAATGTGATCGTAGTCGTTTGGACGTT
CGTTATTCAGCGGATACACATATTGCTAATTCAAGTCGTGAATTTCAGTTGAGGAAGGCT
AGTTTTGATCAAGAGGTTAATACAGCTCGTGCAGAATCTGAATTGGCCTATAAATTACAG
GCTGCTAAAGAGAGACAAAAAATTCGAACAGAAGAAGTGAATATTAATATTGTTGAACGT
CGTAAACAAATTGAAATTGAAGAAAAAGGCATACTATGTACTGAAAAGAATATGGATGCT
ACCGTACGACGTCCAGCTGAAGCAGAAGCTTATAGACTACAACAAATAGCTGAGGGTTAT
AGATCACAGAAAATTCTTTTAGCTCAAGCTGAGGCCGATGGTATTCGTCTTAAAGGTATT
GCTAAAGCTGAAGCTATGGAAGCTGTTGGACGGGCAGAAGCGGAGAGAATGCGTTTGAGG
GCTGAAGCTTATAGTAAATACGGTGATGCTGCTATTCTAAATCTCATATTGGATACATTA
CCGCAAATAGCTGCTGAAGTTGCTGCTCCACTGAGCAAAACCAAAGAAATTGTTATAATG
AACGGTTCTAATGGTGAACCAGCTACTTTACAAAGTCTCACTAATCTGGGCAAAGATTTT
ACTACATTAGTTGGGACTGTTCCACATGCTATTCGAGCTCTAACAAACGTTGATCTCAGT
CAGACTATTTCCAAGATTCCAGGAGCTAAGGTTGTCCCACCACAAGGGATATGACAATGT
GTAAAATGTACGAGTCAACCACTGAATATACTTGTTTCTAAAATCATTTTCATAAAAATG
ACCCATCCTGGTATATTCTNCTTTAGATACAGCGCATCTCGCCACGGACTTTTTTTCTTG
CGAAGTGTTATATGTGATATACAAGATAAATTGACTTTACTGCTTTTCGTTCAATTTCGG
CATTTCTACTTTGTTTTTCAACATTAATTTCATCTCTTTTTCCATGACTTATCAGGAACC
TTATCTATAATAGTTCCTTTGATAAAACAGTTCTCTGTTTTGCTTTAGTTGCAATTAGTG
TTGTATATCTATCAATTTTCTTATAGTAATTCGTATTTATTCTACATAGAGAAGTTGCGT
ACTTGTAAAACTAATTTTTGAATTGTATGTTTCTGTATTGATAATTTTGGTCTTGAAAAC
CTGCCGTTGCTTCATTTTGTTACTCTTTTTGTTCTTCTTACTTTGTGAATTCGGTTTAGA
ACCATTTAAATTGTATGATCTATAATTTTTAGAAAAATTCAGGAAATCAGTCTGCCAAAA
AAAA

consensusID : consensus_8901#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 143
fasta sequence

                              [ATCGCACGAGGCTTAAATTCCCTTGGACGTGCACAACAGCAAACGTCAAATAGAGATGCTGACATTGGAGTTGCTGAAGCAGAACGTGATGCTGGAATCAAGGAAGCAGAATGTGATCGTATATCGATTTGGACTGTTCTGTT]

[+] EMBL CD083611             [ATCGCACGAGGCTTAAATTCCCTTGGACGTGCACAACAGCAAACGTCAAATAGAGATGCTGACATTGGAGTTGCTGAAGCAGAACGTGATGCTGGAATCAAGGAAGCAGAATGTGATCGTATATCGATTTGGACTGTTCTGTT]




>consensus_8901#1
ATCGCACGAGGCTTAAATTCCCTTGGACGTGCACAACAGCAAACGTCAAATAGAGATGCT
GACATTGGAGTTGCTGAAGCAGAACGTGATGCTGGAATCAAGGAAGCAGAATGTGATCGT
ATATCGATTTGGACTGTTCTGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8901#0      GAAGCAGAACGTGATGCTGGAATCAAGGAAGCAGAATGTGATCGTAGTCGTTTGGACGTT 60
consensus_8901#1      ------------------------------------------------------------
                                                                                  

consensus_8901#0      CGTTATTCAGCGGATACACATATTGCTAATTCAAGTCGTGAATTTCAGTTGAGGAAGGCT 120
consensus_8901#1      ------------------------------------------------------------
                                                                                  

consensus_8901#0      AGTTTTGATCAAGAGGTTAATACAGCTCGTGCAGAATCTGAATTGGCCTATAAATTACAG 180
consensus_8901#1      ------------------------------------------------------------
                                                                                  

consensus_8901#0      GCTGCTAAAGAGAGACAAAAAATTCGAACAGAAGAAGTGAATATTAATATTGTTGAACGT 240
consensus_8901#1      ------------------------------------------------------------
                                                                                  

