These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8992#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 671 fasta sequence [CAGAAACTGAAACTTCTTGCTGCATTCGTCGACGGGCAAAATACTTGCTAGCTTNTGAGACAACTTTTGTAAATCCATCTCCATGTGGAGTATCCTCTTCAAAGGTGTCTTGATTTACCTCGTAGAACTCTTTACGTGATTGCGAGAACTTATCAGAATCATCCTTGGAAACTGTTTCACTTTTTCGCTCTGTGCGATTAGCCCATGTAGACAATGAATCCACAGCATAAGAATTTTCAGGAAATGAGGCATGAGGCTTAATAGACATTAAAGGCGGTATTGAGGACATATCATTTCTTTTGTGGTAAAAAGTGGTTCCACATCGAGAGGCACGCGTGTTACTACGATAGGCACTATGTTGGTTTGTGGAACTTCCACCTGACAAGTGAGACTTTTCATTTTTCTGAACAGTTCCACTAATAACGGATGGGGAAGAAGAGACTTTAGAACATTCTGTTTGTAAAGCAATCCCACCAGCAGCAGGTCTTGAACTGGTACCAACCGCTTGCCGCCGACGCGTAAGAGACCGTGAGTTCATGTTATTTTCATCAAGCGGATCGTTAGCAGTATTTGAAACAACTTCACTATTGTTGCTTTGCTTTCCTTGATCAACAAAATCAACAGCAGAATCAGTATGACCACCATTACCACTACATTGATTGCCACCACGA] [-] EMBL CD194577 [CAGAAACTGAAACTTCTTGCTGCATTCGTCGACGGGCAAAATACTTGCTAGCTTNTGAGACAACTTTTGTAAATCCATCTCCATGTGGAGTATCCTCTTCAAAGGTGTCTTGATTTACCTCGTAGAACTCTTTACGTGATTGCGAGAACTTATCAGAATCATCCTTGGAAACTGTTTCACTTTTTCGCTCTGTGCGATTAGCCCATGTAGACAATGAATCCACAGCATAAGAATTTTCAGGAAATGAGGCATGAGGCTTAATAGACATTAAAGGCGGTATTGAGGACATATCATTTCTTTTGTGGTAAAAAGTGGTTCCACATCGAGAGGCACGCGTGTTACTACGATAGGCACTATGTTGGTTTGTGGAACTTCCACCTGACAAGTGAGACTTTTCATTTTTCTGAACAGTTCCACTAATAACGGATGGGGAAGAAGAGACTTTAGAACATTCTGTTTGTA ] [-] EMBL CD160363 [ CGATTAGCCCATGTAGACAATGAATCCACAGCATAAGAATTTTCAGGAAATGAGGCATGAGGCTTAATAGACATTAAAGGCGGTATTGAGGACATATCATTTCTTTTGTGGTAAAAAGTGGTTCCACATCGAGAGGCACGCGTGTTACTACGATAGGCACTATGTTGGTTTGTGGAACTTCCACCTGACAAGTGAGACTTTTCATTTTTCTGAACAGTTCCACTAATAACGGATGGGGAAGAAGAGACTTTAGAACATTCTGTTTGTAAAGCAATCCCACCAGCAGCAGGTCTTGAACTGGTACCAACCGCTTGCCGCCGACGCGTAAGAGACCGTGAGTTCATGTTATTTTCATCAAGCGGATCGTTAGCAGTATTTGAAACAACTTCACTATTGTTGCTTT ] [+] EMBL CD114520 [ TCCACATCGAGAGGCACGCGTGTTACTACGATAGGCACTATGTTGGTTTGTGGAACTTCCACCTGACAAGTGAGACTTTTCATTTTTCTGAACAGTTCCACTATTATCGGATGGGGAAGAAGAGACTTTAGAACATTCTGTTTGTAAAGCAATCCCACCAGCAGCAGGTCTTGAACTGGTACCAACCGCTTGCCGCCGACGCGTAAGAGACCGTGAGTTCATGTTATTTTCATCAAGCGGATCGTTAGCAGTATTTGAAACAACTTCACTATTGTTGCTTTGCTTTCCTTGATCAACAAAATCAACAGCAGAATCAGTATGACCACCATTACCACTACATTGATTGCCACCACGA] [+] EMBL CD114523 [ TCCACATCGAGAGGCACGCGTGTTACTACGATAGGCACTATGTTGGTTTGTGGAACTTCCACCTGACAAGTGAGACTTTTCATTTTTCTGAACAGTTCCACTAATAACGGATGGGGAAGAAGAGACTTTAGAACATTCTGTTTGTAAAGCAATCCCACCAGCAGCAGGTCTTGAACTGGTACCAACCGCTTGCCGCCGACGCGTAAGAGACCGTGAGTTCATGTTATTTTCATCAAGCGGATCGTTAGCAGTATTTGAAACAACTTCACTATTGTTGCTTTGCTTTCCTTGATCAACAAAATCAACAGCAGAATCAGTATGACCACCATTACCACTACATTGATTGCCACCACGA] consensusID : consensus_8992#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 546 fasta sequence [TTGGTCTTTTAATAATGACTTTGTCCTGATCCGTGAGGTTCTGCGGATTACGACGCACTCATGCATTGAGAATGAATGATGAAAGGACAAAACTAACGAAATACATCTGAAGGAGGCGCGGAACACTTATATATCTTACCGCAAATCAAGACTAAACAGACTATGTCTGTGTCTCCAAAACAACTATTACATGTATACTATGGCAGGATCAATTAGTAAGTCACTATCTTATCATTGCCGCCCGATTTGACGTTTGACTAACTGTCCGTGCGACCTCAGTGGTTGATTCGGGTGATGCTCGCCAAAGTTTCAATTCAGTGCCATACATAATCAATGCGTATGAGGTGTATATACGTACTGAAGATAAAAAGATACTGAGTAGTTGAACTTCAGCGTAACACAAGTTATTGCTTTAATCCAAAGCTTCGTAATCTTAAGAATATTTATTTAGAAGGAAAAAAAAATTATTTGTTTAAGTGGAACATAGAAGTNTTTTGTTTCTAATTGTAGACTTTGGATAAAATATGTTTAGATGGACAAGAAGAG] [+] EMBL CD091365 [TTGGTCTTTTAATAATGACTTTGTCCTGATCCGTGAGGTTCTGCGGATTACGACGCACTCATGCATTGAGAATGAATGATGAAAGGACAAAACTAACGAAATACATCTGAAGGAGGCGCGGAACACTTATATATCTTACCGCAAATCAAGACTAAACAGACTATGTCTGTGTCTCCAAAACAACTATTACATGTATACTATGGCAGGATCAATTAGTAAGTCACTATCTTATCATTGCCGCCCGATTTGACGTTTGACTAACTGTCCGTGCGACCTCAGTGGTTGATTCGGGTGATGCTCGCCAAAGTTTCAATTCAGTGCCATACATAATCAATGCGTATGAGGTGTATATACGTACTGAAGATAAAAAGATACTGAGTAGTTGAACTTCAGCGTAACACAAGTTATTGCTTTAATCCAAAGCTTCGTAATCTTAAGAATATTTATTTAGAAGGAAAAAAAAATTATTTGTTTAAGTGGAACATAGAAGTNTTTTGTTTCTAATTGTAGACTTTGGATAAAATATGTTTAGATGGACAAGAAGAG] consensusID : consensus_8992#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 417 fasta sequence [GACATCCATTTAATATATCGTACTGCTATGAAGATAACTAATGGTAAAAGTTATGAGACATGTCAGATTATATATGGTTAAGAGATGATAAGGACTAATAGCAAACCAGAGGATATGAAAGAGTAGATTGTAAAATTTTTAGGGTTAGAAAAATAAAACTTGAGCAACTCACAAGAATTTAGGACATTTGAGCTTCTTTTGATCTGCCTTAATTGATCATCATCCATAAGATTAGTGAGTTATCTGTCTATTTGGAATAAGAAAAATAAAAGGACAGAAATAATGTCGTTTTAACGATTAGAGGAATTCGAAATCTGAAAGTGATGGTAAGGAGCAGAAAGCCATGATTAATAATCGACTTCTTTTGTAGGCTGTATTATCCTTAGATTATTATCCTATCTCGTACATCGATCACAC] [+] EMBL CD127133 [GACATCCATTTAATATATCGTACTGCTATGAAGATAACTAATGGTAAAAGTTATGAGACATGTCAGATTATATATGGTTAAGAGATGATAAGGACTAATAGCAAACCAGAGGATATGAAAGAGTAGATTGTAAAATTTTTAGGGTTAGAAAAATAAAACTTGAGCAACTCACAAGAATTTAGGACATTTGAGCTTCTTTTGATCTGCCTTAATTGATCATCATCCATAAGATTAGTGAGTTATCTGTCTATTTGGAATAAGAAAAATAAAAGGACAGAAATAATGTCGTTTTAACGATTAGAGGAATTCGAAATCTGAAAGTGATGGTAAGGAGCAGAAAGCCATGATTAATAATCGACTTCTTTTGTAGGCTGTATTATCCTTAGATTATTATCCTATCTCGTACATCGATCACAC] consensusID : consensus_8992#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 326 fasta sequence [AGTTTGTTTAAATAGCCGCGATTATTGATCGTGCTAAGGTAGCATAATATATAGTCTTTTAATTGTAGACTTGTGAATGGTTTAATGAGGTGTGATTAAGGTGATAGTCTATCATCTGAATTTAGTTTAGTGGTTAGGAACCCACTGTTACATTATTAGACGGAAAGACCCCAAGAGCTTTTGTTGTGTTAGATTTGNTTGGNGTAAATGTAGATTATTCATTTATTTNTAGATCCTTCATGGATAAAAGGATAAAGNNACCTTGGCGGATAACTGAGTAAAGGACAGGGAGAGNGTCCTATTGATCTGTTTATTACTACCTCGAT] [+] EMBL SM220 [AGTTTGTTTAAATAGCCGCGATTATTGATCGTGCTAAGGTAGCATAATATATAGTCTTTTAATTGTAGACTTGTGAATGGTTTAATGAGGTGTGATTAAGGTGATAGTCTATCATCTGAATTTAGTTTAGTGGTTAGGAACCCACTGTTACATTATTAGACGGAAAGACCCCAAGAGCTTTTGTTGTGTTAGATTTGNTTGGNGTAAATGTAGATTATTCATTTATTTNTAGATCCTTCATGGATAAAAGGATAAAGNNACCTTGGCGGATAACTGAGTAAAGGACAGGGAGAGNGTCCTATTGATCTGTTTATTACTACCTCGAT] consensusID : consensus_8992#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 257 fasta sequence [TGTTTTGGGAGTTAAATGAACCATTATCACGCCTCAGGATGTAGGCCGAGATTCTTCGGAAGTTACGAGTGCGATGCTCCTTCTAACAACCAGAGCAACAATTTTTATAGGTACATGGAACGTCCGGACAATGTGAGAGACCGGGAAGATCAGTCAAATAGCAATGGAAATGAGGAGATACAAATCGGCGGTACTTGGGATTAGTGAAACCCATTGGACACAAGTTGGACAGCAGAAGCTAGATACGGGAGAGATGC] [+] EMBL CD166252 [TGTTTTGGGAGTTAAATGAACCATTATCACGCCTCAGGATGTAGGCCGAGATTCTTCGGAAGTTACGAGTGCGATGCTCCTTCTAACAACCAGAGCAACAATTTTTATAGGTACATGGAACGTCCGGACAATGTGAGAGACCGGGAAGATCAGTCAAATAGCAATGGAAATGAGGAGATACAAATCGGCGGTACTTGGGATTAGTGAAACCCATTGGACACAAGTTGGACAGCAGAAGCTAGATACGGGAGAGATGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8992#2 ------------------------------------------------------------ consensus_8992#3 ------------------------------------------------------------ consensus_8992#4 ------------------------------------------------------------ consensus_8992#0 CAGAAACTGAAACTTCTTGCTGCATTCGTCGACGGGCAAAATACTTGCTAGCTTNTGAGA 60 consensus_8992#1 ------------------------------------------------------------ consensus_8992#2 ------------------------------------------------------------ consensus_8992#3 ------------------------------------------------------------ consensus_8992#4 ------------------------------------------------------------ consensus_8992#0 CAACTTTTGTAAATCCATCTCCATGTGGAGTATCCTCTTCAAAGGTGTCTTGATTTACCT 120 consensus_8992#1 TTGGTCTTTTAATAATGACTTTGTCCTGATCCGTGAGGTTCTGCGGATTACGACGCACTC 60 consensus_8992#2 ----------------------------GACATCCATTTAATATATCGTACT-GCTATGA 31 consensus_8992#3 ---------------------------------------AGTTTGTTTAAATAGCCGCGA 21 consensus_8992#4 ------------------------------------------------------------ consensus_8992#0 CGTAGAACTCTTTACGTGATTGCGAGAACTTATCAGAATCATCCTTGGAAACTGTTTCAC 180 consensus_8992#1 ATGCATTGAGAATGAATGATGAAAGGACAAAACTAACGAAATACATCTGAAG-GAGGCGC 119 consensus_8992#2 AGATAACTAATGGTAAAAGTTATGAGACA-TGTCAGATTATATATGGTTAAGAGATGATA 90 consensus_8992#3 TTATTGATCGTGCTAAG-GTAGCATAATA-TAT-AGTCTTTTAATTGT--AGACTTGTGA 76 consensus_8992#4 -----------------------------------------------------TGTTTTG 7 consensus_8992#0 TTTTTCGCTCTGTGCGATTAGCCCATGTA-GACAATGAATCCACAGCATAAGAATTTTCA 239 consensus_8992#1 GGAACACTTATATATCTTACCGCAAATCAAGACTAAACAGACTATGTCTGTGTCTCCAAA 179 consensus_8992#2 AGGACTAA---TAGCAAACCA-GAGGATATGAAAGAGTAGATTGTAAA------ATT--T 138 consensus_8992#3 ATGGTTTA---ATGAGGTGTG-ATTAAGGTGATAGTCTATCATCTGAA------TTTAGT 126 consensus_8992#4 GGAGTTAA---ATGAACCATT-ATC-ACGCCTCAGGATGTAGGCCGAG------ATTC-T 55 consensus_8992#0 GGAAATGAGGCATGAGGCTTA-ATAGACATTAAAGGCGGTATTGAGGACATATCATTTCT 298 consensus_8992#1 ACAACTATTACATGTATACTATGGCAGGATCAATTAGTAAGTCACTATCTTATCATTGCC 239 * * ** consensus_8992#2 TTAG-GGTTAGAAAAATAAAACTTGAGCAACTCACAAGAATTTAGGACATTTGAGCTTCT 197 consensus_8992#3 TTAGTGGTTAGGAACCCACTGTTACATTATTAGACGGAAA----GACCCCAAGAGCTTTT 182 consensus_8992#4 TCGGAAGTTACGAGTGCGATGCTCCTTCTAACAACCAGAG---------CAACAATTTTT 106 consensus_8992#0 TTTGTGGTAA--AAAGTGGTTCCACATCGAGAGGCACGCGTGT-TACTACGATAGGCACT 355 consensus_8992#1 GCCCGATTTGACGTTTGACTAACTGTCCGTGCGACCTCAGTGGTTGATTCGGGTGATGCT 299 * * * consensus_8992#2 TTTGATCTGCCTTAATTGATCATCATCCATA--AGATTAGT----GAGTTATCTGTCTAT 251 consensus_8992#3 GTTG---TGTTAGATTTGNTTGGNGTAAATGT-AGATTATT----CATTTATTTNTAGAT 234 consensus_8992#4 ATAGG--TACATGGAACGTCCGGACAATGTG--AGAGACCG----GGAAGATCAGTCAAA 158 consensus_8992#0 ATGTTGGTTTGTGGAACTTCCACCTGACAAGTGAGACTTTT----CATTTTTCTGAACAG 411 consensus_8992#1 CGCCAA-AGTTTCAATTCAGTGCCATACATAATCAATGCGTATGAGGTGTATATACGTAC 358 * * * consensus_8992#2 TTGGAATAAGAA-AAATAAAAGGACAGAAA--TAATGTCGTTTTAACGATTAGAGGAATT 308 consensus_8992#3 CCTTCATGG------ATAAAAGG------A--TAAAGNNACCTTGGCGGATAACTGAGTA 280 consensus_8992#4 TAGCAATGG----AAATGAGGAGATACAAA--TCG-GCGGTACTTGGGATTAGTGAAACC 211 consensus_8992#0 TTCCACTAATAACGGATGGGGAAGAAGAGACTTTAGAACATTCTGTTTGTAAAGCAATCC 471 consensus_8992#1 TGAAGATAAAAAGATACTGAGTAGTTGAACTTCAGCGTAACACAAGTTATTGCTTTAATC 418 * * * consensus_8992#2 CG--------AAATCTGAAAGTGATGGTAAGGAGCAGAAAGCCATGATTAATAATCGACT 360 consensus_8992#3 AA--------GGACAGGGAGAGNGTCCTATTGATCTGT---TTATTACTACC--TCGAT- 326 consensus_8992#4 CATT------GGACACAAGTTGGACAGCAGAAGCTAGA----TACGGGAGAGATGC---- 257 consensus_8992#0 CACCAGCAGCAGGTCTTGAACTGGTACCAACCGCTTGCCGCCGACGCGTAAGAGACCGTG 531 consensus_8992#1 CAAAGCTTCGTAATCTTAAGAATAT-TTATTTAGAAGGAAAAAAAAATTATTTGTTTAAG 477 * * * consensus_8992#2 TCTTTTGTAGGCTGTATTATCCTTAGATTATTATCCTATCTCGTACATCGATCACAC--- 417 consensus_8992#3 ------------------------------------------------------------ consensus_8992#4 ------------------------------------------------------------ consensus_8992#0 AGTTCATGTTATTTTCATCAAGCGGATCGTTAGCAGTATTTGAAACAACTTCACTATTGT 591 consensus_8992#1 TGGAACATAGAAGTNTTTTGTTTCTAATTGTAGACTTTGGATAAAATATGTTTAGATGGA 537 consensus_8992#2 ------------------------------------------------------------ consensus_8992#3 ------------------------------------------------------------ consensus_8992#4 ------------------------------------------------------------ consensus_8992#0 TGCTTTGCTTTCCTTGATCAACAAAATCAACAGCAGAATCAGTATGACCACCATTACCAC 651 consensus_8992#1 CAAGAAGAG--------------------------------------------------- 546 consensus_8992#2 -------------------- consensus_8992#3 -------------------- consensus_8992#4 -------------------- consensus_8992#0 TACATTGATTGCCACCACGA 671 consensus_8992#1 -------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||