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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9020#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1012 fasta sequence
[ATTTGATCCCTGGAATCCTTTGGTTTTGTACGTTACAGAACTTTATGTAAATAGCTTTTTAAACCTGGATTTCACAAATCATGTTAACTGAAAAAAAGTCGGGAACCAACTTTACCTGGTTCACAGTCGTCTGAACATCAGACAGATTATGGTCCCAGCACGACCGAAACAACTGATCGATCTGCAAACAATCCTGGGCCTTATCTAGATGGCACCGTACGTAAAGCTGATGGAATGAGCGATAGTGATTTTGACGAACGAGATGTTTCGGTGGAAGATGATGACAGTATTCCTCCGGAGGAAGATGCTGCTGATGAGGAAAAAGTATCAAGTCTAGTGAAAGAAAGTCAAATGTCATTAGATGAACTTCTAGCTATATACGGAATTCCTGCAAACTCTTACGGACACAATAGCGACACTGCTGCAGGAAACTGCAGCAACGTTTCCAGAGGTAAATCTGGGCGCTTAAAAAGCATTCGACACACTGTTACTCCAAGTTTAGCTTCATCACAGGAGTTATTGTTATCATTACCTCCAGCTAAGAAGTTTCGTTGTGCTGCTCACGCATCTGTTTGCTTAAATATTGGAAGTAATGATATTTCTACTGGAGGAACTAGACCAGTATTATCAGCTGATTACCCAACCTTTCGTTCATCGTCAGATGTCGATGCGTTGGTAGATAAAAACAAAGCCGATACACCTCCATTACGTTGTCTCACTGTGTTTTCACACCCACACTCAGTCCCTTGTTCGCAAAGCACTAGTCCAGTATCTATAGATGTATCATGTCCCGATCCACCTTCAGCCACCGCAACTCCTAAATATTCAAAACAACATGCCTCAGAAGACTCAACTACTAGTCGCAAAAGCTCATCGCGTAGTCATCTACTTAGGTCCCGCTCAAAATCTAACCTAGCTATTCATACTTCTGAATTATAGGACAGTGCAACTCCTAATGAAGAGAATCGATTGGAGGAAGAGGACAGTATAAATACTGGCAATCGAATTACAA]
[+] EMBL CD062290 [ATTTGATCCCTGGAATCCTTTGGTTTTGTACGTTACAGAACTTTATGTAAATAGCTTTTTAAACCTGGATTTCACAAATCATGTTAACTGAAAAAAAGTCGGGAACCAACTTTACCTGGTTCACAGTCGTCTGAACATCAGACAGATTATGGTCCCAGCACGACCGAAACAACTGATCGATCTGCAAACAATCCTGGGCCTTATCTAGATGGCACCGTACGTAAAGCTGATGGAATGAGCGATAGTGATTTTGACGAACGAGATGTTTCGGTGGAAGATGATGACAGTATTCCTCCGGAGGAAGATGCTGCTGATGAGGAAAAAGTATCAAGTCTAGTGAAAGAAAGTCAAATGTCATTAGATGAACTTCTAGCTATATACGGAATTCCTGCAAACTCTTAAGGACgggt ]
[+] EMBL CD198612 [ GATTTTGACGAACGAGATGTTTCGGTGGAAGATGATGACAGTATTCCTCCGGAGGAAGATGCTGCTGATGAGGAAGAAGTATCAAGTCTAGTGAAAGAAAGTCAAATGTCATTAGATGAACTTCTAGCTATATACGGAATTCCTGCAAACTCTTACGGACACAATAGCGACACTGCTGCAGGAAACTGCAGCAACGTTTCCAGAGGTAAATCTGGGCGCTTAAAAAGCATTCGACACACTGTTACTCCGAGTTTAGCTTCATCACAGGAGTTATTGTTATCATTACCTCCAGCTAAGAAGTTTCGTTGTGCTGCTCACGCATCTGTTTGCTTAAATATTGGAAGTAATGATATTTCTACTGGAGGAACTAGACCAGTATTATCAGCTGATTACCCAACCTTTCGTTCATCGTCAG ]
[-] EMBL CD063060 [ CAAGTCTAGTGAAAGAAAGTCAAATGTCATTAGATGAACTTCTAGCTATATACGGAATTCCTGCAAACTCTTACGGACACAATAGCGACACTGCTGCAGGAAACTGCAGCAACGTTTCCAGAGGTAAATCTGGGCGCTTAAAAAGCATTCGACACACTGTTACTCCAAGTTTAGCTTCATCACAGGAGTTATTGTTATCATTACCTCCAGCTAAGAAGTTTCGTTGTGCTGCTCACGCATCTGTTTGCTTAAATATTGGAAGTAATGATATTTCTACTGGAGGAACTAGACCAGTATTATCAGCTGATTACCCAACatga ]
