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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9010#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1154 fasta sequence
[TCGACGTACATTTTTGCTTGCTGTTCTTTTCGACATTATTTTAAGTTTCATTCTGTGGATTATATATGCTAAACAAACGTATCCTGGCAATGTTGGTCATGCAATGTTGGAAGAAATAAGCAATTATTCTTTCTCTAAATCACTTTTTGATACAGTTATGTTATCAGCTTTCCGGTTTGTTCTTATGGAAATTACTTATGGCGTAGTTCAAAGTCGCACTCCGTGGTGGTCCGCTATTTCAACTGGTTTAACAAGTTTAATTCTGGTTGTTAAGTGTTTCATTTTTGATTTTCATCAAAGGACTCCAGATAATCAGGGTCTAGCATATGCTGTTTTAATCACATCATTAATCATTTCATGGATTGAAACCACCTTCCTAATTTATCGTGTCATTCCTCAAGAAAAAGCTGCCAATCGTGTAACAATGTGTTTAAAAGAGCAGGATGAAACTCGAAGTTTGTTAAGTTCACGACTTGAAAATCGTGTTCCTTGGTATTCTGGTCTTTCTGTACGGTCTATGAGCAATGCAGATTTTTATACACCACAAGGTTCATTATTTGGAGATGAATCACCTGTAAAAATTCCG-AAATCGCATAATCTTGAAGCTGCTGTTGATGTAGCTGCTTTGTTACATCGTACCAATTCTTTACAAACGGAAATGTGGAATTTATATGAAAATGAAATTTGGGGTGATAATTCACCTTCTGTCAACATCAAGTATCCACTTCGATCTG-AAGCGTTACCTAATTATCCTGCTAAGGTTTATCGTCTAGAGGGTTTATTATCGGTTTCACCGTTCCATCTATTTAATGATATGGTTATAAATGTCCATGAAACGCCTAGCTGGAATACTACTCTGGCATCTGTTGAGTGTATCCAAGCTTTGGCTTCAGAGAATATTGACATCATACACAATATGGCTAAAGAGGCTGTCGGAGGTTTAATATCTGCCAGAGATTTTGTTCTGTTGAGATCATGGGGAATACATAACAATAATTGTTACTTTATATGTTGTACTTATGTTGAACATCCTAAATGTCCACCAATACCAAATTATGTACGTGCTGAACAAGTAATTAGTGCGTGTATATTTCGACCAATTCCTGATTGTCCAAATCAATGCAATTTAGTATGGTTCTTATGCAATGATTTAA]
[-] EMBL CD095673 [TCGACGTACATTTTTGCTTGCTGTTCTTTTCGACATTATTTTAAGTTTCATTCTGTGGATTATATATGCTAAACAAACGTATCCTGGCAATGTTGGTCATGCAATGTTGGAAGAAATAAGCAATTATTCTTTCTCTAAATCACTTTTTGATACAGTTATGTTATCAGCTTTCCGGTTTGTTCTTATGGAAATTACTTATGGCGTAGTTCAAAGTCGCACTCCGTGGTGGTCCGCTATTTCAACTGGTTTAACAAGTTTAATTCTGGTTGTTAAGTGTTTCATTTTTGATTTTCATCAAAGGACTCCAGATAATCAGGGTCTAGCATATGCTGTTTTAATCACATCATTAATCATTTCATGGATTGAAACCACCTTCCTAATTTA ]
[+] EMBL CD062136 [ CTTATGGCGTAGTTCAAAGTCGCACTCCGTGGTGGTCCGCTATTTCAACTGGTTTAACAAGTTTAATTCTGGTTGTTAAGTGTTTCATTTTTGATTTTCATCAAAGGACTCCAGATAATCAGGGTCTAGCATATGCTGTTTTAATCACATCATTAATCATTTCATGGATTGAAACCACCTTCCTAATTTATCGTGTCATTCCTCAAGAAAAAGCTGCCAATCGTGTAACAATGTGTTTAAAAGAGCAGGATGAAACTCGAAGTTTGTTAAGTTCACGACTTGAAAATCGTGTTCCTTGGTATTCTGGTCTTTCTGTACGGTCTATGAGCAATGCAGATTTTTATACACCACAAGGTTCATTATTTGGAGATGAATCACCTGTAAAAATTCCG AAATCGCATAATCTTGAAGCTGCTGTTGATGTAGCTGCTTTGTTACATCGTACCAATTCTTTACAAACGGAAATGTGGAATTTATATGAAAATGAAATTTGGGGTGATAATTCACCTTCTGTCAAGATCAAGTATCCACTTCGATCTGAAAGCG TACCTAATTATCCT ]
