cluster # 8940

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Schistosoma mansoni
cluster # 8940 cluster # 8940 Sequences # 8 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8940#0 length = 604 sequences # 2

consensus_8940#1 length = 495 sequences # 5
consensus_8940#2 length = 466 sequences # 1

consensusID : consensus_8940#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 604
fasta sequence

                              [GAATAAAGTTCGCTGAATGTCGTCTGTAGAATTTTGTGACTCAACTGACGCTAATGTTCAAAGAACTCAGGATGGATACAATCAATTCAATATTCTTTGTCCACGGTGTTCCAGTATTGTCCTTCGCAAGAATACAGCAAAGCTAGCCAACAAACCACACAACTTGCCCGTGTTTGCTAGAAAATCGGAACTATCCAATCCCTCCAAAGAATTCCCTACGGAACTAACTGAAGAATTCTGGTGTGTTAACGATATGTACGCATTTGAAAATGTCGGATTTACAAACACCGTAAGCACATTTCGTTACCTAACGTGTGCTGATTGCGAACTTGGGCCATTGGGTTTCCATGATACTCAGGAAGGTCCAACTAATGCATATTATATTGCGCTAACCCGTACCACTACTGAAGTTAAATCAAGCTGCAAAAAATAAGTACATAATAAAGCACTATCCGAATGATGCTGTATCAATAGTATGGTTCGCCTCTGGGAAGAAATTCTACTTACTTAACGTTCACCAGTGTAAAATTGTCAGCAGACCAGTCCCAATACACAAAATTAATCAAGTTTTGTATTACTTACTATTAGAAGGATTATACTTTTA]

[+] EMBL BF936528             [GAATAAAGTTCGCTGAATGTCGTCTGTAGAATTTTGTGACTCAACTGACGCTAATGTTCAAAGAACTCAGGATGGATACAATCAATTCAATATTCTTTGTCCACGGTGTTCCAGTATTGTCCTTCGCAAGAATACAGCAAAGCTAGCCAACAAACCACACAACTTGCCCGTGTTTGCTAGAAAATCGGAACTATCCAATCCCTCCAAAGAATTCCCTACGGAACTAACTGAAGAATTCTGGTGTGTTAACGATATGTACGCATTTGAAAATGTCGGATTTACAAACACCGTAAGCACATTTCGTTACCTAACGTGTGCTGATTGCGAACTTGGGCCATTGGGTTTCCATGATACTCAGGAAGGTCCAACTAATGCATATTATATTGCGCTAACCCGTACCACTACTGAAGTTAAATCAAGCTGCAAAAAATAAGTACATAATAAAGCACTATCCGAATGATGCTGTATCAATAGTATGGTTCGCCTCTGGGAAGAAATTCTACTTACTTAACGTTCACCAGTGTAAAATTGTCAGCAGACCAGTCCCAATACACAAAATTAATCAAGTTTTGTATTACTTACTATTAGAAGGATTATACTTTTA]
[+] EMBL AI976461             [GAATAAAGTTCGCTGAATGTCGTCTGTAGAATTTTGTGACTCAACTGACGCTAATGTTCAAAGAACTCAGGATGGATACAATCAATTCAATATTCTTTGTCCACGGTGTTCCAGTATTGTCCTTCGCAAGAATACAGCAAAGCTAGCCAACAAACCACACAACTTGCCCGTGTTTGCTAGAAAATCGGAACTATCCAATCCCTCCAAAGAATTCCCTACGGAACTAACTGAAGAATTCTGGTGTGTTAACGATATGTACGCATTTGAAAATGTCGGATTTACAAACACCGTAAGCACATTTCGTTACCTAACGTGTGCTGATTGCGAACTTGGGCCATTGGGTTTCCATGATACTCAGGAAGGTCCAACTAATGCATATTATATTGCGCTAACCCGTACCACTACTGAAGTTAAATCAAGCTGCAAAAAATAAGTACATAATAAAGCACTATCCGAATGATGCTGTATCAATAGTATGGTTCGCCTCTGGGAAGAAATTCTACTTACTTAACGTTCACCAGTGTAAAATTGTCAGCAGAC                                                                ]