[+] EMBL CD125145 [ CCAAGTTTAGCTTCATCACAGGAGTTATTGTTATCATTACCTCCAGCTAAGAAGTTTCGTTGTGCTGCTCACGCATCTGTTTGCTTAAATATTGGAAGTAATGATATTTCTACTGGAGGAACTAGACCAGTATTATCAGCTGATTACCCAACCTTTCGTTCATCGTCAGATGTCGATGCGTTGGTAGATAAAAACAAAGCCGATACACCTCCATTACGTTGTCTCACTGTGTTTTCACACCCACACTCAGTCCCTTGTTCGCAAAGCACTAGTCCAGTATCTATAGATGTATCATGTCCCGATCCACCTTCAGCCACCGCAACTCCTAAATATTCAAAACAACATGCCTCAGAAGACTCAACTACTAGTCGCAAAAGCTCATCGCGTAGTCATCTACTTAGGTCCCGCTCAAAATCTAACCTAGCTATTCATACTTCTGAA ]
[-] EMBL CD161973 [ TGTTCGCAAAGAACTAGTTCAGTATCTATAGATGTATCATGTCCCGATCCACCTTCAGCCACCGCAACTCTTAAATATTCAAAACAACATGCCTCAGAAGACTCAACTACTAGTCGCAAAAGCTCATCGCGTAGTCATCTACTTAGGTCCCGCTCAAAATCTAACCTAGCTATTCATACTTCTGAATTATAGGACAGTGCAACTCCTAATGAAGAGAATCGATTG ]
[-] EMBL CD161972 [ CTAAATATTCTAAACAACATGCCTCAGAAGACTCAACTACTAGTCGCAAAAGCTCATCGCGTAGTCATCTACTTAGGTCCCGCTCAAAATCTAACCTAGCTATTCATACTTGTGAATTATAGGACAGTGCAACTCCTAATGAAGAGAATCGATTGGAGGAAGAGGACAGTATAAATACTGGCAATCGAATTACAA]
consensusID : consensus_9020#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 433 fasta sequence
[ACTCTTACGTACACCATAGCGACACTGCTGCAGGAAACTGCAGCAACGTTTCCAGAGCTTCATCACAGGAGTTATTGTTATCATTACCTCCAGCTAAGAAGTTTCGTTGTGCTGCTCACGCATCTGTTTGCTTAAATATTGGAAGTAATGATATTTCTACTGGAGGAACTAGACCAGTATTATCAGCTGATTACCCAACCTTTCGTTCATCGTCAGATGTCGATGCGTTGGTAGATAAAAACAAAGCCGATACACCTCCATTACGTTGTCTCACTGTGTTTCCACACCCACACTCAGTCCCTTGTTCGCAAAGAACTAGTCCAGTATCTATAGATGTATCATGTCCCGATCCACCTTCAGCCACCGCAACTCCTAAATATTCAAAACAACATGCCTCAGAGAGACTCAACTATCTAGTCGCAAAAGCTCATCG]
[-] EMBL CD065286 [ACTCTTACGTACACCATAGCGACACTGCTGCAGGAAACTGCAGCAACGTTTCCAGAGCTTCATCACAGGAGTTATTGTTATCATTACCTCCAGCTAAGAAGTTTCGTTGTGCTGCTCACGCATCTGTTTGCTTAAATATTGGAAGTAATGATATTTCTACTGGAGGAACTAGACCAGTATTATCAGCTGATTACCCAACCTTTCGTTCATCGTCAGATGTCGATGCGTTGGTAGATAAAAACAAAGCCGATACACCTCCATTACGTTGTCTCACTGTGTTTCCACACCCACACTCAGTCCCTTGTTCGCAAAGAACTAGTCCAGTATCTATAGATGTATCATGTCCCGATCCACCTTCAGCCACCGCAACTCCTAAATATTCAAAACAACATGCCTCAGAGAGACTCAACTATCTAGTCGCAAAAGCTCATCG]
consensusID : consensus_9020#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 325 fasta sequence
[TTTAGCTTCATCACAGGAGTTATTGTTATCATTACCTCCAGCTAAGAAGTTTCGTTGTGCTGCTCACGCATCTGTTTGCTTAAATATTGGAAGTAATGATATTTCTACTGGAGGAACTAGACCAGTATTATCAGCTGATTACCCAACCTTTCGTTCATCGTCAGATGTCGATGCGTTGGTAGATACCCAACAAAACCGATACACCTCCATTACGATGTCTCTCTGTGTTTCCGCACCCACACTCAGTCCCTTGTTCGCAAAGCACTAGTCCAGTATCTATAGATGTATCATGTGCCGATCCACCCAGACCGGGCCGGCCCAATCA]
