cluster # 9045

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Schistosoma mansoni
cluster # 9045 cluster # 9045 Sequences # 8 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9045#0 length = 599 sequences # 4

consensus_9045#1 length = 588 sequences # 3
consensus_9045#2 length = 362 sequences # 1

consensusID : consensus_9045#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 599
fasta sequence

                              [ATGTGTAGATTGTATTAGCTTAACTCTATATCCAAGTAAGACAAAAAAAATTGTATTTTGTTCTATCTTTTATTCACATGTATCCTTTTGGTGACCATTTACATTTTATTATTATTATTATTTGCATTAAAAAAATGGCTTTAACTTCCGATCAATTTCAGTTGCTAATCCAGCGACAAGAGCAGCGCTTTAGAAAGAGTCAATTGGATTTCATTGACAAGTTACACGCGAAGCTGCTGAATCACCCATGCTTTGGGGGTGCAACGGAAGTTGACGCATTGATTTCTAAATTGCGTACAGAACTGGAAGTCGATTGCAGAACAAATGAATATGCAGAGGAAAGCCTCAATGAATCCGCGAAAAACAGTAATTTAAAGGCAGCAGTAGCAGTCCTACATGATCAGCCCAGTAGTCCGGTACTGTCTGTTTCAGAGACATGCCCTATACACGGTCCAAGTCCTATTAACCCCGAAAACGGACGTACAAACAGTGAATTATCCTGTTCACAGAAAGTAAATGTCTTGCTAAATGCTTATGAAAGTGCTGCAGTACCCGCGCATGAAGAAATGGGAAACAAATCGAGCAGTATAGTGGATACA]

[+] EMBL CD092895             [ATGTGTAGATTGTATTAGCTTAACTCTATATCCAAGTAAGACAAAAAAAATTGTATTTTGTTCTATCTTTTATTCACATGTATCCTTTTGGTGACCATTTACATTTTATTATTATTATTATTTGCATTAAAAAAATGGCTTTAACTTCCGATCAATTTCAGTTGCTAATCCAGCGACAAGAGCAGCGCTTTAGAAAGAGTCAATTGGATTTCATTGACAAGTTACACGCGAAGCTGCTGAATCACCCATGCTTCGGGGGTGCAACGGAAGTTGACGCATTAATTTCAAAATT                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CD170451             [                                                                                                                                                                                                                               ACACGCGAAGCTGCTGAATCACCCATGCTTTGGGGGTGCAACGGAAGTTGACGCATTGATTTCTAAATTGCGTACAGAACTGGAAGTCGATTGCAGAACAAATGAATATGCAGAGGAAAGCCTCAATGAATCCGCGAAAAACAGTAATTTAAAGGCAGCAGTAGCAGTCCTACATGATCAGCCCAGTAGTCCGGTACTGTCTGTTTCAGAGACATGCCCTATACACGGTCCAAGTCCTATTAACCCCGAAAACGGACGTACAAACAGTGAATTATCCTGTTCACAGAAAGTAAATGTCTTGCTAAATGCTTATGAAAGTGCTGCAGTACCCGCGCATGAAGAAATGGGAAACAAATCGAGCAGTATAGTGGATACA]
[+] EMBL CD120855             [                                                                                                                                                                                                                               ACACGCGAAGCTGCTGAATCACCCATGCTTTGGGGGTGCAACGGAAGTTGACGCATTGATTTCTAAATTGCGTACAGAACTGGAAGTCGATTGCAGAACAAATGAATATGCAGAGGAAAGCCTCAATGAATCCGCGAAAAACAGTAATTTAAAGGCAGCAGTAGCAGTCCTACATGATCAGCCCAGTAGTCCGGTACTGTCTGTTTCAGAGACATGCCCTATACACGGTCCAAGTCCTATTAACCCCGAAAACGGACGTACAAACAGTGAATTATCCTGTTCACAGAAAGTAAATGTCTTGCTAAATGCTTATGAAAGTGCTGCAGTACCCGCGCATGAAGAAATGGGAAACAAATCGAGCAGTATAGTGGATACA]
[+] EMBL CD120854             [                                                                                                                                                                                                                               ACACGCGAAGCTGCTGAATCACCCATGCTTTGGGGGTGCAACGGAAGTTGACGCATTGATTTCTAAATTGCGTACAGAACTGGAAGTCGATTGCAGAACAAATGAATATGCAGAGGAAAGCCTCAATGAATCCGCGAAAAACAGTAATTTAAAGGCAGCAGTAGCAGTCCTACATGATCAGCCCAGTAGTCCGGTACTGTCTGTTTCAGAGACATGCCCTATACACGGTCCAAGTCCTATTAACCCCGAAAACGGACGTACAAACAGTGAATTATCCTGTTCACAGAAAGTAAATGTCTTGCTAAATGCTTATGAAAGTGCTGCAGTACCCGCGCATGAAGAAATGGGAAACAAATCGAGCAGTATAGTGGATACA]