>consensus_8940#0
GAATAAAGTTCGCTGAATGTCGTCTGTAGAATTTTGTGACTCAACTGACGCTAATGTTCA
AAGAACTCAGGATGGATACAATCAATTCAATATTCTTTGTCCACGGTGTTCCAGTATTGT
CCTTCGCAAGAATACAGCAAAGCTAGCCAACAAACCACACAACTTGCCCGTGTTTGCTAG
AAAATCGGAACTATCCAATCCCTCCAAAGAATTCCCTACGGAACTAACTGAAGAATTCTG
GTGTGTTAACGATATGTACGCATTTGAAAATGTCGGATTTACAAACACCGTAAGCACATT
TCGTTACCTAACGTGTGCTGATTGCGAACTTGGGCCATTGGGTTTCCATGATACTCAGGA
AGGTCCAACTAATGCATATTATATTGCGCTAACCCGTACCACTACTGAAGTTAAATCAAG
CTGCAAAAAATAAGTACATAATAAAGCACTATCCGAATGATGCTGTATCAATAGTATGGT
TCGCCTCTGGGAAGAAATTCTACTTACTTAACGTTCACCAGTGTAAAATTGTCAGCAGAC
CAGTCCCAATACACAAAATTAATCAAGTTTTGTATTACTTACTATTAGAAGGATTATACT
TTTA

consensusID : consensus_8940#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 495
fasta sequence

                              [TGGATAATTACCTATCCCTCTGCCCTTCTAGCAAATCTGTCTTCCCAGGCACAAGTGGATCTTTTATTGGAGCTGAATGTGACATATGTTGGTAATCATGAGATTTTGGCCGAATGGAACAGCACAACTTGCCCGTGTTTGCTAGAAAATCGGAACTATCCAATCCCTCCAAAGAATTCCCTACGGAACTAACTGAAGAATTCTGGTGTGTTAACGATATGTACGCATTTGAAAATGTCGGATTTACAAACACCGTAAGCACATTTCGTTACCTAACGTGTGCTGATTGCGAACTTGGGCCATTGGGTTTCCATGATACTCAGGAAGGTCCAACTAATGCATATTATATTGCGCTAACCCGTACCACTACTGAAGTTAAATCAAGCTGCAAAAAATAAGTACATAATAAAGCACTATCCGAATGATGCTGTATCAATAGTATGGTTCGCCTCTGGGAAGAAATTCTACTTACTTAACGTTCACCAGTGTAAAATT]

[+] EMBL CD194592             [TGGATAATTACCTATCCCTCTGCCCTTCTAGCAAATCTGTCTTCCCAGGCACAAGTGGATCTTTTATTGGAGCTGAATGTGACATATGTTGGTAATCATGAGATTTTGGCCGAATGGAACAGCACAACTTGCCCGTGTTTGCTAGAAAATCGGAACTATCCAATCCCTCCAAAGAATTCCCTACGGAACTAACTGAAGAATTCTGGTGTGTTAACGATATGTACGCATTTGAAAATGTCGGATTTACAAACACCGTAAGCACATTTCGTTACCTAACGTGTGCTGATTGCGAACTTGGGCCATTGGGTTTCCATGATACTCAGGAAGGTCCAACTAATGCATATTATATTGCGCTAACCCGTACCACTACTGAAGTTAAATCAAGCTGCAAAAAATAAGTACATAATAAAGCACTATCCGAATGATGCTGTATCAATAGTATGGTTCGCCTCTGGGAAGAAATTCTACTTACTTAACGTTCACCAGTGTAAAATT]
[+] EMBL CD158007             [                                                                                                                                                         AACTATCCAATCCCTCCAAAGAATTCCCTACGGAACTAACTGAAGAATTCTGGTGTGTTAACGATATGTACGCATTTGAAAATGTCGGATTTACAAACACCGTAAGCACATTTCGTTACCTAACGTGTGCTGATTGCGAACTTGGGCCATTGGGTTTCCATGATACTCAGGAAGGTCCAACTAATGCATATTATATTG                                                                                                                                                ]
[+] EMBL CD158243             [                                                                                                                                                         AACTATCCAATCCCTCCAAAGAATTCCCTACGGAACTAACTGAAGAATTCTGGTGTGTTAACGATATGTACGCATTTGAAAATGTCGGATTTACAAACACGGTAAGCACATTTCGTTACCTAACGTGTGCTGATTGCGAACTTGGGCCATTGGGTTTCCATGATACTCAGGAAGGTCCAACTAATGCATATTATATTG                                                                                                                                                ]
[+] EMBL CD158138             [                                                                                                                                                         AACTATCCAATCCCTCCAAAGAATTCCCTACGGAACTAACTGAAGAATTCTGGTGTGTTAACGATATGTACGCTTTTGAAAATGTCGGATTTACAAACACCGTAAG                                                                                                                                                                                                                                            ]
[-] EMBL CD169960             [                                                                                                                                                                                                                                                                  GCACATTTCGTTACCTAACGTGTGCTGATTGCGAACTTGGGCCATTGGGTTTCCATGATACTCAGGAAGGTCCAACTAATGCATATTATATTGC                                                                                                                                               ]