[-] EMBL CD200787 [TTTAGCTTCATCACAGGAGTTATTGTTATCATTACCTCCAGCTAAGAAGTTTCGTTGTGCTGCTCACGCATCTGTTTGCTTAAATATTGGAAGTAATGATATTTCTACTGGAGGAACTAGACCAGTATTATCAGCTGATTACCCAACCTTTCGTTCATCGTCAGATGTCGATGCGTTGGTAGATACCCAACAAAACCGATACACCTCCATTACGATGTCTCTCTGTGTTTCCGCACCCACACTCAGTCCCTTGTTCGCAAAGCACTAGTCCAGTATCTATAGATGTATCATGTGCCGATCCACCCAGACCGGGCCGGCCCAATCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9020#0 ATTTGATCCCTGGAATCCTTTGGTTTTGTACGTTACAGAACTTTATGTAAATAGCTTTTT 60
consensus_9020#1 ------------------------------------------------------------
consensus_9020#2 ------------------------------------------------------------
consensus_9020#0 AAACCTGGATTTCACAAATCATGTTAACTGAAAAAAAGTCGGGAACCAACTTTACCTGGT 120
consensus_9020#1 ------------------------------------------------------------
consensus_9020#2 ------------------------------------------------------------
consensus_9020#0 TCACAGTCGTCTGAACATCAGACAGATTATGGTCCCAGCACGACCGAAACAACTGATCGA 180
consensus_9020#1 ------------------------------------------------------------
consensus_9020#2 ------------------------------------------------------------
consensus_9020#0 TCTGCAAACAATCCTGGGCCTTATCTAGATGGCACCGTACGTAAAGCTGATGGAATGAGC 240
consensus_9020#1 ------------------------------------------------------------
consensus_9020#2 ------------------------------------------------------------
consensus_9020#0 GATAGTGATTTTGACGAACGAGATGTTTCGGTGGAAGATGATGACAGTATTCCTCCGGAG 300
consensus_9020#1 ------------------------------------------------------------
consensus_9020#2 ------------------------------------------------------------
consensus_9020#0 GAAGATGCTGCTGATGAGGAAAAAGTATCAAGTCTAGTGAAAGAAAGTCAAATGTCATTA 360
consensus_9020#1 ------------------------------------------------------------
consensus_9020#2 ------------------------------------------------------------
consensus_9020#0 GATGAACTTCTAGCTATATACGGAATTCCTGCAAACTCTTACGGACACAATAGCGACACT 420
consensus_9020#1 ----------------------------------ACTCTTACGTACACCATAGCGACACT 26
consensus_9020#2 ------------------------------------------------------------
consensus_9020#0 GCTGCAGGAAACTGCAGCAACGTTTCCAGAGGTAAATCTGGGCGCTTAAAAAGCATTCGA 480
consensus_9020#1 GCTGCAGGAAACTGCAGCAACGTTTCCAGAG----------------------------- 57
consensus_9020#2 ------------------------------------------------------------
consensus_9020#0 CACACTGTTACTCCAAGTTTAGCTTCATCACAGGAGTTATTGTTATCATTACCTCCAGCT 540
