cluster # 9004

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Schistosoma mansoni
cluster # 9004 cluster # 9004 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9004#0 length = 697 sequences # 2

consensus_9004#1 length = 674 sequences # 6

consensusID : consensus_9004#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 697
fasta sequence

                              [AATGACGTAAATTATTCCTGATTCAAGTGAGTTCTTTCCAATTTTTTTCATGTCGTTTTCGGTCTAACATTGCACTCTATCATAGACATAAGTTTGGAGTCATACTCCCGATAGTAGAAACTTATGTTCTCGACGCAACTAATGTCCATTCATCTCATTGGTACGCAGCAACCGTCGTGTTTGAAGCCGCATTACCAGCCGATTAGTAATGATTATGTTCATATTATCTATTCATCGACATGTAAATCTGAATGCTGTATCATCTACTACGCATCAAAAATACTTGGTTACTGCAATTAAGCATTCTATTTCCATTGCATGGTATACGAGAACATAGAGTTTAGAGCTAGTCTCTCATAGATACACTCTTGTTCGTCACATTCAAGTCAGTCTCCAATCGCCGTCATCGATCATCATATGTATTGGTACTTTTATTATGCCTTAGTACGGTTTAGTAACAAACGAGGTTGAGCGCATATCCCTCTAACTACACAAATCACGCTAGGCTTCATGACCAAAAAGGAATACGACTCCGCATATCTCGTCTCCGCAGTCACTATCCTGTTCCTCTGGTCATTCAGCCAATACATATTTAACGATAACCCAGCGCAACGACAACTTCGCATTTTATTATCACTATCAATAGCAGTATAGCACGAATATCACCCGTTGATGCAGTCATCATCGTACGACTGAA]

[+] EMBL CD069528             [AATGACGTAAATTATTCCTGATTCAAGTGAGTTCTTTCCAATTTTTTTCATGTCGTTTTCGGTCTAACATTGCACTCTATCATAGACATAAGTTTGGAGTCATACTCCCGATAGTAGAAACTTATGTTCTCGACGCAACTAATGTCCATTCATCTCATTGGTACGCAGCAACCGTCGTGTTTGAAGCCGCATTACCAGCCGATTAGTAATGATTATGTTCATATTATCTATTCATCGACATGTAAATCTGAATGCTGTATCATCTACTACGCATCAAAAATACTTGGTTACTGCAATTAAGCATTCTATTTCCATTGCATGGTATACGAGAACATAGAGTTTAGAGCTAGTCTCTCATAGATACACTCTTGTTCGTCACATTCAAGTCAGTCTCCAATCGCCGTCATCGATCATCATATGTATTGGTACTTTTATTATGCCTTAGTACGGTTTAGTAACAAACGAGGTTGAGCGCATATCCCTCTAACTACACAAATCACGCTAGGCTTCATGACCAAAAAGGA                                                                                                                                                                             ]
[+] EMBL CD072855             [                                                                                                                                                                                                                                                                                                                                                                                                                            ATCATATGTATTGGGACTTTTATTATGCCTTAATACGGTTTAGTAACAAACGAGGTTGAGCGCATATCCCTCTAACTACACAAACCACGCTAGGCTTCATGACCAAAAAGGAATACGACTCCGCATATCTCGTCTCCGCAGTCACTATCCTGTTCCTCTGGTCATTCAGCCAATACATATTTAACGATAACCCAGCGCAACGACAACTTCGCATTTTATTATCACTATCAATAGCAGTATAGCACGAATATCACCCGTTGATGCAGTCATCATCGTACGACTGAA]