>consensus_8940#1
TGGATAATTACCTATCCCTCTGCCCTTCTAGCAAATCTGTCTTCCCAGGCACAAGTGGAT
CTTTTATTGGAGCTGAATGTGACATATGTTGGTAATCATGAGATTTTGGCCGAATGGAAC
AGCACAACTTGCCCGTGTTTGCTAGAAAATCGGAACTATCCAATCCCTCCAAAGAATTCC
CTACGGAACTAACTGAAGAATTCTGGTGTGTTAACGATATGTACGCATTTGAAAATGTCG
GATTTACAAACACCGTAAGCACATTTCGTTACCTAACGTGTGCTGATTGCGAACTTGGGC
CATTGGGTTTCCATGATACTCAGGAAGGTCCAACTAATGCATATTATATTGCGCTAACCC
GTACCACTACTGAAGTTAAATCAAGCTGCAAAAAATAAGTACATAATAAAGCACTATCCG
AATGATGCTGTATCAATAGTATGGTTCGCCTCTGGGAAGAAATTCTACTTACTTAACGTT
CACCAGTGTAAAATT

consensusID : consensus_8940#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 466
fasta sequence

                              [TTCTCCTGTTCTTTTTAGCACAACTTGCCCGTGTTTGCTAGAAAATCGGAACTATCCAATCCCTCCAAAGAATTCCCTACGGAACTAACTGAAGAATTTTGGTGTGTTAACGATATGTACGCATTTGAAAATGTCGGATTTACAAACACCGTAAGCACATTTCGTTACCTAACGTGTGCTGATTGCGAACTTGGGCCATTGGGTTTCCATGATACTCAGGAAGGTCCAACTAATGCATATTATATTGCGCTAACCCGTACCACTACTGAAGTTAAATCCACCTGCCAAAAATAAGTACATAATAAAGCCCTATCCGAATGATGCTGTATCAATAGTATGGTTCGCCTCTGGGAAGAAATTTTACTTACTTAACGTTCACCAGTGTAAAATTGTCAGCAGACCAGTCCCAATACACAAAATTAATCAAGTTTTGTATTACTTACTATTAGAAGGATTATACTTTTAT]

[-] EMBL CD076251             [TTCTCCTGTTCTTTTTAGCACAACTTGCCCGTGTTTGCTAGAAAATCGGAACTATCCAATCCCTCCAAAGAATTCCCTACGGAACTAACTGAAGAATTTTGGTGTGTTAACGATATGTACGCATTTGAAAATGTCGGATTTACAAACACCGTAAGCACATTTCGTTACCTAACGTGTGCTGATTGCGAACTTGGGCCATTGGGTTTCCATGATACTCAGGAAGGTCCAACTAATGCATATTATATTGCGCTAACCCGTACCACTACTGAAGTTAAATCCACCTGCCAAAAATAAGTACATAATAAAGCCCTATCCGAATGATGCTGTATCAATAGTATGGTTCGCCTCTGGGAAGAAATTTTACTTACTTAACGTTCACCAGTGTAAAATTGTCAGCAGACCAGTCCCAATACACAAAATTAATCAAGTTTTGTATTACTTACTATTAGAAGGATTATACTTTTAT]




>consensus_8940#2
TTCTCCTGTTCTTTTTAGCACAACTTGCCCGTGTTTGCTAGAAAATCGGAACTATCCAAT
CCCTCCAAAGAATTCCCTACGGAACTAACTGAAGAATTTTGGTGTGTTAACGATATGTAC
GCATTTGAAAATGTCGGATTTACAAACACCGTAAGCACATTTCGTTACCTAACGTGTGCT
GATTGCGAACTTGGGCCATTGGGTTTCCATGATACTCAGGAAGGTCCAACTAATGCATAT
TATATTGCGCTAACCCGTACCACTACTGAAGTTAAATCCACCTGCCAAAAATAAGTACAT
AATAAAGCCCTATCCGAATGATGCTGTATCAATAGTATGGTTCGCCTCTGGGAAGAAATT
TTACTTACTTAACGTTCACCAGTGTAAAATTGTCAGCAGACCAGTCCCAATACACAAAAT
TAATCAAGTTTTGTATTACTTACTATTAGAAGGATTATACTTTTAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8940#0      GAATAAAGTTCGCTGAATGTCGTCTGTAGAATTTTGTGACTCAACTGACGCTAATGTTCA 60
consensus_8940#2      ------------------------------------------------------------
consensus_8940#1      -----------------------------TGGATAATTACCTATCC--CTCTGCCCTTCT 29
                                                                                  

