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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9005#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 900 fasta sequence
[TCGGCTCGAGGACGATATATCATCCTCTGGCTCTGAAACAGGCGATTGTTCTTCAAGTCCTAGCAAACACATAATCAGTGTGCACGATCGCAGAAAAAACTATAATAATAAACGCAAACATATTCCACGCTCCTCATCAGAGGATTCCCAAACATCTTCTTTCAGTGATGAACCTCGTTTTTCCCCGACTCATCATAATCCAGTAAAAACTAAAAGTGATCGCCGTCATTTATCACCGCCCTATGCCTACCGAATGGATTATAATAAGTCACATAAAAGCAAACATCGTTCATCATTGCGA-TCTGCACCAAATGGTGAAAGTGGTCGTATATTGCGTGAGCACTCTAACCATCGTCTAGTTTCGAGTCGACATCACGATCATCACCGAAGGTAAATTGTACATATGAATGATTTAATTTTACTCTGTACAAAAATTTTATGAGTATTAACTTTTTTCACTGGTTGCCTGTACGGTATGATTGATAGATTATCTACCAGATTGCAATAAATTATTTGCACTATCCTATCGTTTTGTGGTGTTTTACGTATTTTCAGTTCTTGTTTAAAAAATACCATTCAAAACGGATTCTTGAAAAATTATATTACTTTTGCGTTCCAGTCTTGGCAAGAAATTATATAAAATGTTTTAACATTGGAAACGTTTTCTTACTCTGCTAGTCGAAGTTTCAAATTGAATCCACTGTACTTTTCTTAATTGATTCTGGTATGTATCAGTATTGATGATATGCTTTCTCCACTACATCGGGTGATGTGCNAGTTTGTATAGTCTTCAGGAGATAGTCTGACGAATCCTCTAATTGATCACAGAATGAAGTATCGTCAANNTGACTCTCGTTTGGGCCTGAATAAACACGTNCTATGACAGGAGATAAGCTCTCA]
[+] EMBL CD081468 [TCGGCTCGAGGACGATATATCATCCTCTGGCTCTGAAACAGGCGATTGTTCTTCAAGTCCTAGCAAACACATAATCAGTGTGCACGATCGCAGAAAAAACTATAATAATAAACGCAAACATATTCCACGCTCCTCATCAGAGGATTCCCAAACATCTTCTTTCAGTGATGAACCTCGTTTTTCCCCGACTCATCATAATCCAGTAAAAACTAAAAGTGATCGCCGTCATTTATCACCGCCCTATGCCTACCGAATGGATTATAATAAGTCACATAAAAGCAAACATCGTTCATCATTGCGA TCTGCACCAAATGGTGAAAGTGGTCGTATATTGCGTGAGCACTCTAACCATCGTCTAGTTTCGAGTCGACATCACGATCATCACCGAAGGTAAATTGTACATATGAATGATTTAATTTTACTCTGTACAAAAATTTTATGAGTATTAACTTTTTTCACTGGTTGCCTGTACGGTATGATTGATAGATTATCTACCAGATTGCAATAAATTATTTGCACTATCCTATCGTTTTGTGGTGTTTTACGTATTTTCAGTTCTTGTTTAAAAAATACCATTCAAAACGGATTCTTGAAAAATTATATTACTTTTGCGTTCCAGTCTTGGCAAGAAATTATATAAAATGTTTTAACATTGGAAACGTTTTCTTACTCTGCTAGTCGAAGTTTCAAATTGAATCCACTGTACTTTTCTTAATTGATTCTGGTATGTATCAGTATTGATGATATGCTTTCTCCACTACATCGGGTGATGTGCNAGTTTGTATAGTCTTCAGGAGATAGTCTGACGAATCCTCTAATTGATCACAGAATGAAGTATCGTCAANNTGACTCTCGTTTGGGCCTGAATAAACACGTNCTATGACAGGAGATAAGCTCTCA]
[-] EMBL AI976628 [ ACGCTCCTCATCAGAGGATTCCCAAACATCTTCTTTCAGTGATGAACCTCGTTTTTCCCCGACTCATCATAATCCAGTAAAAACTAAAAGTGATCGCCGTCATTTATCACCGCCCTATGCCTACCGAATGGATTATAATAAGTCACATAAAAGCCAACATCGTTCATCATTGCGATTATGCCCCAAATGGTGAAAGTGGTCGTATATTGCGTGAGCACTATAACCATCGTCTAGTTTCGAGTGGACATCACGATCATCACCGAAGGTAAATTGTACATATGAATGATTTAATTTTACTCTGTACAAAAATTTTATGAGTATTAACTTTTTTCACTGGTTGCCTGTACGGTATGATTGATAGATTATCTACCAGATTGCAATAAATT ]
