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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9007#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1381 fasta sequence
[TGGTTACGTTTTAGAATGTCCAAGACATGGCACCATCTATCGTAGTCGTGGTTACTGGTCTGGTAACGTAGAGCCAGAAATGAATCCTCAAGTACACTGGGAAATCGTACATGTTTGGCAAGGAGAAAAGTCAATACTTTCGGGTACTCATCCAGTTAGTCAGTTATTGTTAGATGGATTAACTGTCGTTTCTAGTCAAGTAAGTCAGTTGGCTGGTCCTCCA-GCACGTC-GTTTGGGAGATCT-TAT-TGCTGACAGCGTGGCTCCTCGGTATTGGCAACCCAACTCTAGTATTAAAGCATGTGCTGTTTGTAAGGTTGAATTTCAAGGTTCATCAGATGATTCTGTTTGCAGCCGTAGTTCACT-TATGAGACAAAAATCCACTACCGATAAAAAGCACTCAACATTATCTGCTGGTGATGATAGTCCTCAAAAAGATAAGGCGTCTACCGGCAAAAGATAATTCCATACTCAATCGGTCGTCATCGTTTTCAGATTCGTTAAATAAAGAAAAAAGTTCT-ACTAAACCATTGAAGCCTTTTATTGATGACTTATCGAAACATCATTGTCGAGCTTGAGGTAGAGGTGTCTGAGCTAAGTGTTCAACTGGGCGTTTGCCTGTTCC-AGATCATGGATATGGAAGTGATGGAGTACGTGTATGTGACCAGTGCTATGATGCTCGATTACAAGATAAAGTTATCGATTCAAAAACTCGTGTATCTGGAATGAATTATAACTCTCAAATCAATAACAATTCTTTAACTGGTCGGAAGGTAATTGAAATGTTATCTGCTACAGCTGATTATATAGCACCAATATATACTGGACCTAAAGAACTCGTTAAATCTCTTGCTCGTCCAGATTATTGGCAACCTGATGATCAATGTGTCTCGTGCAACGTATGTTCCGCCCCATTCGGCTCACGTTTAACTATTCATCATTGTCGTTCTTGCGGTCAGGGTGTTTGCGGGTTTTGTTCCCAGCATTATCAACCTGTGCCTAAAAGAGGTCTTGATTTCCCTTCACGTGTGTGCGATCGTTGTTACCAACCAAACTTAAAGGATTATGAAACTTCTCATCGTCCAACTGTATCTGAACACCGAAGCTTAGATTTGGCTGGTAACGTACCAAATCAGCAAATGCAACGACGGAAGCGTAACACTCAATACAACAATCCTAATGTAAACACTGCCCATAAAAAAAAATTCCGAGGGTTGAATTCACATTTTTCAACTGTGAAGTGTAGTTTATCAATGAGTTTATTTTTTTAACTCTTTAACATTCAGAAACACTTCTATATACATTGACGAACAAACACTGGATTATTGCTGCAATAATGTTAATGAATTTTACAAGTGACAAAAGGAATACGCCAATGCTACGT]
[+] EMBL CD170964 [TGGTTACGTTTTAGAATGTCCAAGACATGGCACCATCTATCGTAGTCGTGGTTACTGGTCTGGTAACGTAGAGCCAGAAATGAATCCTCAAGTACACTGGGAAATCGTACATGTTTGGCAAGGAGAAAAGTCAATACTTTCGGGTACTCATCCAGTTAGTCAGTTATTGTTAGATGGATTAACTGTCGTTTCTAGTCAAGTAAGTCAGTTGGCTGGTCCTCCA GCACGTC GTTTGGGAGATCT TAT TGCTGACAGCGTGGCTCCTCGGTATTGGCAAACCAACTCTAGTATTAAAGCATGTGCTGTTTGTAAGGTTGAATTTCAAGGTTCATCAGATGATTCTGTTTGCAGCCGTAGTTCACT TATGAGACAAAAATCCACTACCGATAAAAAGCACTCAACATTATCTGCTGGTGATGATAGTCCTCAAAAAGA ]
[-] EMBL CD132032 [ ACTTTCGGGTACTCATCCAGTTAGTCAGTTATTGTTAGATGGATTAACTGTCGTTTCTAGTCAAGTAAGTCAGTTGGCTGGTCCTCCA GCACGTC GTTTGGGAGATCT TAT TGCTGACAGCGTGGCTCCTCGGTATTGGCAACCCAACTCTAGTATTAAAGCATGTGCTGTTTGTAAGGTTGAATTTCAAGGTTCATCAGATGATTCTGTTTGCAGCCGTAGTTCACT TATGA ]
[+] EMBL CD060108 [ aggCCTCCATCCACGTCTGTTTGCGAGATCTATATATGCTGACAGCGTGGCTCCTCGGTATTGGCAACCCAACTCTAGTATTAAAGCATGTGCTGTTTGTAAGGTTGAATTTCAAGGTTCATCAGATGATTCTGTTTGCAGCCGTAGTTCACTATATGAGACAAAAATCCACTATCGATAACAAGCACTCAACATTATCTGCTGGTGATGATAGTCCTCAAAAAGATAAGGCGTCTACCGGCAAAAGATAATTCCATACTCAATCGGTCGTCATCGTTTTCAGATTCGTTAAATAAAGAAAAAAGTTCTAACTAAACCATTGAAGCCTTTTATTGATGACTTATCGAAACATCATTGTCGAGCTTGAGGTAGAGGTGTCTGAGCTAAGTGTTCAACTGGGCGTTTGCCTGTTCCAAGATCATGGATATGGAAGTGATGGAGTACGTGTA ]
