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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9050#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1136 fasta sequence
[GTTGTTTTGAAGTATGAAAAGCTAGAGAAAATTGGAGAAGGCACATATGGTAAAGTTTATAAAGCGAGAAACCGAGAAACGCATGAAATTGTCGCACTTAAACGTGTTCGACTAGAAAATGATGATGAAGGTATTCCTAGTTCAGCTTTTCGAGAAATATGCCTCTTAAAAGAACTCAAACATAAGAACATTGTCAGACTTTTTGACGTCCTGTTAAGCGAGTCAAGGCTAACAATTGTATTTGAATATTGTGATCAAGATTTGAAGAAATACTTCGACAGTTGTGATGGCGATATAGATCAGAATACTGTAAAGCTTTTTATGTTTCAACTTCTGCGTGGTCTTCAGTTCTGTCACAGTCACAACGTTTTACACCGGGACTTGAAGCCACAAAATCTACTGATCAATGATAATGGAGAGTTGAAGTTGGCTGATTTCGGTCTGGCTCGTGCATACGGAATACCCGTGCGACAGTACTCAGCAGAAGTTGTCACACTTTGGTATCGACCACCAGATGTTCTTCTTGGAGCTAAATTATACACAACTTCAATTGATATGTGGTCAGCTGGTTGTATTTTCGCTGAAATGTCCAATGCTGGAAGACCACTTTTCCCTGGTTATGATGTTGATGATCAATTACAGAGAATTTTCAAATTATTAGGAACTCCGACTGAATCAACCTGGCCATCTGTTGTTGAATTACCCGACTATGAACCATTTACTGTAATGTACCCTCGTACAATGAATTGGCATCAAGTTGTTCCGAAAATGTCATTTCGTGGTCGTGATTTATTACAACAACTTGTGGTCTGTAATCCAGCAGATCGAATGTCAGCTGATCAAGCATTAAAACATTCATATTTTGAGAGTATTCTGTGATATTAATAAAGAAATTCTGCTTTTCTTGTGATCAATTTTAAAATCGAGAAATCAAAC-AAATTTTATCGAGTAGTTATTTACCTATAGAAGGAGTGATATAATTCCAGAACAGTATTTTCTAAAGACATTTATTGTAAATGTATAAATGATCATTATGATTATTGTTGAAGTTTTTACAAACTTTGTTGAAAAAGAAATCATTAACTGTTGACTTTTTGGTTAGAAAACGTTTGTATGTATCACTTTAAACAAATCAT]
[+] EMBL CD111220 [GTTGTTTTGAAGTATGAAAAGCTAGAGAAAATTGGAGAAGGCACATATGGTAAAGTTTATAAAGCGAGAAACCGAGAAACGCATGAAATTGTCGCACTTAAACGTGTTCGACTAGAAAATGATGATGAAGGTATTCCTAGTTCAGCTTTTCGAGAAATATGCCTCTTAAAAGAACTCAAACATTAGAACATTGTCAGACTTTTTGACGTCCTGTTAAGCGAGTCAAGGCTAACAATTGTATTTGAATATTGTGATCAAGATTTGAAGAAATACTTCGACAGTTGTGATGGCGATATAGATCAGAATACTGTAAAGCTTTTTATGTTTCAACTTTTGCGTGGTCTTCAGTTCTGTCACAGTCACAACGTTTTACACCGGGACTTGAAGCCACAAAATCTACTGATCAATGATAATGGAGAGTTGAAGTTGGCTGATTTCGGTCTGGCTC ]
[+] EMBL CD065381 [ TGGAGAAGGTACATATGGTAAAGTTTATAAAGCGAGAAACCGAGAAACGCATGAAATTGTCGCACTTAAACGTGTTCGACTAGAAAATGATGATGAAGGTATTCCTAGTTCAGCTTTTCGAGAAATATGCCTCTTAAAAGAACTCAAACATAAGAACATTGTCAGACTTTTTGACGTCCTGTTAAGCGAGTCAAGGCTAACAATTGTATTTGAATATTGTGATCAAGATTTGAAGAAATACTTCGACAGTTGTGATGGCGATATAGATCAGAATACTGTAAAGCTTTTTATGTTTCAACTTCTGCGTGGTCTTCAGTTCTGTCACAGTCACAACGTTTTACACCGGGACTTGAAGCCACAAAATCTACTGATCAATGATAATGGAGAGTTGAAGTTGGCTGATTTCGGTCTGGCTCGTGCATACGGAATACCCGTGCGACAGTACTCAGCAGAAGTTGTCACACTTTGGTATCGACCACCAGATGTTCTTCTTGGAGCTAAATTATACACAACTTCAATTGATATGTGGTCAGCTGGTTGTATTTTCGCTGAAATGTCCAATGCTGG ]
