cluster # 9014

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Schistosoma mansoni
cluster # 9014 cluster # 9014 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9014#0 length = 507 sequences # 1

consensus_9014#1 length = 467 sequences # 7

consensusID : consensus_9014#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 507
fasta sequence

                              [GCATCTGGAATTTCGGGATGTACGAATGGACGACAGTCTTCAAAGTCACAAAGTGAACAACAACCACGTTGTCTGTTTGGTCTAGTGGTTGTACAAGACCTTACTTTAATGCCACATATTCTTAGAGCTAATGACGTCCAAGTTGAGAAATTGTTGGCGGCTGACTTGTCTTCAGTTGAAAGTCTTAAAGTTGCTTGCGAACTGGCGGACGGACGGCGCAATTTACTTCACATGGCTGTGTCGATGTGTGCACCACAATCTAACAAAGAAACAAGTCCTGAATGGCTGTCAAAACTTGAACCTGTCCTTACTAGCCCTATATTTCGTCCTACTTTTGAGGATAAGACCAAACCAATTAAGGAGGCCAATGAATCTTCTGATGCTTCTGTGATGAAAGTAGTTAATCCAAATACTTCCAGCCAGCCATGAAATCTGGACTAATTTGATGTCACTTGATCTTCCTCCTGTCCAATGTGCGTCTTTTGCTTGGATTCGAAATAATTAACC]

[+] EMBL CD060931             [GCATCTGGAATTTCGGGATGTACGAATGGACGACAGTCTTCAAAGTCACAAAGTGAACAACAACCACGTTGTCTGTTTGGTCTAGTGGTTGTACAAGACCTTACTTTAATGCCACATATTCTTAGAGCTAATGACGTCCAAGTTGAGAAATTGTTGGCGGCTGACTTGTCTTCAGTTGAAAGTCTTAAAGTTGCTTGCGAACTGGCGGACGGACGGCGCAATTTACTTCACATGGCTGTGTCGATGTGTGCACCACAATCTAACAAAGAAACAAGTCCTGAATGGCTGTCAAAACTTGAACCTGTCCTTACTAGCCCTATATTTCGTCCTACTTTTGAGGATAAGACCAAACCAATTAAGGAGGCCAATGAATCTTCTGATGCTTCTGTGATGAAAGTAGTTAATCCAAATACTTCCAGCCAGCCATGAAATCTGGACTAATTTGATGTCACTTGATCTTCCTCCTGTCCAATGTGCGTCTTTTGCTTGGATTCGAAATAATTAACC]




>consensus_9014#0
GCATCTGGAATTTCGGGATGTACGAATGGACGACAGTCTTCAAAGTCACAAAGTGAACAA
CAACCACGTTGTCTGTTTGGTCTAGTGGTTGTACAAGACCTTACTTTAATGCCACATATT
CTTAGAGCTAATGACGTCCAAGTTGAGAAATTGTTGGCGGCTGACTTGTCTTCAGTTGAA
AGTCTTAAAGTTGCTTGCGAACTGGCGGACGGACGGCGCAATTTACTTCACATGGCTGTG
TCGATGTGTGCACCACAATCTAACAAAGAAACAAGTCCTGAATGGCTGTCAAAACTTGAA
CCTGTCCTTACTAGCCCTATATTTCGTCCTACTTTTGAGGATAAGACCAAACCAATTAAG
GAGGCCAATGAATCTTCTGATGCTTCTGTGATGAAAGTAGTTAATCCAAATACTTCCAGC
CAGCCATGAAATCTGGACTAATTTGATGTCACTTGATCTTCCTCCTGTCCAATGTGCGTC
TTTTGCTTGGATTCGAAATAATTAACC

consensusID : consensus_9014#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 467
fasta sequence

                              [GCTCGAATGATCGACAGTCTTCAAAGTCACAAAGTGAACAACAACCACGTTGTCTGTTTGGTCTAGTGGTTGTACAAGACCTTACTTT-AATGCCACATATTCTTAGAGCTAATGACGTCCAAGTTGAG-AAATTGTTGGCTGCTGACTTGTCTTCAGTTGAAAGTCTTAAAGTTGCTTGCG-AACTGGCGGACGGACGGCGCAATTTACTTCAC-ATGGCTGTGTCGATGTGTGCACCACAATCTAACAAAGAAACAAGTCCTGAATGGCTGTCAAAACTTGAACCTGTCCTTACTAGCCCTATATTTCGTCCTACTTTTGAGGATAAGACCAAACCAATTAAGGAGGCCAATGAATCTTCTGATGCTTCTGTGATG-AAAGTAGTTAATCCAAATACTT-CCA-G-CGTCAACCCT-CATTTTGGTCATCCGTAGCTCGCTCTTCTG-CCGCCTCTGGTTGCTTAAGCATGCATG]