>consensus_9004#0
AATGACGTAAATTATTCCTGATTCAAGTGAGTTCTTTCCAATTTTTTTCATGTCGTTTTC
GGTCTAACATTGCACTCTATCATAGACATAAGTTTGGAGTCATACTCCCGATAGTAGAAA
CTTATGTTCTCGACGCAACTAATGTCCATTCATCTCATTGGTACGCAGCAACCGTCGTGT
TTGAAGCCGCATTACCAGCCGATTAGTAATGATTATGTTCATATTATCTATTCATCGACA
TGTAAATCTGAATGCTGTATCATCTACTACGCATCAAAAATACTTGGTTACTGCAATTAA
GCATTCTATTTCCATTGCATGGTATACGAGAACATAGAGTTTAGAGCTAGTCTCTCATAG
ATACACTCTTGTTCGTCACATTCAAGTCAGTCTCCAATCGCCGTCATCGATCATCATATG
TATTGGTACTTTTATTATGCCTTAGTACGGTTTAGTAACAAACGAGGTTGAGCGCATATC
CCTCTAACTACACAAATCACGCTAGGCTTCATGACCAAAAAGGAATACGACTCCGCATAT
CTCGTCTCCGCAGTCACTATCCTGTTCCTCTGGTCATTCAGCCAATACATATTTAACGAT
AACCCAGCGCAACGACAACTTCGCATTTTATTATCACTATCAATAGCAGTATAGCACGAA
TATCACCCGTTGATGCAGTCATCATCGTACGACTGAA

consensusID : consensus_9004#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 674
fasta sequence

                              [TAAGATGCCCCATCAATAAAAATGTAGTTGCCGCTTCCTTTTGCCTTCTGATTTTATACACCGTTAAGATTGGTATAATAACGGTTATCGAAGTGAACTATTATTGAAGCACGGCACTACATAACTGGTAATCCCGACGTACGAACGCGAAAACATAATTGGTTAGCCCGACATGCGAACACGCAACAGATTTGGAGGCCTCGCCGAACGAACATGGACCAGAATCGACAACCTCGACGTACGAACTCACAACATGATTGGCAAGCCGTATTTGGAACACGCAGCAAGATTGGCAACAGCAACGAGCGAACACAAATCAAAAATGGAACCGCCGACGACATATTTCGTTATGATCCGAATAATCATCATATGCTCATTATTACAATGATGTTATATCATCATCTAACGTGGAATTATTATTTTTGTTCGTATTGACATTAAACTATGACATTTATGCAGTCGAATCACTAATCGAACAAATTATAATTATATAGACATTACACGTTATGATATTCAAAACTCACTGGATTATTTTTATCATCTAATGACGTAACATTTTCCTGATTTAAGTAAGTTCGTTCTAA-TTTTTTTCATGTCATTTCCGGTCTAATATTACACTCTATCATAGACATAAGTTTGGAGTCATACTCCCGATAGTAGGAACTTATGTTCTC]

