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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9019#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1177 fasta sequence
[NNAAGTGAATCAACTTTAAACTGTCAACNACAGTCTGTGTGTAAACATGAGGAACTTAAAGACAGGGAGAAAGGTATTGGTGGACCATGTGAATCAACAAGAGCTGGTTCAAGCTCATTCACTCCCGACTCCGGCATTATCTCATCACTCCAAACGTCATGTGCACCAACAAACACTACACAAGGACACTCATTTATCAGACGGACATTACACAAACCAGCATACTGTCATCATTGTGGTGAAGTTATATGGGGCATTTTAAGTAGTGGTTTTCAATGTGAAATTTGCAACTTACTTGCACATGAACGTTGTCAAACCGTCGTGAGTTCTCCATGTACATCCGTCGCACCTCTTCAAATAAAGTCTCCAGTATCTCATTGTTGGTCTGATGTGGGTCGGTTCAAACGGAAATTTTGCAATGTTTGTCGCAAGCGCTTGGAAGATAGCCTTTCTGTAAGATGTGAAGTGTTCACCGCGTCAAACTCATCACTGGAGGGAGGGGAATTTACCAACCAATTCCAAGTGTTTCATATGTCGTAAGACATGCTGGTCATCTGAATGTCTTACAGGTTATCGTTGTCAATGGTGCGGTAGAACTAGTCATGCAGGATGTATAGAGAAAGTGGAAGATGAATGTGACTTCGGTCCCTTACGAGATATCATGTTACCGTCATTCTGTGTTAGTCTTCCACGAATGAATATTCCTATTGAACATGTGATCGGTGTAACTAAACGTCCACGAGGTCGAGCTATTTCAGCTGATTGGTCAAGCAGTGGGGAAAGCAAAGAGGATAGTTGGCAAGATACACGATCTCCAAGAGAAACTATAGACCGTGCTAGTAGTGATGAATATGTATATGTATTCGATGGCGTTGGAGCTTTAAAAAGACGTTCATGTCGAAGTTTCAGTTTTTCCAAATCCATGTCTACATATTCGGCAGTTAAACGGTTTTTGAAAACATTTCATTTAGCTGGTACGCCTGATTATTACAATGTGTATGAAGTTAATGAACATGATGGAACTGAAAACAAACTTAATTATCATGTAAATCTTCGTAATCAATTGAGATTTGATTTAAAACAACCTTCCATATTGATTCGATCTAAAGAACCGGAGGAATCAACGATTACCATTAAAGTGTACGCTGGGGATTTACGTTTACTACTTGCTCCTTAT]
[-] EMBL CD189018 [NNAAGTGAATCAACTTTAAACTGTCAACNACAGTCTGTGTGTAAACATGAGGAACTTAAAGACAGGGAGAAAGGTATTGGTGGACCATGTGAATCAACAAGAGCTGGTTCAAGCTCATTCACTCCCGACTCCGGCATTATCTCATCACTCCAAACGTCATGTGCACCAACAAACACTACACAAGGACACTCAT ]
[+] EMBL CD146749 [ AAAGACAGGGAGAAAGGTATTGGTGGACCATGTGAATCAACAAGAGCTGGTTCAAGCTCATTCACTCCCGACTCCGGCATTATCTCATCACTCCAAACGTCATGTGCACCAACAAACACTACACAAGGACACTCATTTATCAGACGGACATTACACAAACCAGCATACTGTCATCATTGTGGTGAAGTTATATGGGGCATTTTAAGTAGTGGTTTTCA ]
[-] EMBL CD168887 [ ATCAGACGGACATTACACAAACCAGCATACTGTCATCATTGTGGTGAAGTTATATGGGGCATTTTAAGTAGTGGTTTTCAATGTGAAATTTGCAACTTACTTGCACATGAACGTTGTCAAACCGTCGTGAGTTCTCCATGTACATCCGTCGCACCTCTTCAAATAAAGTCTCCAGTATCTCATTGTTGGTCTGATGTGGGTCGGTTCAAACGGAAATTTTGCAATGTTTGTCGCAAGCGCTTGGAAGATAGCCTTTCTGTAAGATGTGAAGTGTTCACCGCGTCAAACTCATCACTGGAGGGAGGGGAATTTAC ]
[+] EMBL CD111530 [ CATCCGTCGCACCTCTTCAAATAAAGTCTCCAGTATCTCATTGTTGGTCTGATGTGGGTCGGTTCAAACGGAAATTTTGCAATGTTTGTCGCAAGCGCTTGGAAGATAGCCTTTCTGTAAGATGTGAAGTGTTCACCGCGTCAAACTCATCACTGGAGGGAGGGGAATTTACCAACCAATTCCAAGTGTTTCATATGTCGTAAGACATGCTGGTCATCTGAATGTCTTACAGGTTATCGTTGTCAATGGTGCGGTAGAACTAGTCATGCAGGATGTATAGAGAAAGTGGAAGATGAATGTGACTTCGGTCCCTTACGAGATATCATGTTACCGTCATTCTGTGTTAGTCTTCCACG ]