[+] EMBL CD062221 [ CTTATGGCGTAGTTCAAAGTCGCACTCCGTGGTGGTCCGCTATTTCAACTGGTTTAACAAGTTTAATTCTGGTTGTTAAGTGTTTCATTTTTGATTTTCATCAAAGGACTCCAGATAATCAGGGTCTAGCATATGCTGTTTTAATCACATCATTAATCATTTCATGGATTGAAACCACCTTCCTAATTTATCGTGTCATTCCTCAAGAAAAAGCTGCCAATCGTGTAACAATGTGTTTAAAAGAGCAGGATGAAACTCGAAGTTTGTTAAGTTCACGACTTGAAAATCGTGTTCCTTGGTATTTTGGTCTTTCTGTACGGTCTATGAGCAATGCAGATTTTTATACACCACAAGGTTCATTATTTGGAGATGAATCACCTGTAAAAATTCCG AAATCGCATAATCTTGAAGCTGCTGTTGATGTAGCTGCTTTGTTACATCGTACCAATTCTTTACAAACGGAAATGTGGAATTTATATGAAAATGAAATTTGGGGTGATAATTCACCTTCTGTCAACATCAAGTATCCACTTCGATCTG AAGCGTTACCTA ]
[+] EMBL CD116281 [ AATCATTTCATGGATTGAAACCACCTTCCTAATTTATCGTGTCATTCCTCAAGAAAAAGCTGCCAATCGTGTAACAATGTGTTTAAAAGAGCAGGATGAAACTCGAAGTTTGTTAAGTTCACGACTTGAAAATCGTGTTCCTTGGTATTCTGGTCTTTCTGTACGGTCTATGAGCAATGCCGATTTTTATACACCACAAGGTTCATTATTTGGAGATGAATCACCTGTAAAAATTCCG AAATCGCATAATCTTGAAGCTGCTGTTGATGTAGCTGCTTTGTTACATCGTACCAATTCTTTACAAACGGAAATGTGGAATTTATATGAAAATGAAATTTGGGGTGATAATTCACCTTCTGTCAACATCAAGTATCCACTTCGATCTG AAGCGTTACCTAATTATCCTGCTAAGGTTTATCGTCTAGAGGGTTTATTATCGGTTTCACCGTTCCATCTATTTAATGAT ]
[-] EMBL CD069124 [ gtnATTCTGGTCTTTCTGTACGGTCTATGAGCAATGCAGATTTTTATACACCACAAGGTTCATTATTTGGAGATGAATCACCTGTAAAAATTCCGAAAATCGCATAATCTTGAAGCTGCTGTTGATGTAGCTGCTTTGTTACATCGTACCAATTCTTTACAAACGGAAATGTGGAATTTATATGAAAATGAAATTTGGGGTGATAATTCACCTTCTGTCAACATCAAGTATCCCTTTCGATCTG AAGCGTTACCTAATTATCCTGCTAAGGTTTATCGTTTAGAGGGTTTATTATCGGTTTCACCGTTCCATCTATTTAATGATATGGTTATAAATGTCCATGAAACGCCTAGCTGGAATACTACTCTGGCATCTGTTGAGTGTATCCAAGCTTTGGCTTCAGAGGATATTGACATCATAt ]
[-] EMBL CD066727 [ TCAAGTATCCACTTCGATCTG AAGCGTTACCTAATTATCCTGCTAAGGTTTATCGTCTAGAGGGTTTATTATCTGTTTCACCGTTCCATCTATTTAATGATATGGTTATAAATGTCCATGAAACGCCTAGCTGGAATACTACTCTGACATCTGTTGAGTGTATCCAAGCTTTGGCTTCAGAGAATATTGACATCATACACAATATGGCTAAAGAGGCTGTCGGAGGTTTAATATCTGCCAGAGATTTTGTTCTGTTGAGATCATGGGGAATACATAACAATAATTGTTACTTTATATGTTGTACTTATGT ]
[+] EMBL CD077756 [ AGAAT TCGTCA CGTGGACAATATGGCTAAAGAGGCTGTCGGAGGTTTAATATCTGCCAGAGATTTTGTTCTGTTGAGATCATGGGGAATACATAACAATAATTGTTACTTTATATGTTGTACTTCTGTTGAACATCCTAAATGTCCACCAATACCAAATTATGTACGTGCTGAACAAGTAATTAGTGCGTGTATATTTCGACCAATTCCTGATTGTCCAAATCAATGCAATTTAGTATGGTTCTTATGCAATGATTTAA]
consensusID : consensus_9010#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 429 fasta sequence