>consensus_9045#0
ATGTGTAGATTGTATTAGCTTAACTCTATATCCAAGTAAGACAAAAAAAATTGTATTTTG
TTCTATCTTTTATTCACATGTATCCTTTTGGTGACCATTTACATTTTATTATTATTATTA
TTTGCATTAAAAAAATGGCTTTAACTTCCGATCAATTTCAGTTGCTAATCCAGCGACAAG
AGCAGCGCTTTAGAAAGAGTCAATTGGATTTCATTGACAAGTTACACGCGAAGCTGCTGA
ATCACCCATGCTTTGGGGGTGCAACGGAAGTTGACGCATTGATTTCTAAATTGCGTACAG
AACTGGAAGTCGATTGCAGAACAAATGAATATGCAGAGGAAAGCCTCAATGAATCCGCGA
AAAACAGTAATTTAAAGGCAGCAGTAGCAGTCCTACATGATCAGCCCAGTAGTCCGGTAC
TGTCTGTTTCAGAGACATGCCCTATACACGGTCCAAGTCCTATTAACCCCGAAAACGGAC
GTACAAACAGTGAATTATCCTGTTCACAGAAAGTAAATGTCTTGCTAAATGCTTATGAAA
GTGCTGCAGTACCCGCGCATGAAGAAATGGGAAACAAATCGAGCAGTATAGTGGATACA

consensusID : consensus_9045#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 588
fasta sequence

                              [TATAAATATACATNCAAATNCNAATATATACTCTCTCACATCAAACCTACCTAATCATGTACAGTTAATTTCATTAACCAAGAAATGTGTCCATCCGCAACTACTACTT---CTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTTCTACTACAAGCCACATTCCAGTCATTTACTCAACTTAACTAAATCAAACAAGTTACGCAACATTACACGTAACACTGTCTAAACAAAAAACTAATGCACATACCTGTCTGCACATTCGAAAATTATACAAATTACCACACACCTATCGCCTTATTATCATCAATAATATTTCTGTCAGTGGTACTTTTATCATTATCATTGCTACTATCGCTATTATCATTTTGGCTATTATTATTATTATTATTTATTATTCACTTACTTTTATACCCCATTTTTTTGTTAAAATCCAACTTCATTTCGTGTGACATTCTATTCCTTATGGTTGTATTTATTATTTTAAAAATGCCTCCCCTTTGTGTTGAGAGCACTTTTCAAATTACAAAAGTATTGGAAATTCTTTGCTTACCATCTTTGCATAGTCTTCTTTA]

[-] EMBL CD120134             [TATAAATATACATNCAAATNCNAATATATACTCTCTCACATCAAACCTACCTAATCATGTACAGTTAATTTCATTAACCAAGAAATGTGTCCATCCGCAACTACTACTT      CTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTTCTACTACAAGCCACATTCCAGTCATTTACTCAACTTAACTAAATCAAACAAGTTACGCAACATTACACGTAACACTGTCTAAACAAAAAACTAATGCACATACCTGTCTGCACATTCGAAAATTATACAAATTACCACACACCTATCGCCTTATTATCATCAATAATATTTCTGTCAGTGGTACTTTTATC                                                                                                                                                                                                                                             ]
[+] EMBL CD124661             [                                                ACCTAATCATGTACAGTTAATTTCATTAACCAAGAAATGTGTCCATCCGCAACCACTACTTCTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTTCTACTACAAGCCACATTCCAGTCATTTACTCAACTTAACTAAATCAAACAAGTTACGCAACATTACACGTAACACTGTCTAAACAAAAAACTAATGCACATACCTGTCTGCACATTCGAAGATTATACAAATTACCACACACCTATCGCCTTATTATCATCAATAATATTTCTGTCAGTGGTACTTTTATCATTATCATTGCTACTATCGCTATTATCATTTTGGCTATTATTATTATTATTATTTATTATTCACTTACTTTTATACCCCATTTTTTTGTTAAAATCCAACTTCATTTCGTGTGACATTCTATTCCTTATGGTTGTATTTATTATTTTAAAAATGCCTCCCCTTTGTGTTGAGAGCACTTTTCAAATTACAAAAGTATTGGAAATTCTTTGCTTACCATCTTTGCATAGTCTTCTTTA]
[-] EMBL CD085342             [                                                             CAGTTAATTTCATTAACCAAGAAATGTGTCCATCCGCAACTACTACTT   CTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACTTCTACTACAAGCCACATTCCAGTCATTTACTCAACTTAACTAAATCAAACAAGTTACGCAACATTACACGTAACACTGTCTAAACAAAAAACTAATGCACATACCTGTCTGCACATTCGAAAATTATACAAATTACCACACACCTATCGCCTTATTATCATCAAT                                                                                                                                                                                                                                                                        ]