[+] EMBL CD158191             [GCTCGAATGATCGACAGTCTTCAAAGTCACAAAGTGAACAACAACCACGTTGCCTGTTTGGTCTAGGGGTTGTACAAGACCTTACTTT AATGCCACATATTCTTAGAGCTAATGACGTCCAAGTTGAG AAATTGTTGGCTGCTGACTTGTCTTCAGTTGAAAGTCTTAAAGTTGCTTGCG AACTGGCGGACGGACGGCGCAATTTACTTCAC ATGGCTGTGTCGATGTGTGCACCACAATCTAACAAAGAAACAAGTCCTGAATGGCTGTCAAAACTTGAACCTGTCCTTACTAGCCCTATATTTCGTCCTACTTTTGAGGATAAGACCAAACCAATTAAGGAGGCCAATGAATCTTCTGATGCTTCTGTGATG AAAGTAGTTAATCCAAATACTT CCAGG CGTCAACCCT CATTTTGGTCATCCGTAGCTCGCTCTTCTG CCGCCTCTGGTTGCTTAAGCATGCATG]
[+] EMBL CD158012             [                       AAGTCACAAAGTGAACAACAACCACGTTGTCTGTTTGGTCTAGTGGTTGTACAAGACCTTACTTT AATGCCACATATTCTTAGAGCTAATGACGTCCAAGTTGAG AAATTGTTGGCTGCTGACTTGTCTTCAGTTGAAAGTCTTAAAGTTGCTTGCGAAACTGGCGGACGGACGGCGCAATTTACTTCACAATGGCTGTGTCGATGTGTGCACCACAATCTAACAAAGAAACAAGTCCTGAATGGCTGACAAAACTTGAACCTGTCCTTACTAAGCCTATATGTCGTACTACTTTTGAGGATAAGACCAGACCAATTAAGGAGGCCAATGAATCTTCTGATGCTTCTGTGATGAAAAGTAG TAATNCAAATACTT GCA GCCGTCAACCCT NATTTTGGTCATNCGTAGCTCGCTCTTGGGCCCGCCTCTTGGTGCTTAAGCATGCAT ]
[+] EMBL CD158009             [                       AAGTCACAAAGTGAACAACAACCACGTTGTCTGTTTGGTCTAGTGGTTGTACAAGACCTTACTTT AATGCCACATATTCTTAGAGCTAATGACGTCCAAGTTGAG AAATTGTTGGCTGCTGACTTGTCTTCAGTTGAAAGTCTTAAAGTTGCTTGCGAAACTGGCGGACGGACGGCGCAATTTACTTCAC ATGGCTGTGTCGATGTGTGCACCACAATCTAACAAAGATACAAGTCCTGAATGGCTGTCAAAACTTGAACCTGTCCTTACTAGCCCTATATTTCGTCCTACTTTTGAGGATAAGAACAAACCAATTAAGGA GCCAATGAATCTTCTGATGCTTCTGTGATG AAAGTAGNTAATTCAAATACTTNNCA G CGTCAACCCTNNATTTTGGTCATTCGTAGCTCGCTCTCCTG CCGCTTTTGGTTGCTTAAGCATGCATG]
[+] EMBL CD158240             [                       AAGTCACAAAGTGAACAACAACCACGTTGTCTGTTTGGTCTAGTGGTTGTACAAGACCTTACTTT AATGCCACATATTCTTAGAGCTAATGACGTCCAAGTTGAG AAATTGTTGGCTGCTGACTTGTCTTCAGTTGAAAGTCTTAAAGTTGCTTGCG AACTGGCGGACGGACGGCGCAATTTACTTCAC ATGGCTGTGTCGATGTGTGCACCACAATCTAACAAAGAAACAAGTCCTGAATGGCTGTCAAAACTTGAACCTGTCCTTACTAGCCCTATATTTCGTCCTACTTTTGAGGATAAGACCAAACCAATTAAGGAGGCCAATGAATCTTCTGATGCTTCTGTGATG AAAGTAGTTAATCCAAATACTTNCCA G CGTCACCCNT CATTNTGGTCATCCGTAGCTCGCTCTTCTG CCCGCTCTGGNTGCTTNAGCATGCATG]
[+] EMBL CD157934             [                       AAGTCACATAGTGAACAACAACCACGTTGTCTGTTTGGTCTAGTGGTTGTACAGAACCTTACTTTAAATGCCACATATTCTTAGAGCTAATGACGTCCAAGTTGAGAAAATTGTTGGCTGCTGACTTGTCTTCAGTTGAAAGTCTTAAAGTTGCTTGCGAAACTGGCGGACGGACGGCGCAATTAACTTAACAATGGCTGTGTCGATGTGTGCACCAac                                                                                                                                                                                                                                           ]
[+] EMBL CD158013             [                       AAGTCACAAAGTGAACAACAACCACGTTGTCTGTTTGGTCTAGTGGTTGTACAAGACCTTACTTT AATGCCACATATTCTTAGAGCTAATGACGTCCAAGTTGAG AAATTGTTGGCTGCTGACTTGTCTTCAGTTGAAAGTCTTAAAGTTGCTTGCG AACTGG                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD157999             [                       AAGTCACAAGGTGAACAACAACCACGTTGTCTGTTTGGTCTAGTGGTTGAACAAGACCTTACTTT AATGCCACATATTCTTAGAGCTAATGACGTCCAAGTTGAG A                                                                                                                                                                                                                                                                                                                                                          ]