[GGTCGACTCTAGAGTGATCCCCTCATAGGTTCGCAGGGAAACCACCTTCCTAATTTATCGTGTCATTCCTCAAGAAAAAGCTGCCAATCGTGTAACAATGTGTTTAAAAGAGCAGGATGAAACTCGAAGTTTGTTAAGTTCACGACTTGAAAATCGTGTTCCTTGGTATTCTGGTCTTTCTGTACGGGCTATGAGCAATGCAGATTTTTATACACCACAAGGTTCATTATTTGGAGATGAATCACCTGTAAAAATTCCGAAATCGCATAATCTTGAAGCTGCTGTTGATGTAGCTGCTTTGTTACATCGTACCAATTCTTTACAAACGGAAATGTGGAATTTATATGAAAATGAAATTTGGGGTGATAATTCACCTTCTGTCAACATCAAGTATCCACTTCGATCTGAAGCGTTACCTAATTACCCTGC]
[+] EMBL CD060737 [GGTCGACTCTAGAGTGATCCCCTCATAGGTTCGCAGGGAAACCACCTTCCTAATTTATCGTGTCATTCCTCAAGAAAAAGCTGCCAATCGTGTAACAATGTGTTTAAAAGAGCAGGATGAAACTCGAAGTTTGTTAAGTTCACGACTTGAAAATCGTGTTCCTTGGTATTCTGGTCTTTCTGTACGGGCTATGAGCAATGCAGATTTTTATACACCACAAGGTTCATTATTTGGAGATGAATCACCTGTAAAAATTCCGAAATCGCATAATCTTGAAGCTGCTGTTGATGTAGCTGCTTTGTTACATCGTACCAATTCTTTACAAACGGAAATGTGGAATTTATATGAAAATGAAATTTGGGGTGATAATTCACCTTCTGTCAACATCAAGTATCCACTTCGATCTGAAGCGTTACCTAATTACCCTGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9010#0 TCGACGTACATTTTTGCTTGCTGTTCTTTTCGACATTATTTTAAGTTTCATTCTGTGGAT 60
consensus_9010#1 ------------------------------------------------------------
consensus_9010#0 TATATATGCTAAACAAACGTATCCTGGCAATGTTGGTCATGCAATGTTGGAAGAAATAAG 120
consensus_9010#1 ------------------------------------------------------------
consensus_9010#0 CAATTATTCTTTCTCTAAATCACTTTTTGATACAGTTATGTTATCAGCTTTCCGGTTTGT 180
consensus_9010#1 ------------------------------------------------------------
consensus_9010#0 TCTTATGGAAATTACTTATGGCGTAGTTCAAAGTCGCACTCCGTGGTGGTCCGCTATTTC 240
consensus_9010#1 ------------------------------------------------------------
consensus_9010#0 AACTGGTTTAACAAGTTTAATTCTGGTTGTTAAGTGTTTCATTTTTGATTTTCATCAAAG 300
consensus_9010#1 ------------------------------------------------------------
consensus_9010#0 GACTCCAGATAATCAGGGTCTAGCATATGCTGTTTTAATCACATCATTAATCATTTCATG 360
consensus_9010#1 ---------------------GGTCGACTCTAGAGTGATCCCCTCATAGGT----TCGCA 35
* * ** * *** * **** * **
consensus_9010#0 GATTGAAACCACCTTCCTAATTTATCGTGTCATTCCTCAAGAAAAAGCTGCCAATCGTGT 420
consensus_9010#1 GG--GAAACCACCTTCCTAATTTATCGTGTCATTCCTCAAGAAAAAGCTGCCAATCGTGT 93
* ********************************************************
consensus_9010#0 AACAATGTGTTTAAAAGAGCAGGATGAAACTCGAAGTTTGTTAAGTTCACGACTTGAAAA 480
consensus_9010#1 AACAATGTGTTTAAAAGAGCAGGATGAAACTCGAAGTTTGTTAAGTTCACGACTTGAAAA 153