>consensus_9045#1
TATAAATATACATNCAAATNCNAATATATACTCTCTCACATCAAACCTACCTAATCATGT
ACAGTTAATTTCATTAACCAAGAAATGTGTCCATCCGCAACTACTACTTCTACTACTACT
ACTACTACTACTACTACTACTACTACTACTACTACTACTTCTACTACAAGCCACATTCCA
GTCATTTACTCAACTTAACTAAATCAAACAAGTTACGCAACATTACACGTAACACTGTCT
AAACAAAAAACTAATGCACATACCTGTCTGCACATTCGAAAATTATACAAATTACCACAC
ACCTATCGCCTTATTATCATCAATAATATTTCTGTCAGTGGTACTTTTATCATTATCATT
GCTACTATCGCTATTATCATTTTGGCTATTATTATTATTATTATTTATTATTCACTTACT
TTTATACCCCATTTTTTTGTTAAAATCCAACTTCATTTCGTGTGACATTCTATTCCTTAT
GGTTGTATTTATTATTTTAAAAATGCCTCCCCTTTGTGTTGAGAGCACTTTTCAAATTAC
AAAAGTATTGGAAATTCTTTGCTTACCATCTTTGCATAGTCTTCTTTA

consensusID : consensus_9045#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 362
fasta sequence

                              [AAAGGAACTGAAAGGAAAGAGGGGAAAAGGAAAGTACAAAAAATATGGAAATAGGTACAAACCACAACCAACACCACATCCAGAAGAACCACAAACTATACCACAACATGGCGAAGACGACCGGAGAAGATGAAGAAAACGAACATGTGATATTGGTAAACATAGGTGAATAAAATACAATTGCACACAACGTGAAAAGTGATCTATATATTACACTAATATGATCTGTTTACACGAGTGAACTGGTGATAATAATAATAATAATAATAGTGGTATCATCATCACCCTATTTACACATCACTTCTAATAACCACTATTATTTTTTTATACTCCAGTGGAAGTTGTATTAGAAAAAAAGCGTC]

[+] EMBL AI447059             [AAAGGAACTGAAAGGAAAGAGGGGAAAAGGAAAGTACAAAAAATATGGAAATAGGTACAAACCACAACCAACACCACATCCAGAAGAACCACAAACTATACCACAACATGGCGAAGACGACCGGAGAAGATGAAGAAAACGAACATGTGATATTGGTAAACATAGGTGAATAAAATACAATTGCACACAACGTGAAAAGTGATCTATATATTACACTAATATGATCTGTTTACACGAGTGAACTGGTGATAATAATAATAATAATAATAGTGGTATCATCATCACCCTATTTACACATCACTTCTAATAACCACTATTATTTTTTTATACTCCAGTGGAAGTTGTATTAGAAAAAAAGCGTC]




>consensus_9045#2
AAAGGAACTGAAAGGAAAGAGGGGAAAAGGAAAGTACAAAAAATATGGAAATAGGTACAA
ACCACAACCAACACCACATCCAGAAGAACCACAAACTATACCACAACATGGCGAAGACGA
CCGGAGAAGATGAAGAAAACGAACATGTGATATTGGTAAACATAGGTGAATAAAATACAA
TTGCACACAACGTGAAAAGTGATCTATATATTACACTAATATGATCTGTTTACACGAGTG
AACTGGTGATAATAATAATAATAATAATAGTGGTATCATCATCACCCTATTTACACATCA
CTTCTAATAACCACTATTATTTTTTTATACTCCAGTGGAAGTTGTATTAGAAAAAAAGCG
TC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9045#0      -ATGTGTAGATTGTATTAGCTTAACTCTATATCCAAGTAAGACAAAAAAAATTGTATTTT 59
consensus_9045#2      ------------------------------------------------------------
consensus_9045#1      TATAAATATACATNCAAATNCNAATATATACTCTCTCACATCAAACCTACCTAATCATGT 60
                                                                                  