[+] EMBL CD078568 [ GAGAAACCGAGAAACGCATGAAATTGTCGCACTTAAACGTGTTCGACTAGAAAATGATGATGAAGGTATTCCTAGTTCAGCTTTTCGAGAAATATGCCTCTTAAAAGAACTCAAACATAAGAACATTGTCAGACTTTTTGACGTCCTGTTAAGCGAGTCAAGGCTAACAATTGTATTTGAATATTGTGATCAAGATTTGAAGAAATACTTCGACAGTTGTGATGGCGATATAGATCAGAATACTGTAAAGCTTTTTATGTTTCAACTTCTGCGTGGTCTTCAGTTCTGTCACAGTCACAACGTTTTACACCGGGACTTGAAGCCACAAAATCTACTGATCAATGATAATGGAGAGTTGAAGTTGGCTGATTTCGGTCTGGCTCGTGCATACGGAATACCCGTGCGACAGTACTCAGCAGAAGTTGTCACACTTTGGTATCGACCACCAGATGTTCTTCTTGGAGCTAAATTATACACAACTTCAATTGATATGTGGTCAGCTGGTTGTATTTTCGCTGAAATGTCCAATGCTGGAAGACCACTTTTCCCTGGTTATGATGTTGATGATCAATTACAGAGAATTTTCAAATTATTAGGAACTC ]
[+] EMBL CD077361 [ gTCTGCGTGGTCTTCAGTTCTGTCACAGTCACAACGTTTTACACCGGGACTTGAAGCCACAAAATCTACTGATCAATGATAATGGAGAGTTGAAGTTGGCTGATTTCGGTCTGGCTCGTGCATACGGAATACCCGTGCGACAGTACTCAGCAGAAGTTGTCACACTTTGGTATCGACCACCAGATGTTCTTCTTGGAGCTAAATTATACACAACTTCAATTGATATGTGGTCAGCTGGTTGTATTTTCGCTGAAATGTCCAATGCTGGAAGACCACTTTTCCCTGGTTATGATGTTGATGATCAATTACAGAGAATTTTCAAATTATTAGGAACTCCGACTGAATCAACCTGGCCATCTGTTGTTGAATTACCCGACTATGAACCATTTACTGTAATGTACCCTCGTACAATGAATTGGCATCAAGTTGTTCCGAAAATGTCATTTCGTGGTCGTGATTTATTACAACAACTTGTGGTCTGTAATCCAGCAGATCGAATGTCAGCTGATCAAGCATTAAAACATTCATATTTTGAGAGTA ]
[+] EMBL CD187809 [ ACGGAATACCCGTGCGACAGTACTCAGCAGAAGTTGTCACACTTTGGTATCGACCACCAGATGTTCTTCTTGGAGCTAAATTATACACAACTTCAATTGATATGTGGTCAGCTGGTTGTATTTTCGCTGAAATGTCCAATGCTGGAAGACCACTTTTCCCTGGTTATGATGTTGATGATCAATTACAGAGAAGTTTCNAATTATTAGGAACTCCGACTGAATCAACCTGGCCATCTGTTGTTGAATTACCCGACTATGAACCATTTACTGTAATGTACCCTCGTACAATGAATTGGCATCAAGTTGTTCCGAAAATGTCATTTCGTGGTCGTGATTTATTACAACAACTTGTGGTCTGTAATCCAGCAGATCGAATGTCAGCTGATCAAGCATTAAAACATTCATATTTTGAGAGTATTCTGTGATATTAATAAAGAAATTCTGCTTTTCTTGTGATCAATTTTAAAATCGAGAAATCAAAC AAATTTTATCGAGTAGTTATTTACCTATAGAAGGAGT ]