[-] EMBL SMW791 [ ATGCCTACCGAATGGATTATAATAAGTCACATAAAAGCAAACATCGTTCATCATTGCGA TCTGCACCAAATGGTGAAAGTGGTCGTATATTGCGTGAGCACTCTAACCATCGTCTAGTTTCGAGTCGACATCACGATCATCACCGAAGGTAAATTGTACATATGAATGATTTAATTTTACTCTGTACAAAANTTTTATGAGTATTAACTTTTTTCACTGGTTGCCTGTACGGTATGATTGATAGATTATCTACCAGATTGCAATAAATT ]
consensusID : consensus_9005#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 497 fasta sequence
[TGTACGGTATGATTGATAGATTATCTACCAGATTGCAATAAATTATTTGCACTATCCTATCGTTTTGTGGTGTTTTACGTATTTTCAGTTCTTGTTTAAAAAATACCATTCAAAACGGATTCTTGAAAAATTATATTACTTTTGCGTTCCAGTCTTGGCAAGAAAATTATATAAAATGTTTTAACATTGGAAACGTTTTCTTACTCTGCTAGTCGAAGTTTCAAATTGAATCCACTGTACTTTTCTTTAATTGATTCTGTTAATGTATCAAGTATTGATTGATATGCTTTTCTCCAACTACCATCGGGTGGATGTGCAAGTTTTGTTATAAGTCTATCAAGGAGTATAAGTACTGAGCGAATTCGCTCTAAATTTGTATTCACCAGAGATGAAAGGTAATCGGTCAAAATTTGTACATCTTCGTTTTGGGGCACTGAAAATTAAAAACAACGTTTCTTATTGATCAATGATGTAATAAATGCTACTACTAATATATA]
[-] EMBL CD075293 [TGTACGGTATGATTGATAGATTATCTACCAGATTGCAATAAATTATTTGCACTATCCTATCGTTTTGTGGTGTTTTACGTATTTTCAGTTCTTGTTTAAAAAATACCATTCAAAACGGATTCTTGAAAAATTATATTACTTTTGCGTTCCAGTCTTGGCAAGAAAATTATATAAAATGTTTTAACATTGGAAACGTTTTCTTACTCTGCTAGTCGAAGTTTCAAATTGAATCCACTGTACTTTTCTTTAATTGATTCTGTTAATGTATCAAGTATTGATTGATATGCTTTTCTCCAACTACCATCGGGTGGATGTGCAAGTTTTGTTATAAGTCTATCAAGGAGTATAAGTACTGAGCGAATTCGCTCTAAATTTGTATTCACCAGAGATGAAAGGTAATCGGTCAAAATTTGTACATCTTCGTTTTGGGGCACTGAAAATTAAAAACAACGTTTCTTATTGATCAATGATGTAATAAATGCTACTACTAATATATA]
[-] EMBL CD076910 [ TCTTCAATTGATTCTGTTAATGAATCAAGTATTGATTGATATGCTTTTCTCCACCTACCATCGGGTGGATGTGCAAGTTTTGTTATAAGTCTATCAAGGAGTATAAGTACTGAGCGAATTCGCTCTAAATTTGTATTCACCAGAGATGAAAGGTAATCGGTCAAAATTTGTACATCTTCGTTTTGGGGCACTGAAAATTAAAAACAACGTTTCTTATTGATCAATGATGTAATAAATGCTACTAATAATATATA]
consensusID : consensus_9005#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 420 fasta sequence
[ATAATTCAATAAACTTATTGACAAATAACTCCAAATCTCGTAATTATCGACAAAAATTAAATGATATATCATCCTCTGGCTCTGAAACAGGCGATAGTTCTTCAAGTCCTAGCAAACACATAATCAGTGTGCACGATCGCAGAAAAAAACTATAATAATAAACGCAAACATATTCCACGCTCCTCATCAGAGGATTCCCAAACATCTTCTTTCA-GTGATGAACCTCGTTTTTCCCCGACTCATCATAATCCAGTAAAAACTAAAAGTGATCGCCGTCATTTATCACCGCCCTATGCCTACCGAATGGATTATAATAAGTCACATAAAAGCAAACATCGTTCATCATTGCGATCTGCACCAAATGGTGAAAGTGGTCGTATATTGCGTGAGCACTCTAACCATCGTCTAGTTTCGAGTCGA]