consensus_9020#1 ----------------------CTTCATCACAGGAGTTATTGTTATCATTACCTCCAGCT 95
consensus_9020#2 -----------------TTTAGCTTCATCACAGGAGTTATTGTTATCATTACCTCCAGCT 43
**************************************
consensus_9020#0 AAGAAGTTTCGTTGTGCTGCTCACGCATCTGTTTGCTTAAATATTGGAAGTAATGATATT 600
consensus_9020#1 AAGAAGTTTCGTTGTGCTGCTCACGCATCTGTTTGCTTAAATATTGGAAGTAATGATATT 155
consensus_9020#2 AAGAAGTTTCGTTGTGCTGCTCACGCATCTGTTTGCTTAAATATTGGAAGTAATGATATT 103
************************************************************
consensus_9020#0 TCTACTGGAGGAACTAGACCAGTATTATCAGCTGATTACCCAACCTTTCGTTCATCGTCA 660
consensus_9020#1 TCTACTGGAGGAACTAGACCAGTATTATCAGCTGATTACCCAACCTTTCGTTCATCGTCA 215
consensus_9020#2 TCTACTGGAGGAACTAGACCAGTATTATCAGCTGATTACCCAACCTTTCGTTCATCGTCA 163
************************************************************
consensus_9020#0 GATGTCGATGCGTTGGTAGATAAA-AACAAAGCCGATACACCTCCATTACGTTGTCTCAC 719
consensus_9020#1 GATGTCGATGCGTTGGTAGATAAA-AACAAAGCCGATACACCTCCATTACGTTGTCTCAC 274
consensus_9020#2 GATGTCGATGCGTTGGTAGATACCCAACAAAACCGATACACCTCCATTACGATGTCTCTC 223
********************** ****** ******************* ****** *
consensus_9020#0 TGTGTTTTCACACCCACACTCAGTCCCTTGTTCGCAAAGCACTAGTCCAGTATCTATAGA 779
consensus_9020#1 TGTGTTTCCACACCCACACTCAGTCCCTTGTTCGCAAAGAACTAGTCCAGTATCTATAGA 334
consensus_9020#2 TGTGTTTCCGCACCCACACTCAGTCCCTTGTTCGCAAAGCACTAGTCCAGTATCTATAGA 283
******* * ***************************** ********************
consensus_9020#0 TGTATCATGTCCCGATCCACCTTCAGCCACCGCAACTCCTAAATATTCAAAACAACATGC 839
consensus_9020#1 TGTATCATGTCCCGATCCACCTTCAGCCACCGCAACTCCTAAATATTCAAAACAACATGC 394
consensus_9020#2 TGTATCATGTGCCGATCCACC--CAG--ACCGGGCCGGCCCAATCA-------------- 325
********** ********** *** **** * * ***
consensus_9020#0 CTCAGA-AGACTCAACTA-CTAGTCGCAAAAGCTCATCGCGTAGTCATCTACTTAGGTCC 897
consensus_9020#1 CTCAGAGAGACTCAACTATCTAGTCGCAAAAGCTCATCG--------------------- 433
consensus_9020#2 ------------------------------------------------------------
consensus_9020#0 CGCTCAAAATCTAACCTAGCTATTCATACTTCTGAATTATAGGACAGTGCAACTCCTAAT 957
consensus_9020#1 ------------------------------------------------------------
consensus_9020#2 ------------------------------------------------------------
consensus_9020#0 GAAGAGAATCGATTGGAGGAAGAGGACAGTATAAATACTGGCAATCGAATTACAA 1012
consensus_9020#1 -------------------------------------------------------
consensus_9020#2 -------------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||