consensus_8901#0      CGTAAACAAATTGAAATTGAAGAAAAAGGCATACTATGTACTGAAAAGAATATGGATGCT 300
consensus_8901#1      ------------------------------------------------------------
                                                                                  

consensus_8901#0      ACCGTACGACGTCCAGCTGAAGCAGAAGCTTATAGACTACAACAAATAGCTGAGGGTTAT 360
consensus_8901#1      ------------------------------------------------------------
                                                                                  

consensus_8901#0      AGATCACAGAAAATTCTTTTAGCTCAAGCTGAGGCCGATGGTATTCGTCTTAAAGGTATT 420
consensus_8901#1      --ATCGCACGAGGCTTAAATTCCCTTGGACGTGCACAACAGCAAACGTCAAATAGAGAT- 57
                        *** **  *   *    *  *    *  * *  * *  * *  ****  * **  ** 

consensus_8901#0      GCTAAAGCTGAAGCTATGGAAGCTGTTGGACGGGCAGAAGCGGAGAGAATGCGTTTGAGG 480
consensus_8901#1      GCTGACATTGGAGTTGCTGAAGCAGAACGTGATGCTGGAATCAAGGAAGC-------AGA 110
                      *** *   ** ** *   ***** *   *    ** * *    **  *         ** 

consensus_8901#0      GCTGAAGCTTATAGTAAATACGGTGATGCTGCTATTCTAAATCTCATATTGGATACATTA 540
consensus_8901#1      ATGTGATCGTATATCGATTTGGACTGTTCTGTT--------------------------- 143
                           * * ****   * *  *    * *** *                           

consensus_8901#0      CCGCAAATAGCTGCTGAAGTTGCTGCTCCACTGAGCAAAACCAAAGAAATTGTTATAATG 600
consensus_8901#1      ------------------------------------------------------------
                                                                                  

consensus_8901#0      AACGGTTCTAATGGTGAACCAGCTACTTTACAAAGTCTCACTAATCTGGGCAAAGATTTT 660
consensus_8901#1      ------------------------------------------------------------
                                                                                  

consensus_8901#0      ACTACATTAGTTGGGACTGTTCCACATGCTATTCGAGCTCTAACAAACGTTGATCTCAGT 720
consensus_8901#1      ------------------------------------------------------------
                                                                                  

consensus_8901#0      CAGACTATTTCCAAGATTCCAGGAGCTAAGGTTGTCCCACCACAAGGGATATGACAATGT 780
consensus_8901#1      ------------------------------------------------------------
                                                                                  

consensus_8901#0      GTAAAATGTACGAGTCAACCACTGAATATACTTGTTTCTAAAATCATTTTCATAAAAATG 840
consensus_8901#1      ------------------------------------------------------------
                                                                                  

consensus_8901#0      ACCCATCCTGGTATATTCTNCTTTAGATACAGCGCATCTCGCCACGGACTTTTTTTCTTG 900
consensus_8901#1      ------------------------------------------------------------
                                                                                  

consensus_8901#0      CGAAGTGTTATATGTGATATACAAGATAAATTGACTTTACTGCTTTTCGTTCAATTTCGG 960
consensus_8901#1      ------------------------------------------------------------
                                                                                  

consensus_8901#0      CATTTCTACTTTGTTTTTCAACATTAATTTCATCTCTTTTTCCATGACTTATCAGGAACC 1020
consensus_8901#1      ------------------------------------------------------------
                                                                                  

consensus_8901#0      TTATCTATAATAGTTCCTTTGATAAAACAGTTCTCTGTTTTGCTTTAGTTGCAATTAGTG 1080
consensus_8901#1      ------------------------------------------------------------
                                                                                  

consensus_8901#0      TTGTATATCTATCAATTTTCTTATAGTAATTCGTATTTATTCTACATAGAGAAGTTGCGT 1140
consensus_8901#1      ------------------------------------------------------------
                                                                                  

consensus_8901#0      ACTTGTAAAACTAATTTTTGAATTGTATGTTTCTGTATTGATAATTTTGGTCTTGAAAAC 1200
consensus_8901#1      ------------------------------------------------------------
                                                                                  

consensus_8901#0      CTGCCGTTGCTTCATTTTGTTACTCTTTTTGTTCTTCTTACTTTGTGAATTCGGTTTAGA 1260
consensus_8901#1      ------------------------------------------------------------
                                                                                  

consensus_8901#0      ACCATTTAAATTGTATGATCTATAATTTTTAGAAAAATTCAGGAAATCAGTCTGCCAAAA 1320
consensus_8901#1      ------------------------------------------------------------
                                                                                  

consensus_8901#0      AAAA 1324
consensus_8901#1      ----