************************************************************
consensus_9010#0 TCGTGTTCCTTGGTATTCTGGTCTTTCTGTACGGTCTATGAGCAATGCAGATTTTTATAC 540
consensus_9010#1 TCGTGTTCCTTGGTATTCTGGTCTTTCTGTACGGGCTATGAGCAATGCAGATTTTTATAC 213
********************************** *************************
consensus_9010#0 ACCACAAGGTTCATTATTTGGAGATGAATCACCTGTAAAAATTCCGAAATCGCATAATCT 600
consensus_9010#1 ACCACAAGGTTCATTATTTGGAGATGAATCACCTGTAAAAATTCCGAAATCGCATAATCT 273
************************************************************
consensus_9010#0 TGAAGCTGCTGTTGATGTAGCTGCTTTGTTACATCGTACCAATTCTTTACAAACGGAAAT 660
consensus_9010#1 TGAAGCTGCTGTTGATGTAGCTGCTTTGTTACATCGTACCAATTCTTTACAAACGGAAAT 333
************************************************************
consensus_9010#0 GTGGAATTTATATGAAAATGAAATTTGGGGTGATAATTCACCTTCTGTCAACATCAAGTA 720
consensus_9010#1 GTGGAATTTATATGAAAATGAAATTTGGGGTGATAATTCACCTTCTGTCAACATCAAGTA 393
************************************************************
consensus_9010#0 TCCACTTCGATCTGAAGCGTTACCTAATTATCCTGCTAAGGTTTATCGTCTAGAGGGTTT 780
consensus_9010#1 TCCACTTCGATCTGAAGCGTTACCTAATTACCCTGC------------------------ 429
****************************** *****
consensus_9010#0 ATTATCGGTTTCACCGTTCCATCTATTTAATGATATGGTTATAAATGTCCATGAAACGCC 840
consensus_9010#1 ------------------------------------------------------------
consensus_9010#0 TAGCTGGAATACTACTCTGGCATCTGTTGAGTGTATCCAAGCTTTGGCTTCAGAGAATAT 900
consensus_9010#1 ------------------------------------------------------------
consensus_9010#0 TGACATCATACACAATATGGCTAAAGAGGCTGTCGGAGGTTTAATATCTGCCAGAGATTT 960
consensus_9010#1 ------------------------------------------------------------
consensus_9010#0 TGTTCTGTTGAGATCATGGGGAATACATAACAATAATTGTTACTTTATATGTTGTACTTA 1020
consensus_9010#1 ------------------------------------------------------------
consensus_9010#0 TGTTGAACATCCTAAATGTCCACCAATACCAAATTATGTACGTGCTGAACAAGTAATTAG 1080
consensus_9010#1 ------------------------------------------------------------
consensus_9010#0 TGCGTGTATATTTCGACCAATTCCTGATTGTCCAAATCAATGCAATTTAGTATGGTTCTT 1140
consensus_9010#1 ------------------------------------------------------------
consensus_9010#0 ATGCAATGATTTAA 1154
consensus_9010#1 --------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||