[-] EMBL CD202251 [ATAATTCAATAAACTTATTGACAAATAACTCCAAATCTCGTAATTATCGACAAAAATTAAATGATATATCATCCTCTGGCTCTGAAACAGGCGATAGTTCTTCAAGTCCTAGCAAACACATAATCAGTGTGCACGATCGCAGAAAAAAACTATAATAATAAACGCAAACATATTCCACGCTCCTCATCAGAGGATTCCCAAACATCTTCTTTCA GTGATGAACCTCGTTTTTCCCCGACTCATCATAATCCAGTAAAAACTAAAAGTGATCGCCGTCATTTATCACCGCCCTATGCCTACCGAATGGATTATAATAAGTCACATAAAAGCAAACATCGTTCATCATTGCGATCTGCACCAAATGGTGAAAGTGGTCGTATATTGCGTGAGCACTCTAACCATCGTCTAGTTTCGAGTCGA]
[-] EMBL CD060074 [ TGATATATCATCCTCTGGCTCTGAAACAGGCGATAGTTCTTCAAGTCCTAGCAAACACATAATCAGTGTGCACGATCGCA TAAAAAACTATAATAATAAACGCAAACATATTCCACGCTCCTCATCAGAGGATTCCCAACCGTGTTC CCCACCTGATGAACCTCGTTTTTCCCCGACCCAGCATAATCCAGTAAAAACTAAAAGTGACCGCCGTCATCTATCA ]
consensusID : consensus_9005#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 408 fasta sequence
[GCGAATCGCTCTAAATTTGTATTCACCAGAGATGAAAGGTAATCGGTCAGAATTTGTACATCTTCGTTTTGGGGCACTGCTTCACTAGTTATCCAATCACCAAAAATTTGTTGAAGTTCTGTCAATGTTTTATTGGTGAACAAGCCACTCGGGTCTTCTATTGCCTGTGTTAAACAACCGAGTTGTGGTATTTCAGGTTTTATGGAGTTCATAGGAGTAGGTGTACTTATGTGTTTTGAAATGGTTTTACAATTCGCCTTTTGAAGACGTGCACTTTTGACTACCGATAATTTCCCTCCCTTACATACGCGCTTTGTCTGCAACTTTCTGCCATTCACTGATATGTTTCTTTGTTTTACTGGAGTTGTGATGGGCATATAATTTGAACTACATGATGTCACATTTTTC]
[+] EMBL CD125905 [GCGAATCGCTCTAAATTTGTATTCACCAGAGATGAAAGGTAATCGGTCAGAATTTGTACATCTTCGTTTTGGGGCACTGCTTCACTAGTTATCCAATCACCAAAAATTTGTTGAAGTTCTGTCAATGTTTTATTGGTGAACAAGCCACTCGGGTCTTCTATTGCCTGTGTTAAACAACCGAGTTGTGGTATTTCAGGTTTTATGGAGTTCATAGGAGTAGGTGTACTTATGTGTTTTGAAATGGTTTTACAATTCGCCTTTTGAAGACGTGCACTTTTGACTACCGATAATTTCCCTCCCTTACATACGCGCTTTGTCTGCAACTTTCTGCCATTCACTGATATGTTTCTTTGTTTTACTGGAGTTGTGATGGGCATATAATTTGAACTACATGATGTCACATTTTTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9005#0 --------------------------------------------------------TCGG 4
consensus_9005#2 --------ATAATTCAATAAACTTATTGACAAATAACTCCAAATC--TCGTAATTATCGA 50
consensus_9005#1 TGTACGGTATGATT-GATAGATTATCTACCAGATTGCAATAAATTATTTGCACTATCCTA 59
consensus_9005#3 ------------------------------------------------------------
consensus_9005#0 CTCGAG---GACGATATATCATCCTCTGGCTCTGAAACAGGCGATTGTTCTTCAAG---- 57
consensus_9005#2 CAAAAATTAAATGATATATCATCCTCTGGCTCTGAAACAGGCGATAGTTCTTCAAG---- 106
consensus_9005#1 TCGTTTTGTGGTGTTTTACGTATTTTCAGTTCTTGTTTAAAAAATACCATTCAAAACGGA 119
consensus_9005#3 ----------------------------GCGAATCGCTCTAAATTTGTATTCACCAGAGA 32
* * *
consensus_9005#0 TCCTAGCAAACACAT-AATCAGTGTGCA---CGATCGCAGAAAAAA-CTATAATAATAAA 112