[+] EMBL CD178399 [ CAACCAATTCCAAGTGTTTCATATGTCGTAAGACATGCTGGTCATCTGAATGTCTTACAGGTTATCGTTGTCAATGGTGCGGTAGAACTAGTCATGCAGGATGTATAGAGAAAGTGGAAGGTGAATGTGACTTCGGTCCCTTACGAGATATCATGTTACCGTCATTCTGTGTTAGTCTTCCACGAATGAATATTCCTATTGAACATGTGATCGGTGTAACTAAACGTCCACGAGGTCGAGCTATTTCAGCTGATTGGTCAAGCAGTGGGGAAAGCAAAGAGGATAGTTGGCAAGATACACGATCTCCAAGAGAAACTATAGACCGTGCTAGTAGTGATGAATATGTATATGTATTCGATGGCGTTGGAGCTTTAAAAAGACGTTCATGTCGAAGTTTCAGTTTTTCCAAATCCATGTCTACATATTCGGCAGTTAAACGGTTTTTGAAAACATTTCATTTAGCTGGTACGCCTGATTATTACAATGTGTATGAAGTTAATGAACATGATGGAACTGAAAACAAACTTAATTATCATGTAAATCTTCGTAATCAATTGAGATTTGA ]
[+] EMBL CD062289 [ ATGTTACCGTCATTCTGTGTTAGTCTTCCACGAATGAATATTCCTATTGAACATGTGATCGGTGTAACTAAACGTCCACGAGGTCGAGCTATTTCAGCTGATTGGTCAAGCAGTGGGGAAAGCAAAGAGGATAGTTGGCAAGATACACGATCTCCAAGAGAAACTATAGACCGTGCTAGTAGTGATGAATATGTATATGTATTCGATGGCGTTGGAGCTTTAAAAAGACGTTCATGTCGAAGTTTCAGTTTTTCCAAATCCATGTCTACATATTCGGCAGTTAAACGGTTTTTGAAAACATTTCATTTAGCTGGTACGCCTGATTATTACAATGTGTATGAAGTTAATGAACATGATGGAACTGAAAACAAACTTAATTATCATGTAAATCTTCGTAATCAATTGAGATTTGATTTAAAACAACCTTCCATAT ]
[-] EMBL CD170019 [ CTTTAAAAAGACGTTCATGTCGAAGTTTCAGTTTTTCCAAATCCATGTCTACATATTCGGCAGTTAAACGGTTTTTGAAAACATTTCATTTAGCTGGTACGCCTGATTATTACAATGTGTATGAAGTTAATGAACATGATGGAACTGAAAACAAACTTAATTATCATGTAAATCTTCGTAATCAATTGAGATTTGATTTAAAACAACCTTCCATATTGATTCGATCTAAAGAACCGGAGGAATCAACGATTACCATTAAAGTGTACGCTGGGGATTTACGTTTACTACTTGCTCCTTAT]
consensusID : consensus_9019#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 319 fasta sequence
[AGGACACTCATTTATCAGACGGACATTACACAAACCAGCATACTGTCATCATTGTGGTGAAGTTATATGGGGCATTTTAAGTAGTGGTTTTCAATGTGAAAGTAAGTAACTTGGTCCTTGAGATTAATATACTATACAAAATCACTGGACCCCTGCCACTCTGCATTTTTAGTAGGCTATACCGCGATACAAACTGTAATTAGGAAGTTGAAGGGTGGGACTATCATTTATGAATAACCTTTAAGCGACGCTAGGCTGACTTTGAAGACGTCCACTTAATAACTAGGACCAAATGAGGGTTATAAACTTGTGTGTGGGA]
[-] EMBL CD196074 [AGGACACTCATTTATCAGACGGACATTACACAAACCAGCATACTGTCATCATTGTGGTGAAGTTATATGGGGCATTTTAAGTAGTGGTTTTCAATGTGAAAGTAAGTAACTTGGTCCTTGAGATTAATATACTATACAAAATCACTGGACCCCTGCCACTCTGCATTTTTAGTAGGCTATACCGCGATACAAACTGTAATTAGGAAGTTGAAGGGTGGGACTATCATTTATGAATAACCTTTAAGCGACGCTAGGCTGACTTTGAAGACGTCCACTTAATAACTAGGACCAAATGAGGGTTATAAACTTGTGTGTGGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9019#0 NNAAGTGAATCAACTTTAAACTGTCAACNACAGTCTGTGTGTAAACATGAGGAACTTAAA 60
consensus_9019#1 ------------------------------------------------------------
consensus_9019#0 GACAGGGAGAAAGGTATTGGTGGACCATGTGAATCAACAAGAGCTGGTTCAAGCTCATTC 120
consensus_9019#1 ------------------------------------------------------------
consensus_9019#0 ACTCCCGACTCCGGCATTATCTCATCACTCCAAACGTCATGTGCACCAACAAACACTACA 180
consensus_9019#1 ------------------------------------------------------------
consensus_9019#0 CAAGGACACTCATTTATCAGACGGACATTACACAAACCAGCATACTGTCATCATTGTGGT 240
consensus_9019#1 --AGGACACTCATTTATCAGACGGACATTACACAAACCAGCATACTGTCATCATTGTGGT 58
**********************************************************
consensus_9019#0 GAAGTTATATGGGGCATTTTAAGTAGTGGTTTTCAATGTGAAATTTGCAACTTACTTGCA 300