>consensus_9014#1
GCTCGAATGATCGACAGTCTTCAAAGTCACAAAGTGAACAACAACCACGTTGTCTGTTTG
GTCTAGTGGTTGTACAAGACCTTACTTTAATGCCACATATTCTTAGAGCTAATGACGTCC
AAGTTGAGAAATTGTTGGCTGCTGACTTGTCTTCAGTTGAAAGTCTTAAAGTTGCTTGCG
AACTGGCGGACGGACGGCGCAATTTACTTCACATGGCTGTGTCGATGTGTGCACCACAAT
CTAACAAAGAAACAAGTCCTGAATGGCTGTCAAAACTTGAACCTGTCCTTACTAGCCCTA
TATTTCGTCCTACTTTTGAGGATAAGACCAAACCAATTAAGGAGGCCAATGAATCTTCTG
ATGCTTCTGTGATGAAAGTAGTTAATCCAAATACTTCCAGCGTCAACCCTCATTTTGGTC
ATCCGTAGCTCGCTCTTCTGCCGCCTCTGGTTGCTTAAGCATGCATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9014#0      GCATCTGGAATTTCGGGATGTACGAATGGACGACAGTCTTCAAAGTCACAAAGTGAACAA 60
consensus_9014#1      -------------------GCTCGAATGATCGACAGTCTTCAAAGTCACAAAGTGAACAA 41
                                         *  ******  ******************************

consensus_9014#0      CAACCACGTTGTCTGTTTGGTCTAGTGGTTGTACAAGACCTTACTTTAATGCCACATATT 120
consensus_9014#1      CAACCACGTTGTCTGTTTGGTCTAGTGGTTGTACAAGACCTTACTTTAATGCCACATATT 101
                      ************************************************************

consensus_9014#0      CTTAGAGCTAATGACGTCCAAGTTGAGAAATTGTTGGCGGCTGACTTGTCTTCAGTTGAA 180
consensus_9014#1      CTTAGAGCTAATGACGTCCAAGTTGAGAAATTGTTGGCTGCTGACTTGTCTTCAGTTGAA 161
                      ************************************** *********************

consensus_9014#0      AGTCTTAAAGTTGCTTGCGAACTGGCGGACGGACGGCGCAATTTACTTCACATGGCTGTG 240
consensus_9014#1      AGTCTTAAAGTTGCTTGCGAACTGGCGGACGGACGGCGCAATTTACTTCACATGGCTGTG 221
                      ************************************************************

consensus_9014#0      TCGATGTGTGCACCACAATCTAACAAAGAAACAAGTCCTGAATGGCTGTCAAAACTTGAA 300
consensus_9014#1      TCGATGTGTGCACCACAATCTAACAAAGAAACAAGTCCTGAATGGCTGTCAAAACTTGAA 281
                      ************************************************************

consensus_9014#0      CCTGTCCTTACTAGCCCTATATTTCGTCCTACTTTTGAGGATAAGACCAAACCAATTAAG 360
consensus_9014#1      CCTGTCCTTACTAGCCCTATATTTCGTCCTACTTTTGAGGATAAGACCAAACCAATTAAG 341
                      ************************************************************

consensus_9014#0      GAGGCCAATGAATCTTCTGATGCTTCTGTGATGAAAGTAGTTAATCCAAATACTTCCAGC 420
consensus_9014#1      GAGGCCAATGAATCTTCTGATGCTTCTGTGATGAAAGTAGTTAATCCAAATACTTCCAGC 401
                      ************************************************************

consensus_9014#0      CAGCCATGAAATCTGGACTAATTTGATGTCACTTGATCTTCCTCCTGTCCAATGTGCGTC 480
consensus_9014#1      --GTCA--ACCCTCATTTTGGTCATCCGTAGCTCGCTCTTCTGCCGCCTCTGGTTG---C 454
                        * **  *         *  *     **  ** * *****  **    *    **   *

consensus_9014#0      TTTTGCTTGGATTCGAAATAATTAACC 507
consensus_9014#1      TTAAGCATGCATG-------------- 467
                      **  ** ** **