consensus_9005#2 TCCTAGCAAACACAT-AATCAGTGTGCA---CGATCGCAGAAAAAAACTATAATAATAAA 162
consensus_9005#1 TTCTTGAAAAATTAT-ATTACTTTTGCGTTCCAGTCTTGGCAAGAAAATTATATAAAATG 178
consensus_9005#3 TGAAAGGTAATCGGTCAGAATTTGTACATCTTCGTTTTGG-GGCACTGCTTCACTAGTTA 91
* * ** * * * * * * * * * *
consensus_9005#0 CGCAAACATATTCCACGCTCCTCATCAGAGGATTCCCAAACATCTTCTTTCAGTGATGAA 172
consensus_9005#2 CGCAAACATATTCCACGCTCCTCATCAGAGGATTCCCAAACATCTTCTTTCAGTGATGAA 222
consensus_9005#1 TTTTAACATTGGAAACGTTTTCTTACTCTGCTAGTCGAAGTTTCAAATTGAATCCACTGT 238
consensus_9005#3 TCCAATCACCAAAAATTTGTTGAAGTTCTGTCAAT---GTTTTATTGGTGAACAAGCCAC 148
* ** * * * * *
consensus_9005#0 CCTCGTTTTTCCCCGACTCATCATAATCCAGTAAAAACTAAAAGTGATCGCCGTCATTTA 232
consensus_9005#2 CCTCGTTTTTCCCCGACTCATCATAATCCAGTAAAAACTAAAAGTGATCGCCGTCATTTA 282
consensus_9005#1 ACTTTTCTTTAATTGATTC-TGTTAATGTATCAAGTATTGATTGATATGCTTTTCTCCAA 297
consensus_9005#3 TCGGGTCTTCTATTGCCTG-TGTTAAACAACCGAGTTGTGGTATTTCAGGTTTTATGGAG 207
* * ** * * * *** * * * *
consensus_9005#0 TCACCGCCCTATGCCTACCGAATGGATTATAATAAGTC-ACATAAAAGCAAACATCGTTC 291
consensus_9005#2 TCACCGCCCTATGCCTACCGAATGGATTATAATAAGTC-ACATAAAAGCAAACATCGTTC 341
consensus_9005#1 CTACCATCGGGTGGATGT-GCAAGTTTTGTTATAAGTCTATCAAGGAGTATAAGTACTGA 356
consensus_9005#3 TTCATAG-GAGTAGGTGT--ACTTATGTGTTTTGAAATGGTTTTACAATTCGCCTTTTGA 264
* * * * * * * * *
consensus_9005#0 ATCATTGCGATCTG----------CACCAAATGGTGAAAGTGGTCGTATATTGCGTGAGC 341
consensus_9005#2 ATCATTGCGATCTG----------CACCAAATGGTGAAAGTGGTCGTATATTGCGTGAGC 391
consensus_9005#1 GCGAATTCGCTCTAAATTTGTATTCACCAGAGATGAAAGGTAATCGGTCAAAATTTGTAC 416
consensus_9005#3 AGACGTGCACTTTT--------------GACTACCGATAATTTCCCTCCCTTACATACGC 310
* * * * * * * * *
consensus_9005#0 ACTCTAACCATCGTCTAGTTTCGAGTCGACATCACGATCATCACCG-AAGGTAAATTGTA 400
consensus_9005#2 ACTCTAACCATCGTCTAGTTTCGAGTCGA------------------------------- 420
consensus_9005#1 ATCTTCGTTTTGGGGCACTGAAAATTAAAAACAACGTTTCTTATTG-ATCAATGATGTAA 475
consensus_9005#3 GCTTTGTCTGCAACTTTCTGCCATTCACTGATATGTTTCTTTGTTTTACTGGAGTTGTGA 370
* *
consensus_9005#0 CATATGAATGATTTAATTTTACTCTGTACAAAAATTTTATGAGTATTAACTTTTTTCACT 460
consensus_9005#2 ------------------------------------------------------------
consensus_9005#1 TAAATGCTACTACTAATATATA-------------------------------------- 497
consensus_9005#3 TGGGCATATAATTTGAACTACATGATGTCACATTTTTC---------------------- 408
consensus_9005#0 GGTTGCCTGTACGGTATGATTGATAGATTATCTACCAGATTGCAATAAATTATTTGCACT 520