consensus_9045#0      GTTCTATCTTTTATTCACATGTATCCTTTTGGTGACCATTTACATTTTATTATTATTATT 119
consensus_9045#2      ------------------------------------------------------------
consensus_9045#1      ACAGTTAATTTCATTAACCAAGAAATGTGTCCATCCGCAACTACTACTTCTACTACTACT 120
                                                                                  

consensus_9045#0      ATTTGCATTAAAAAAATGGCTTTAACTTCCGATCAATTTCAGTTGCTAATCCAGCGACAA 179
consensus_9045#2      ------------------------------------------------------------
consensus_9045#1      ACTACTACTACTACTACTACTACTACTACTACTACTACTTCTACTACAAGCCACATTCCA 180
                                                                                  

consensus_9045#0      GAGCAGCGCTTTAGAAAGAGTCAATTGGATTTCATTGACAAGTTACACGCGAAGCTGCTG 239
consensus_9045#2      ---------------------------AAAGGAACTGAAAGGAAAGAGGGGAAAAGG--A 31
consensus_9045#1      GTCATTTACTCAACTTAACTAAATCAAACAAGTTACGCAACATTACACGTAACACTGTCT 240
                                                          *  *    * * *  *    *   

consensus_9045#0      AATCACCCATGCTTTGGGGGTGCA-ACGGAAGTTGACGCAT-TGATTTCTAAATTGCGTA 297
consensus_9045#2      AAGTACAAAAAATATGGAAATAGGTACAAACCACAACCAACACCACATCCAGAAGAACCA 91
consensus_9045#1      AAACAAAAAACTAATGCACATACCTGTCTGCACATTCGAAAATTATAC---AAATTACCA 297
                      **  *   *     **    *               *  *    *       *      *

consensus_9045#0      CAGAACTGGAAGTCGATTG-CAGAACAAATGAATATGCAGAGGAAAGCCTCAATGAATCC 356
consensus_9045#2      CA-AACTATA---CCACAA-CATGGCGAAGACGACCGGAGAAGATGAAGAAAACGAACAT 146
consensus_9045#1      CACACCTATCGCCTTATTATCATCAATAATATTTCTGTCAGTGGTACTTTTATCATTATC 357
                      ** * **        *    **     **       *     *        *        

consensus_9045#0      GCGAAAAACAGTAATTTAAAGGCAGCAGTAGCAGTCCTACATGATCAGCCC-AGTAGTCC 415
consensus_9045#2      GTGATATTGGTAAACATAGGTGAATAAAATACAATTGCACACAACGTGAAA-AGTGATC- 204
consensus_9045#1      ATTGCTACTATCGCTATTATCATTTTGGCTATTATTATTATTATTATTTATTATTCACTT 417
                                      *                 *                 * *     

consensus_9045#0      GGTACTGTCT---GTTTCAGAGACATGCCCTATACACGGTCCAAGTCCTA--TTAACCCC 470
consensus_9045#2      -----TATAT---ATTACACTAATATGATCTGTTTACA---CGAGTGA-A--CTGGTGAT 250
consensus_9045#1      ACTTTTATACCCCATTTTTTTGTTAAAATCCAACTTCATTTCGTGTGACATTCTATTCCT 477
                           * *      **        *    *      *    *  **   *   *      

consensus_9045#0      GAAAACGGACGTACAAACAGTGAATTATCCTGTTCACAGAAAGTAAATGTCTTGCTAAAT 530
consensus_9045#2      AATAATAATAATAATAATAGTGG--TATCATCATCACCCTATTTACACATCACTTCTAAT 308
consensus_9045#1      TATGGTTGTATTTATTATTTTAA--AAATGCCTCCCCTTTGTGTTGAGAGCACTTTTCA- 534
                       *         *    *   *     *       * *      *  *   *       * 

consensus_9045#0      GCTTATGAAAGTGCTGCAGTACCCGCGCATGAAGAAATGGGAAACAAATCGAGCAGTATA 590
consensus_9045#2      AACCACTATTATTTTTTTATACTCCAGTG-GAAGTTGTATTAGAAAAAAAGCGTC----- 362
consensus_9045#1      AATTACAAAAGTATTG--GAAATTCTTTGCTTACCATCTTTGCATAGTCTTCTTTA---- 588
                          *  *   *  *     *           *          * *              

consensus_9045#0      GTGGATACA 599
consensus_9045#2      ---------
consensus_9045#1      ---------