consensus_9019#1 GAAGTTATATGGGGCATTTTAAGTAGTGGTTTTCAATGTGAAA---GTAAGTAACTTGGT 115
******************************************* * ** * *****
consensus_9019#0 CATGAACGTTGTCAAACCGTCGTGAGTTCTCCATGTACATCCGTCGCACCTCTTCAAATA 360
consensus_9019#1 CCTTGAGATTAATATACTAT-ACAAAATCAC--TGGACCCCTGCCAC---TCTGCATTTT 169
* * * ** * ** * * ** * ** ** * * * * *** ** *
consensus_9019#0 AAGTCTCCAGTATCTCATTGTTGGTCTGATGTGGGTCGGTTCAAACGGAAATTTTGCAAT 420
consensus_9019#1 TAGTAGGCTATACCGCGATAC-AAACTGTAATTAGGAAGTTGAAGGGTGGGACT---ATC 225
*** * ** * * * *** * * *** ** * * *
consensus_9019#0 GTTTGTCGCAAGCGCTTGGAAGATAGCCTTTCTGTAAGATGTGAAGTGTTCACCGCGTCA 480
consensus_9019#1 ATTTATGAATAACCTTTAAGCGAC-GCTAGGCTG--ACTTTGAAGACGTCCACTTAATAA 282
*** * * * ** ** ** *** * * * ** *** * *
consensus_9019#0 AACTCATCACTGGAGGGAGGGGAATTTACCAACCAATTCCAAGTGTTTCATATGTCGTAA 540
consensus_9019#1 CTAGGACCAAATGAGGGTTATAAACTTGTGTGTGGGA----------------------- 319
* ** ***** ** **
consensus_9019#0 GACATGCTGGTCATCTGAATGTCTTACAGGTTATCGTTGTCAATGGTGCGGTAGAACTAG 600
consensus_9019#1 ------------------------------------------------------------
consensus_9019#0 TCATGCAGGATGTATAGAGAAAGTGGAAGATGAATGTGACTTCGGTCCCTTACGAGATAT 660
consensus_9019#1 ------------------------------------------------------------
consensus_9019#0 CATGTTACCGTCATTCTGTGTTAGTCTTCCACGAATGAATATTCCTATTGAACATGTGAT 720
consensus_9019#1 ------------------------------------------------------------
consensus_9019#0 CGGTGTAACTAAACGTCCACGAGGTCGAGCTATTTCAGCTGATTGGTCAAGCAGTGGGGA 780
consensus_9019#1 ------------------------------------------------------------
consensus_9019#0 AAGCAAAGAGGATAGTTGGCAAGATACACGATCTCCAAGAGAAACTATAGACCGTGCTAG 840
consensus_9019#1 ------------------------------------------------------------
consensus_9019#0 TAGTGATGAATATGTATATGTATTCGATGGCGTTGGAGCTTTAAAAAGACGTTCATGTCG 900
consensus_9019#1 ------------------------------------------------------------
consensus_9019#0 AAGTTTCAGTTTTTCCAAATCCATGTCTACATATTCGGCAGTTAAACGGTTTTTGAAAAC 960
consensus_9019#1 ------------------------------------------------------------
consensus_9019#0 ATTTCATTTAGCTGGTACGCCTGATTATTACAATGTGTATGAAGTTAATGAACATGATGG 1020
consensus_9019#1 ------------------------------------------------------------
consensus_9019#0 AACTGAAAACAAACTTAATTATCATGTAAATCTTCGTAATCAATTGAGATTTGATTTAAA 1080
consensus_9019#1 ------------------------------------------------------------
consensus_9019#0 ACAACCTTCCATATTGATTCGATCTAAAGAACCGGAGGAATCAACGATTACCATTAAAGT 1140
consensus_9019#1 ------------------------------------------------------------
consensus_9019#0 GTACGCTGGGGATTTACGTTTACTACTTGCTCCTTAT 1177
consensus_9019#1 -------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||