[+] EMBL CD069295             [TAAGATGCCCCATCAATAAAAATGTAGTTGCCGCTTCCTTTTGCCTTCTGATTTTATACACCGTTAAGATTGGTATAATAACGGTTATCGAAGTGAACTATTATTGAAGCACGGCACTACATAACTGGTAATCCCGACGTACGAACGCGAAAACATAATTGGTTAGCCCGACATGCGAACACGCAACAGATTTGGAGGCCTCGCCGAACGAACATGGACCAGAATCGACAACCTCGACGTACGAACTCACAACATGATTGGCAAGCCGTATTTGGAACACGCAGCAAGATTGGCAACAGCAACGAGCGAACACAAATCAAAAATGGAACCGCCGACGACATATTTCGTTATGATCCGAATAATCATCATATGCTCATTATTACAATGATGTTATATCATCATCTAACGTGGAATTATCATTTCAGTTCGTATTGACATTAAACTATGACATTTATGCAGTCGAATCACTAATCGA                                                                                                                                                                                                        ]
[+] EMBL CD195774             [                              CCGCTTCCTTTTGCCTTCTGATTTTATACACCGTTAAGATTGGTATAATAACGGTTATCGAAGTGAACTATTATTGAAGCACGGCACTACATAACTGGTAATCCCGACGTACGAACGCGTAAACATAATTGGTTAGCCCGACATGCGAACACGCAACAGATTTGGAGGCCTCGCCGAACGAACATGGACCAGAATCGACAACCTCGACGTACGAACTCACAACATGATTGGCAAGCCGTATTTGGAACACGCAGCAAGATTGGCAACAGCAACGAGCGAACACAAATCANAAATGGAACCGCCG                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CD069247             [                                                                                                                                                                                                                      TGGACCAGAATCGACAACCTCGACGTACGAACTCACAACATGATTGGCAAGCCGTATTTGGAACACGCAGCAAGATTGGCAACAGCAACGAGCGAACACAAATCAAAAATGGAACCGCCGACGACATATTTCGTTATGATCCGAATAATCATCATATGCTCATTATTACAATGATGTTATATCATCATCTAACGTGGAATTATTATTTTTGTTCGTATTGACATTAAACTATGACATTTATGCAGTCGAATCACTAATCGAACAAATTATAATTATATAGACATTACACGTTATGATATTCAAAACTCACTGGATTATTTTTATTATCCAATGACGTAAAATTTTTCTGATTTAAGTGAGTTCTTTCCAA TTTTTTTCATGTCATTTTCGGTCTAATATTACACTCTATCATAGACATAAGTTTGGAGTCACACTCCCGATAGTAGGAACTTAT      ]
[-] EMBL CD062887             [                                                                                                                                                                                                                                 CGACAACCTCGACGTACGAACTCACAACATGATTGGCAAGCCGTATTTGGAACACGCAGCAAGATTGGCAACAGCAACGAGCGAACACGAATCAAAAATGGAACCGCCGACGACATATTTCGTTATGATCCGAATAATCATCATATGCTCATTATTACAATAATGTTATATCATCATCTGACGTGGAATTATTATTTTTGTTCGCATTGACATTAAACTATGACA                                                                                                                                                                                                                                 ]
[-] EMBL CD192397             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TATGATATTCAAAACTCACTGGATTATTTTTATCATCTAATGACGTAACATTTTCCTGATTTAAGTAAGTTCGTTCTAATTTTTTTTCATGTCATTTCCGGTCTAATATTACACTCTATCATAGACATAAGTTTGGAGTCATACTCCCGATAGTAGGAACTTATGTTCTC]
[-] EMBL CD192554             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TATGATATTCAAAACTCACTGGATTATTTTTATCATCTAATGACGTAACATTTTCCTGATTTAAGTAAGTTCGTTCTAATTTTTTTTCATGTCATTTCCGGTCTAATATTACACTCTATCATAGACATAAGTTTGGAGTCATACTCCCGATAGTAGGAACTTATGTTCTC]




>consensus_9004#1
TAAGATGCCCCATCAATAAAAATGTAGTTGCCGCTTCCTTTTGCCTTCTGATTTTATACA
CCGTTAAGATTGGTATAATAACGGTTATCGAAGTGAACTATTATTGAAGCACGGCACTAC
ATAACTGGTAATCCCGACGTACGAACGCGAAAACATAATTGGTTAGCCCGACATGCGAAC
ACGCAACAGATTTGGAGGCCTCGCCGAACGAACATGGACCAGAATCGACAACCTCGACGT
ACGAACTCACAACATGATTGGCAAGCCGTATTTGGAACACGCAGCAAGATTGGCAACAGC
AACGAGCGAACACAAATCAAAAATGGAACCGCCGACGACATATTTCGTTATGATCCGAAT
AATCATCATATGCTCATTATTACAATGATGTTATATCATCATCTAACGTGGAATTATTAT
TTTTGTTCGTATTGACATTAAACTATGACATTTATGCAGTCGAATCACTAATCGAACAAA
TTATAATTATATAGACATTACACGTTATGATATTCAAAACTCACTGGATTATTTTTATCA
TCTAATGACGTAACATTTTCCTGATTTAAGTAAGTTCGTTCTAATTTTTTTCATGTCATT
TCCGGTCTAATATTACACTCTATCATAGACATAAGTTTGGAGTCATACTCCCGATAGTAG
GAACTTATGTTCTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9004#0      ----------AATGACGTAAATTATTCCTGATTCAAGTGAGTTCTTTCCAATTTTTTTCA 50
consensus_9004#1      TAAGATGCCCCATCAATAAAAATGTAGTTGCCGCTTCCTTTTGCCTTCTGATTTTATACA 60
                                 ** *   *** * *   **   *       * * ***  ***** * **