[+] EMBL CD090293 [ ATAATTCCATACTCAATCGGTCGTCATCGTTTCCAGATTCGTTAAATAAAGAAAAAAGTTCT ACTAAACCATTGAAGCCTTTTATTGATGACTTATCGAAACATCATTGTCGAGCTTGTGGTAGAGGTGTCTGTGCTAAGTGTTCAACTGGCCGTTTGCCTGTTCC AGATCAAGGATATGGAAGTGATGGTGTACGTGTTTGTGACCAGTGCTATGATGCTCGATTACAAGATAAAGTTATCGATTCAAAAACTCGTGTATCTGGAATGAATTATAACTCTCAAATCAATAACAATTCTTTAACTGGTCGGAAGGTAATTGAAATGTTATCTGCTACAGCTGATTATATAGCACCAATATATACTGGACCTAAAGAACTCGTTAAATCTCTTGCTCGTCCAGATTATTGGCAACCTGATGATCAATGTGTCTCGTGCAACGTATGTTCCGCCCCATTCGGCTCACGTTTAACTA ]
[+] EMBL CD091088 [ TATCGATTCAAAAACTCGTGTATCTGGAATGAATTATAACTCTCAAATCAATAACAATTCTTTAACTGGTCGGAAGGTAATTGAAATGTTATCTGCTACAGCTGATTATATAGCACCAATATATACTGGACCTAAAGAACTCGTTAAATCTCTTGCTCGTCCAGATTATTGGCAACCTGATGATCAATGTGTCTCGTGCAACGTATGTTCCGCCCCATTCGGCTCACGTTTAACTATTCATCATTGTCGTTCTTGCGGTCAGGGTGTTTGCGGGTTTTGTTCCCAGCATTATCAACCTGTGCCTAAAAGAGGTCTTGATTTCCCTTCACGTGTGTGCGATCGTTGTTACCAACCAAACTTAAAGGATTATGAAACTTCTCATCGTCCAACTGTATCTGAACACCGAAGCTTAGATTTGGCTGGTAACGTACCAAATCAGCAAATGCAACGACGGAAGCG ]
[+] EMBL CD157592 [ TTAACTATTCATCATTGTCGTTCTTGCGGTCAGGGTGTTTGCGGGTTTTGTTCCCAGCATTATCAACCTGTGCCTAAAAGAGGTCTTGATTTCCCTTCACGTGTGTGCGATCGTTGTTACCAACCAAACTTAAAGGATTATGAAACTTCTCATCGTCCAACTGTATCTGAACACCGAAGCTTA ]
[-] EMBL CD091113 [ tnCGGNTTTTGTTCCCAGCATTATCAACCTGTGCCTAAAAGAGGTCTTGATTTCCCTTCACGTGTGTGCGATCGTTGTTACCAACCAAACTTAAAGGATTATGAAACTTCTCATCGTCCAACTGTATCTGAACACCGAAGCTTAGATTTGGCTGGTAACGTACCAAATCAGCAAATGCAACAACGGAAGCGTAACACTCAATACAACAATCCTAATGTAAACACTGCCCATAAAAAAAAATTCCGAGGGTTGAATTCACATTTTTCAACTGTGAAGTGTAGTTTATCAATGAGTTTATTTTTTTAACTCTTTAACATTCAGAAACACTTCTATATACATTGACGAACAAACACTGGATTATTGCTGCAATAATGTTAATGAATTTTACAAGTGACAAAAGGAATACGCCAATGCTACGT]
consensusID : consensus_9007#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 94 fasta sequence
[ACAACGATCGCACACACGTGAAGGGAAATCAAGACCTCTTTTAGGCACAGGTTGATAATGCTGGGAACAAATTTTTTTTTACACCCTGACCGCA]
[+] EMBL CD115617 [ACAACGATCGCACACACGTGAAGGGAAATCAAGACCTCTTTTAGGCACAGGTTGATAATGCTGGGAACAAATTTTTTTTTACACCCTGACCGCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9007#0 TGGTTACGTTTTAGAATGTCCAAGACATGGCACCATCTATCGTAGTCGTGGTTACTGGTC 60
consensus_9007#1 ------------------------------------------------------------
consensus_9007#0 TGGTAACGTAGAGCCAGAAATGAATCCTCAAGTACACTGGGAAATCGTACATGTTTGGCA 120
consensus_9007#1 ------------------------------------------------------------
consensus_9007#0 AGGAGAAAAGTCAATACTTTCGGGTACTCATCCAGTTAGTCAGTTATTGTTAGATGGATT 180
consensus_9007#1 ------------------------------------------------------------
consensus_9007#0 AACTGTCGTTTCTAGTCAAGTAAGTCAGTTGGCTGGTCCTCCAGCACGTCGTTTGGGAGA 240
consensus_9007#1 ------------------------------------------------------------
consensus_9007#0 TCTTATTGCTGACAGCGTGGCTCCTCGGTATTGGCAACCCAACTCTAGTATTAAAGCATG 300
consensus_9007#1 ------------------------------------------------------------
consensus_9007#0 TGCTGTTTGTAAGGTTGAATTTCAAGGTTCATCAGATGATTCTGTTTGCAGCCGTAGTTC 360
consensus_9007#1 ------------------------------------------------------------