consensus_8940#0      AAGAACTCAGGATGGATACAATCAATTCAATATTCTTTGTCCACGGTGTTCCAGTATTGT 120
consensus_8940#2      ------------------------------------------------------------
consensus_8940#1      AGCAAATCTGTCTTCCCAGGCACAAGTGGATCTTTTATTGGAGCTGAATGTGACATATGT 89
                                                                                  

consensus_8940#0      CCTTCGCAAGAATACAGCAAAGCTAGCCAACAAACCACACAACTTGCCCGTGTTTGCTAG 180
consensus_8940#2      -----------------TTCTCCTGTTCTTTTTA--GCACAACTTGCCCGTGTTTGCTAG 41
consensus_8940#1      TGGTAATCATGAGAT--TTTGGCCGAATGGAACA--GCACAACTTGCCCGTGTTTGCTAG 145
                                            *          *   ***********************

consensus_8940#0      AAAATCGGAACTATCCAATCCCTCCAAAGAATTCCCTACGGAACTAACTGAAGAATTCTG 240
consensus_8940#2      AAAATCGGAACTATCCAATCCCTCCAAAGAATTCCCTACGGAACTAACTGAAGAATTTTG 101
consensus_8940#1      AAAATCGGAACTATCCAATCCCTCCAAAGAATTCCCTACGGAACTAACTGAAGAATTCTG 205
                      ********************************************************* **

consensus_8940#0      GTGTGTTAACGATATGTACGCATTTGAAAATGTCGGATTTACAAACACCGTAAGCACATT 300
consensus_8940#2      GTGTGTTAACGATATGTACGCATTTGAAAATGTCGGATTTACAAACACCGTAAGCACATT 161
consensus_8940#1      GTGTGTTAACGATATGTACGCATTTGAAAATGTCGGATTTACAAACACCGTAAGCACATT 265
                      ************************************************************

consensus_8940#0      TCGTTACCTAACGTGTGCTGATTGCGAACTTGGGCCATTGGGTTTCCATGATACTCAGGA 360
consensus_8940#2      TCGTTACCTAACGTGTGCTGATTGCGAACTTGGGCCATTGGGTTTCCATGATACTCAGGA 221
consensus_8940#1      TCGTTACCTAACGTGTGCTGATTGCGAACTTGGGCCATTGGGTTTCCATGATACTCAGGA 325
                      ************************************************************

consensus_8940#0      AGGTCCAACTAATGCATATTATATTGCGCTAACCCGTACCACTACTGAAGTTAAATCAAG 420
consensus_8940#2      AGGTCCAACTAATGCATATTATATTGCGCTAACCCGTACCACTACTGAAGTTAAATCCAC 281
consensus_8940#1      AGGTCCAACTAATGCATATTATATTGCGCTAACCCGTACCACTACTGAAGTTAAATCAAG 385
                      ********************************************************* * 

consensus_8940#0      CTGCAAAAAATAAGTACATAATAAAGCACTATCCGAATGATGCTGTATCAATAGTATGGT 480
consensus_8940#2      CTGCCAAAAATAAGTACATAATAAAGCCCTATCCGAATGATGCTGTATCAATAGTATGGT 341
consensus_8940#1      CTGCAAAAAATAAGTACATAATAAAGCACTATCCGAATGATGCTGTATCAATAGTATGGT 445
                      **** ********************** ********************************

consensus_8940#0      TCGCCTCTGGGAAGAAATTCTACTTACTTAACGTTCACCAGTGTAAAATTGTCAGCAGAC 540
consensus_8940#2      TCGCCTCTGGGAAGAAATTTTACTTACTTAACGTTCACCAGTGTAAAATTGTCAGCAGAC 401
consensus_8940#1      TCGCCTCTGGGAAGAAATTCTACTTACTTAACGTTCACCAGTGTAAAATT---------- 495
                      ******************* ******************************          

consensus_8940#0      CAGTCCCAATACACAAAATTAATCAAGTTTTGTATTACTTACTATTAGAAGGATTATACT 600
consensus_8940#2      CAGTCCCAATACACAAAATTAATCAAGTTTTGTATTACTTACTATTAGAAGGATTATACT 461
consensus_8940#1      ------------------------------------------------------------
                                                                                  

consensus_8940#0      TTTA- 604
consensus_8940#2      TTTAT 466
consensus_8940#1      -----