cluster # 8974

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Schistosoma mansoni
cluster # 8974 cluster # 8974 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8974#0 length = 595 sequences # 7

consensus_8974#1 length = 465 sequences # 1

consensusID : consensus_8974#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 595
fasta sequence

                              [GCGGGATATTTGAGGTCCTGACGGTTATGGTGAGATATGGGCTTGCTGCTCAGGAGAGGTCATTTTCACCTTCAGAAAGCTTTAGTCGAGTATCATGTGTGAAAAGGTCACTCATGAAAGGAAAATGTCGAAGTTTGTCTGCTCTAGCCCAGCCAAAATTCA-CTGACGCTCGTCATTTTAACTCTCTCACAGCATGCTCTGTGCAAGTAGAACCTTTGAGTTCGCTTCCAGTCGAGTACGCTTCAGTAGTGACTAAGCCGTGCTCGATAGTCTGCGAGGTAGCATCGATTCTGAATCAAGAAGAGGATTTTCAAATACAAATAAATAGAGACGAACCTGTCAACATAGAATGCCATATAGCTCTCCCTGTTCTACCACTGTCTCTACAGGACTATGCATCTCCTAAACCCAGCCTTGTACCTGACAGTATTTCTATGTACACTAATATCATCGGGGGTCGCACAATTTGGTAAATTCTATTCAAGTCGTAAATGGAACATCATAAACTAAACTCCTGTTCGTTTGCTTGGCATGGACAAAATGATCTCTATTGTTTATGTCATTCCTTTGTGATTGCACTGATAATATTTCGTAA]

[+] EMBL CD134124             [GCGGGATATTTGAGGTCCTGACGGTTATGGTGAGATATGGGCTTGCTGCTCAGGAGAGGTCATTTTCACCTTCAGAAAGTTTTAGTCGAGTATCATGTGTGAAAAGGTCACCCATGAAAGGAAAATGTCGAAGTTTGTCTGCTCTAGCCCAGCCAAAATTCC CTGACGCTCGTCATTTCAACTCTCTCACAGCATGCTGTGTGCAAGTAGAACCTTTGAGTTCGCTTCCAGTCGAGTACGCTTCAGTAGTGACTAAGCCGTGCTCGATAGTCTGCGAGGTAGCATCGATTCTGAATCAAGAAGAGGATTTTCAAATACAAATAAACAGAGACGAACCTGTTAACATAGAATGCCATATAGCTCTCCCTGTTCTACCACTGTCTCTACAGGACTATGCATCTCCTAAACCCAGCCTTGTACCTGACAGTATTTCTATGTACACTAATATCATCGGGGGTCGCACAATTTGGTNAATTCTATTNCAGTCGTAAATGGAACATCATAAACTAAACTCCTGTTCGTTTG                                                                      ]
[-] EMBL CD151772             [  GGGATATTTGGGGTCCTCACGGTTATGGTGAGATATGGGCTTGCTGCTCAGGACAGGTCATTTTCACCTTCAGAAAGCTTTAATCGAGTATCATGTGTGAAAAGGTCACTCATGAAAGGAAAATGTCGAAGTTTGTCTGCTTTAGCCCAGCCAAAATTCATCTGACGCTCGTCATTTTAACTCTCTCA                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD155750             [                                                                 TCACCTTCAGAAAGCTTTAGTCGAGTATCATGTGTGAAAAGGTCACTCATGAAAGGAAAATGTCGAAGTTTGTCTGCTCTAGCCCAGCCAAAATTCA CTGACGCTCGTCATTTTAACTCTCTCACAGCATGCTCTGTGCAAGTAGAACCTTTGAGTTCGCTTCCAGTCGAGTACGCTTCAGTAGTGACTAAGCCGTGCTCGATAGTCTGCGAGGTAGCATCGATTCTGAATCAAGAAGAGGATTTTCAAATACAAATAAATAGAGACGAACCTGTCAACATAGAATGCCATATAGCTCTCCCTGTTCTACCACTGTCTCTACAGGACTATGCATCTCCTAAACCCAGCCTTGTACCTGACAGTATTTCTATGTACACTAATATCATCGGGGGTCGCACAATTTGGTAAATTCTATTCAAGTCGTANATGGAATATCA                                                                                             ]
[-] EMBL CD155616             [                                                                  CACCTTCAGAAAGCTTTAGTCGAGTATCATGTGTGAAAAGGTCACTCATGAAAGGAAAATGTCGAAGTTTGTCTGCTCTAGCCCAGCCAAAATTCA CTGACGCTCGTCATTTTAACTCTCTCACAGCATGCTCTGTGCAAGTAGAACCTTTGAGTTCGCTTCCAGTCGAGTACGCTTCAGTAGTGACTAAGCCGTGCTCGATAGTCTGCGAGGTAGCATCGATTCTGAATCAAGAAGAGGATTTTCAAATACAAATAAATAGAGACGAACCTGTCAACATAGAATGCCATATAGCTCTCCCTGTTCTACCACTGTCTCTACAGG                                                                                                                                                                                                             ]
[-] EMBL CD155564             [                                                                  CACCTTCAGAAAGCTTTAGTCGAGTATCATGTGTGAAAAGGTCACTCATGAAAGGAAAATGTCGAAGTTTGTCTGCTCTAGCCCAGCCAAAATTCA CTGACGCTCGTCATTTTAACTCTCTCACAGCATGCTCTGTGCAAGTAGAACCTTTGAGTTCGCTTCCAGTCGAGTACGCTTCAGTAGTGACTAAGCCGTGCTCGATAGTCTGCGAGGTAGCATCGATTCTGAATCAAGAAGAGGATTTTCAAATACAAATAAATAGAGACGAACCTGTCAACATAGAATGCCATATAGCTCTCCCTGTTCTACCACTGTCTCTACAGG                                                                                                                                                                                                             ]
[-] EMBL CD141373             [                                                                                                                                                                                                                                                                                                                            TACAAATAAACAGAGGCGGACCTGTTAACATAGAATGCCATATAGCTCTCCCTGTTCTACCACTGTCTCTACAGGACTATGCATCTCCTAAACCCAGCCTTGTACCTGACAGTATTTCTATGTACACTAATATCATCGGGGGTCGCACAATTTGGTAAATTCTATTCAAGTCGTAAATGGAACATCATA                                                                                           ]
[-] EMBL CD086626             [                                                                                                                                                                                                                                                                                                                                                                                                                                             ATTTCTATGTACACTAATATCATCGGGGGTCGCACAATTTGGTAAATTCTATTCAAGTCGTAAATGGAATATCATAAACTAAACTCCTGTTCGTTTGCTTGGCATGGACAAAATGATCTCTATTGTTTATGTCATTCCTTTGTGATTGCACTGATAATATTTCGTAA]