consensus_9007#0 ACTTATGAGACAAAAATCCACTACCGATAAAAAGCACTCAACATTATCTGCTGGTGATGA 420
consensus_9007#1 ------------------------------------------------------------
consensus_9007#0 TAGTCCTCAAAAAGATAAGGCGTCTACCGGCAAAAGATAATTCCATACTCAATCGGTCGT 480
consensus_9007#1 ------------------------------------------------------------
consensus_9007#0 CATCGTTTTCAGATTCGTTAAATAAAGAAAAAAGTTCTACTAAACCATTGAAGCCTTTTA 540
consensus_9007#1 ------------------------------------------------------------
consensus_9007#0 TTGATGACTTATCGAAACATCATTGTCGAGCTTGAGGTAGAGGTGTCTGAGCTAAGTGTT 600
consensus_9007#1 ------------------------------------------------------------
consensus_9007#0 CAACTGGGCGTTTGCCTGTTCCAGATCATGGATATGGAAGTGATGGAGTACGTGTATGTG 660
consensus_9007#1 ------------------------------------------------------------
consensus_9007#0 ACCAGTGCTATGATGCTCGATTACAAGATAAAGTTATCGATTCAAAAACTCGTGTATCTG 720
consensus_9007#1 ------------------------------------------------------------
consensus_9007#0 GAATGAATTATAACTCTCAAATCAATAACAATTCTTTAACTGGTCGGAAGGTAATTGAAA 780
consensus_9007#1 ------------------------------------------------------------
consensus_9007#0 TGTTATCTGCTACAGCTGATTATATAGCACCAATATATACTGGACCTAAAGAACTCGTTA 840
consensus_9007#1 -----------------------ACAACGATCGCACACACGTGA---AGGGAAATCA--A 32
* * * * * ** ** * *** ** *
consensus_9007#0 AATCTCTTGCTCGTCCAGATTATTGGCAACCTGATGATCAATGTGTCTCGTGCAACGTAT 900
consensus_9007#1 GACCTCTTTTAGGCACAGG---TTGATAATGCTGGGAACAAATTTTTTTTTACACCCTGA 89
* ***** * *** *** ** ** *** * * * * ** * *
consensus_9007#0 GTTCCGCCCCATTCGGCTCACGTTTAACTATTCATCATTGTCGTTCTTGCGGTCAGGGTG 960
consensus_9007#1 CCGCA------------------------------------------------------- 94
*
consensus_9007#0 TTTGCGGGTTTTGTTCCCAGCATTATCAACCTGTGCCTAAAAGAGGTCTTGATTTCCCTT 1020
consensus_9007#1 ------------------------------------------------------------
consensus_9007#0 CACGTGTGTGCGATCGTTGTTACCAACCAAACTTAAAGGATTATGAAACTTCTCATCGTC 1080
consensus_9007#1 ------------------------------------------------------------
consensus_9007#0 CAACTGTATCTGAACACCGAAGCTTAGATTTGGCTGGTAACGTACCAAATCAGCAAATGC 1140
consensus_9007#1 ------------------------------------------------------------
consensus_9007#0 AACGACGGAAGCGTAACACTCAATACAACAATCCTAATGTAAACACTGCCCATAAAAAAA 1200
consensus_9007#1 ------------------------------------------------------------
consensus_9007#0 AATTCCGAGGGTTGAATTCACATTTTTCAACTGTGAAGTGTAGTTTATCAATGAGTTTAT 1260
consensus_9007#1 ------------------------------------------------------------
consensus_9007#0 TTTTTTAACTCTTTAACATTCAGAAACACTTCTATATACATTGACGAACAAACACTGGAT 1320
consensus_9007#1 ------------------------------------------------------------
consensus_9007#0 TATTGCTGCAATAATGTTAATGAATTTTACAAGTGACAAAAGGAATACGCCAATGCTACG 1380
consensus_9007#1 ------------------------------------------------------------
consensus_9007#0 T 1381
consensus_9007#1 -
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||