consensus_9004#0      T-GTCGTTTTCGGTCTAACATTGCACTCTATCATAGAC-AT-----AAGTTTGGAGTCAT 103
consensus_9004#1      CCGTTAAGATTGGTATAATAACGGTTATCGAAGTGAACTATTATTGAAGCACGGCACTAC 120
                        **     * *** *** *  *          *  ** **     ***   **    * 

consensus_9004#0      ACTCCCGATAGTAGAAACTTATGTTCTCGACGCAACTAATGTCCA-TTCATCTCATTGGT 162
consensus_9004#1      ATAACTGGTAATCCCGACGTACGAACGCGAAAACATAATTGGTTAGCCCGACATGCGAAC 180
                      *   * * ** *    ** ** *  * ***    *  * **   *   *  *        

consensus_9004#0      ACGCAGCAACCGTCGTGTTTGAAGCCGCATTACCAGCCGATTAGTAATGATTATGTTCAT 222
consensus_9004#1      ACGCAACAGATTTGGAGGCCTC-GCCGAACGAACA-TGGACCAGAATCGACAACCTCGAC 238
                      ***** **    * * *      **** *  * **   **  ** *  **  *  *  * 

consensus_9004#0      ATTATCTATTCATCGACATGTAAATCTGAATGCTGTATCATCTACTACGCATCAAAAATA 282
consensus_9004#1      GT-ACGAACTCA-CAACATG---ATTGGCAAGCCGTATT-TGGAACACGCAGCAAGA--- 289
                       * *   * *** * *****   **  * * ** ****  *  *  ***** *** *   

consensus_9004#0      CTTGGTTACTGCAATTAAGCATTCTATTTCCATTGCATGGTATACGAGAACATAGAGTTT 342
consensus_9004#1      -TTGGCAACAGCAACGAGCGAACACAAATCAAAAATGGAACCGCCGACGACATA---TTT 345
                       ****  ** ****  *   *    *  ** *            ***  *****   ***

consensus_9004#0      AGAGCTAGTCTC--TCATAGATACACTCTTGTTCGTCACATTCAAGTCA-GTCTCCAATC 399
consensus_9004#1      CGTTATGATCCGAATAATCATCATATGCTCATT-ATTACAATGATGTTATATCATCATCT 404
                       *   *  **    * **    * *  **  **  * *** * * ** *  **  **   

consensus_9004#0      GCCGTCATCGATCATCATATGTATTGGTACTTTTATTATGCCTTAGTACGGTTTAGTAAC 459
consensus_9004#1      AACGTGG--AATTATTATTTTTGTTCGTATTGACATTAAAC--TATGACATTTATGCAGT 460
                        ***     ** ** ** * * ** *** *   ****  *  **  **  **  * *  

consensus_9004#0      AAACGAGGTTGAGCGCATATCCCTCTAACTACACAAATCACGCTAGGCTTCATGACCAAA 519
consensus_9004#1      CGA-ATCACTAATCGAACAAAT-TATAATTATATAGA---CATTACACGTTATGATATTC 515
                        *      * * ** * *    * *** ** * * *   *  **  * * ****     

consensus_9004#0      AAGGAATACGACTCCGCATATCTCGTCTCCGCAGTCACTATCCTGTTCCTCTG-GTCATT 578
consensus_9004#1      AAAACTCACTGGATTATTTTTATCATCTAATGACGTAACATTTTCCTGATTTAAGTAAGT 575
                      **     **         * * ** ***    *   *  **  *  *  * *  ** * *

consensus_9004#0      CAGCCAATACATATTTAACGATAACCCAGCGCAACGACAACTTCGCATTTTATTATCACT 638
consensus_9004#1      TCGTTCTAATTTTTTTCATGTCATTTCCGGTC-----TAATATTACACTCTATCATAGAC 630
                        *     *  * *** * *  *   * *  *      **  *  ** * *** **    

consensus_9004#0      ATCAAT--AGCAGTATAGCACGAATATCACCCGTTGATGCAGTCATCATCGTACGACTGA 696
consensus_9004#1      ATAAGTTTGGAGTCATACTCCCGATAGTAGGAACTTATGTTCTC---------------- 674
                      ** * *   *    ***   *  ***  *     * ***   **                

consensus_9004#0      A 697
consensus_9004#1      -