>consensus_8974#0
GCGGGATATTTGAGGTCCTGACGGTTATGGTGAGATATGGGCTTGCTGCTCAGGAGAGGT
CATTTTCACCTTCAGAAAGCTTTAGTCGAGTATCATGTGTGAAAAGGTCACTCATGAAAG
GAAAATGTCGAAGTTTGTCTGCTCTAGCCCAGCCAAAATTCACTGACGCTCGTCATTTTA
ACTCTCTCACAGCATGCTCTGTGCAAGTAGAACCTTTGAGTTCGCTTCCAGTCGAGTACG
CTTCAGTAGTGACTAAGCCGTGCTCGATAGTCTGCGAGGTAGCATCGATTCTGAATCAAG
AAGAGGATTTTCAAATACAAATAAATAGAGACGAACCTGTCAACATAGAATGCCATATAG
CTCTCCCTGTTCTACCACTGTCTCTACAGGACTATGCATCTCCTAAACCCAGCCTTGTAC
CTGACAGTATTTCTATGTACACTAATATCATCGGGGGTCGCACAATTTGGTAAATTCTAT
TCAAGTCGTAAATGGAACATCATAAACTAAACTCCTGTTCGTTTGCTTGGCATGGACAAA
ATGATCTCTATTGTTTATGTCATTCCTTTGTGATTGCACTGATAATATTTCGTAA

consensusID : consensus_8974#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 465
fasta sequence

                              [TTTGGGGTCCTGACGGTTATGGTGAGATATGGGCTTGCTGCTCAGGAGAGGTCATTTTCACCTTCAGAAAGCTTTAGTCGAGTATCATGTGTGAAAAGGTCACTCATGAAAGGAAAATGTCGAAGTTTGTCTGCTCTAGGTAATCGTACATGCATGAAAATATTATCTCGTAGCCCAGCCAAAATTCACTGACGCTCGTCATTTTAACTCTCTCACAGCATGCTCTGTGCAAGTAGAACCTTTGAGTTCGCTTCCAGTCGAGTACGCTTCAGTAGTGACTAAGCCGTGCTCGATAGTCTGCGAGGTAGCATCGATTCTGAATCAAGAAGAGGATTTTCAAATACAAATAAATAGAGACGAACCTGTCAACATAGAATGCCATATAGCTCTCCCTGTTCTACCACTGTCTCTACAGGACTATGCATCTCCTAAACCCAGCCTTGTACCTCACAGTATTTCTATGTA]

[+] EMBL CD197471             [TTTGGGGTCCTGACGGTTATGGTGAGATATGGGCTTGCTGCTCAGGAGAGGTCATTTTCACCTTCAGAAAGCTTTAGTCGAGTATCATGTGTGAAAAGGTCACTCATGAAAGGAAAATGTCGAAGTTTGTCTGCTCTAGGTAATCGTACATGCATGAAAATATTATCTCGTAGCCCAGCCAAAATTCACTGACGCTCGTCATTTTAACTCTCTCACAGCATGCTCTGTGCAAGTAGAACCTTTGAGTTCGCTTCCAGTCGAGTACGCTTCAGTAGTGACTAAGCCGTGCTCGATAGTCTGCGAGGTAGCATCGATTCTGAATCAAGAAGAGGATTTTCAAATACAAATAAATAGAGACGAACCTGTCAACATAGAATGCCATATAGCTCTCCCTGTTCTACCACTGTCTCTACAGGACTATGCATCTCCTAAACCCAGCCTTGTACCTCACAGTATTTCTATGTA]