consensus_9005#2 ------------------------------------------------------------
consensus_9005#1 ------------------------------------------------------------
consensus_9005#3 ------------------------------------------------------------
consensus_9005#0 ATCCTATCGTTTTGTGGTGTTTTACGTATTTTCAGTTCTTGTTTAAAAAATACCATTCAA 580
consensus_9005#2 ------------------------------------------------------------
consensus_9005#1 ------------------------------------------------------------
consensus_9005#3 ------------------------------------------------------------
consensus_9005#0 AACGGATTCTTGAAAAATTATATTACTTTTGCGTTCCAGTCTTGGCAAGAAATTATATAA 640
consensus_9005#2 ------------------------------------------------------------
consensus_9005#1 ------------------------------------------------------------
consensus_9005#3 ------------------------------------------------------------
consensus_9005#0 AATGTTTTAACATTGGAAACGTTTTCTTACTCTGCTAGTCGAAGTTTCAAATTGAATCCA 700
consensus_9005#2 ------------------------------------------------------------
consensus_9005#1 ------------------------------------------------------------
consensus_9005#3 ------------------------------------------------------------
consensus_9005#0 CTGTACTTTTCTTAATTGATTCTGGTATGTATCAGTATTGATGATATGCTTTCTCCACTA 760
consensus_9005#2 ------------------------------------------------------------
consensus_9005#1 ------------------------------------------------------------
consensus_9005#3 ------------------------------------------------------------
consensus_9005#0 CATCGGGTGATGTGCNAGTTTGTATAGTCTTCAGGAGATAGTCTGACGAATCCTCTAATT 820
consensus_9005#2 ------------------------------------------------------------
consensus_9005#1 ------------------------------------------------------------
consensus_9005#3 ------------------------------------------------------------
consensus_9005#0 GATCACAGAATGAAGTATCGTCAANNTGACTCTCGTTTGGGCCTGAATAAACACGTNCTA 880
consensus_9005#2 ------------------------------------------------------------
consensus_9005#1 ------------------------------------------------------------
consensus_9005#3 ------------------------------------------------------------
consensus_9005#0 TGACAGGAGATAAGCTCTCA 900
consensus_9005#2 --------------------
consensus_9005#1 --------------------
consensus_9005#3 --------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||