>consensus_8974#1
TTTGGGGTCCTGACGGTTATGGTGAGATATGGGCTTGCTGCTCAGGAGAGGTCATTTTCA
CCTTCAGAAAGCTTTAGTCGAGTATCATGTGTGAAAAGGTCACTCATGAAAGGAAAATGT
CGAAGTTTGTCTGCTCTAGGTAATCGTACATGCATGAAAATATTATCTCGTAGCCCAGCC
AAAATTCACTGACGCTCGTCATTTTAACTCTCTCACAGCATGCTCTGTGCAAGTAGAACC
TTTGAGTTCGCTTCCAGTCGAGTACGCTTCAGTAGTGACTAAGCCGTGCTCGATAGTCTG
CGAGGTAGCATCGATTCTGAATCAAGAAGAGGATTTTCAAATACAAATAAATAGAGACGA
ACCTGTCAACATAGAATGCCATATAGCTCTCCCTGTTCTACCACTGTCTCTACAGGACTA
TGCATCTCCTAAACCCAGCCTTGTACCTCACAGTATTTCTATGTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8974#0      GCGGGATATTTGAGGTCCTGACGGTTATGGTGAGATATGGGCTTGCTGCTCAGGAGAGGT 60
consensus_8974#1      --------TTTGGGGTCCTGACGGTTATGGTGAGATATGGGCTTGCTGCTCAGGAGAGGT 52
                              **** ***********************************************

consensus_8974#0      CATTTTCACCTTCAGAAAGCTTTAGTCGAGTATCATGTGTGAAAAGGTCACTCATGAAAG 120
consensus_8974#1      CATTTTCACCTTCAGAAAGCTTTAGTCGAGTATCATGTGTGAAAAGGTCACTCATGAAAG 112
                      ************************************************************

consensus_8974#0      GAAAATGTCGAAGTTTGTCTGCTCTAG--------------------------------- 147
consensus_8974#1      GAAAATGTCGAAGTTTGTCTGCTCTAGGTAATCGTACATGCATGAAAATATTATCTCGTA 172
                      ***************************                                 

consensus_8974#0      -CCCAGCCAAAATTCACTGACGCTCGTCATTTTAACTCTCTCACAGCATGCTCTGTGCAA 206
consensus_8974#1      GCCCAGCCAAAATTCACTGACGCTCGTCATTTTAACTCTCTCACAGCATGCTCTGTGCAA 232
                       ***********************************************************

consensus_8974#0      GTAGAACCTTTGAGTTCGCTTCCAGTCGAGTACGCTTCAGTAGTGACTAAGCCGTGCTCG 266
consensus_8974#1      GTAGAACCTTTGAGTTCGCTTCCAGTCGAGTACGCTTCAGTAGTGACTAAGCCGTGCTCG 292
                      ************************************************************

consensus_8974#0      ATAGTCTGCGAGGTAGCATCGATTCTGAATCAAGAAGAGGATTTTCAAATACAAATAAAT 326
consensus_8974#1      ATAGTCTGCGAGGTAGCATCGATTCTGAATCAAGAAGAGGATTTTCAAATACAAATAAAT 352
                      ************************************************************

consensus_8974#0      AGAGACGAACCTGTCAACATAGAATGCCATATAGCTCTCCCTGTTCTACCACTGTCTCTA 386
consensus_8974#1      AGAGACGAACCTGTCAACATAGAATGCCATATAGCTCTCCCTGTTCTACCACTGTCTCTA 412
                      ************************************************************

consensus_8974#0      CAGGACTATGCATCTCCTAAACCCAGCCTTGTACCTGACAGTATTTCTATGTACACTAAT 446
consensus_8974#1      CAGGACTATGCATCTCCTAAACCCAGCCTTGTACCTCACAGTATTTCTATGTA------- 465
                      ************************************ ****************       

consensus_8974#0      ATCATCGGGGGTCGCACAATTTGGTAAATTCTATTCAAGTCGTAAATGGAACATCATAAA 506
consensus_8974#1      ------------------------------------------------------------
                                                                                  

consensus_8974#0      CTAAACTCCTGTTCGTTTGCTTGGCATGGACAAAATGATCTCTATTGTTTATGTCATTCC 566
consensus_8974#1      ------------------------------------------------------------
                                                                                  

consensus_8974#0      TTTGTGATTGCACTGATAATATTTCGTAA 595
consensus_8974#1      -----------------------------