[-] EMBL CD073035 [ TCCAATGCTGGAAGACCACTTTTCCCTGGTTATGATGTTGATGATCAATTACAGAGAATTTTCAAATTATTAGGAACTCCGACTGAATCAACCTGGCCATCTGTTGTTGAATTACCCGACTATGAACCATTTACTGTAATGTACCCTCGTACAATGAATTGGCATCAAGTTGTTCCGAAAATGTCATTTCGTGGTCGT ATTTATTACAACAACTTGTGGTCTGTAATCCAGCAGATCGAATGTCAGCTGATCAAGCATTAAAACATTCATATTTTGAGAGTATTCTGTGATATTAATAAAGAAATTCTGCTTTTCTTTAAATCAATTTAAAAATCGAGAAATCAAACAAAATTTTATCGATTAATTATTTACTTATAAAAGGAATGATATAATTCCAGAACAGTATTTTCTAAAGACATTTATTGTAAATGTATAAATGATCATTATGATTATTGTTGAAGTTTTTACAAACTTTGTTGAAAAAGAAATCATTAACTGTTGACTTTTTGGTTAGAAAACGTTTGTATGTATCACTTTAAACAAATCAT]
[+] EMBL SM046 [ TGAATTACCCGACTATGAACCATTTACTGTAATGTACCCTCGTACAATCAATTGGCATCAAGTTGTTCCGAAAATGTCATTTCGTGGTCGTGATTTATTACAACAACTTGTTGTCTGTAATCCAGCAGATCGAATGTCAGCTGATCAAGCATTAAAACATTCATA TTTGAGAGTATTCTGTGATATTAATAAAGAA ]
consensusID : consensus_9050#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 968 fasta sequence
[CTCGAGGCCAAAAGTTCGGCACGAGGCGGCACGAGGCGAGAAACCGAGAAACGCATGAAATTGTCGCACTTAAACGTGTTCGACTAGAAAATGATGATGAAGGTATTCCTAGTTCAGCTTTTCGAGAAATATGCCTCTTAAAAGAACTCAAACATAAGAACATTGTCAGACTTTTTGACGTCCTGTTAAGCGAGTCAAGGCTAACAATTGTATTTGAATATTGTGATCAAGATTTGAAGAAATACTTCGACAGTTGTGATGGCGATATAGATCAGAATACTGTAAAGCTTTTTATGTTTCAACTTCTGCGTGGTCTTCAGTTCTGTCACAGTCACAACGTTTTACACCGGGACTTGAAGCCACAAAATCTACTGATCAATGATAATGGAGAGTTGAAGTTGGCTGATTTCGGTCTGGCTCGTGCATACGGAATACCCGTGCGACAGTACTCAGCAGAAGTTGTCACACTTTGGTATCGACCACCAGATGTTCTTCTTGGAGCTAAATTATACACAACTTCAATTGATATGTGGTCAGCTGGTTGTATTTTCGCTGAAATGTCCAATGCTGGAAGACCACTTTTCCCTGGTTATGATGTTGATGATCAATTACAGAGAATTTTCAAATTATTAGGAACTCCGACTGAATCAACCTGGCCATCTGTTGTTGAATTACCCGACTATGAACCATNTACTGGTATGTACCCTCGTACAATGAATTGGCATCAAGTTGTTCCGAAAATGTCATTTCGTGGTCGTGATTATTANNCACACTGTGGTCTGTATCCAGCAGATCGATGTCAGCTGATCAGCATTAAACATTCATATTTGAGAGTATCTGNGATATATAAGAAATCTGCTTTCTTAAATCATTAAATCGGAATCACAATTTATCGTATATTACTTAAAGATGANNTATCGACGTTTTCTAGATTATGAATGTAAGACTTGAATGTGAGTTTCACTGTG]
[+] EMBL CD079537 [CTCGAGGCCAAAAGTTCGGCACGAGGCGGCACGAGGCGAGAAACCGAGAAACGCATGAAATTGTCGCACTTAAACGTGTTCGACTAGAAAATGATGATGAAGGTATTCCTAGTTCAGCTTTTCGAGAAATATGCCTCTTAAAAGAACTCAAACATAAGAACATTGTCAGACTTTTTGACGTCCTGTTAAGCGAGTCAAGGCTAACAATTGTATTTGAATATTGTGATCAAGATTTGAAGAAATACTTCGACAGTTGTGATGGCGATATAGATCAGAATACTGTAAAGCTTTTTATGTTTCAACTTCTGCGTGGTCTTCAGTTCTGTCACAGTCACAACGTTTTACACCGGGACTTGAAGCCACAAAATCTACTGATCAATGATAATGGAGAGTTGAAGTTGGCTGATTTCGGTCTGGCTCGTGCATACGGAATACCCGTGCGACAGTACTCAGCAGAAGTTGTCACACTTTGGTATCGACCACCAGATGTTCTTCTTGGAGCTAAATTATACACAACTTCAATTGATATGTGGTCAGCTGGTTGTATTTTCGCTGAAATGTCCAATGCTGGAAGACCACTTTTCCCTGGTTATGATGTTGATGATCAATTACAGAGAATTTTCAAATTATTAGGAACTCCGACTGAATCAACCTGGCCATCTGTTGTTGAATTACCCGACTATGAACCATNTACTGGTATGTACCCTCGTACAATGAATTGGCATCAAGTTGTTCCGAAAATGTCATTTCGTGGTCGTGATTATTANNCACACTGTGGTCTGTATCCAGCAGATCGATGTCAGCTGATCAGCATTAAACATTCATATTTGAGAGTATCTGNGATATATAAGAAATCTGCTTTCTTAAATCATTAAATCGGAATCACAATTTATCGTATATTACTTAAAGATGANNTATCGACGTTTTCTAGATTATGAATGTAAGACTTGAATGTGAGTTTCACTGTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9050#0 GTTGTTTTGAAGTATGAAAAGCTAGAGAAAATTGGAGAAGGCACATATGGTAAAGTTTAT 60
consensus_9050#1 ---------------------CTCGAGGCC-----AAAAGTTCGGCACGAGGCGG--CAC 32
** *** * *** * * * *
consensus_9050#0 AAAGCGAGAAACCGAGAAACGCATGAAATTGTCGCACTTAAACGTGTTCGACTAGAAAAT 120
consensus_9050#1 GAGGCGAGAAACCGAGAAACGCATGAAATTGTCGCACTTAAACGTGTTCGACTAGAAAAT 92
* *********************************************************
consensus_9050#0 GATGATGAAGGTATTCCTAGTTCAGCTTTTCGAGAAATATGCCTCTTAAAAGAACTCAAA 180
consensus_9050#1 GATGATGAAGGTATTCCTAGTTCAGCTTTTCGAGAAATATGCCTCTTAAAAGAACTCAAA 152
************************************************************
consensus_9050#0 CATAAGAACATTGTCAGACTTTTTGACGTCCTGTTAAGCGAGTCAAGGCTAACAATTGTA 240
consensus_9050#1 CATAAGAACATTGTCAGACTTTTTGACGTCCTGTTAAGCGAGTCAAGGCTAACAATTGTA 212
************************************************************
consensus_9050#0 TTTGAATATTGTGATCAAGATTTGAAGAAATACTTCGACAGTTGTGATGGCGATATAGAT 300
consensus_9050#1 TTTGAATATTGTGATCAAGATTTGAAGAAATACTTCGACAGTTGTGATGGCGATATAGAT 272
************************************************************
consensus_9050#0 CAGAATACTGTAAAGCTTTTTATGTTTCAACTTCTGCGTGGTCTTCAGTTCTGTCACAGT 360
consensus_9050#1 CAGAATACTGTAAAGCTTTTTATGTTTCAACTTCTGCGTGGTCTTCAGTTCTGTCACAGT 332
************************************************************
consensus_9050#0 CACAACGTTTTACACCGGGACTTGAAGCCACAAAATCTACTGATCAATGATAATGGAGAG 420
consensus_9050#1 CACAACGTTTTACACCGGGACTTGAAGCCACAAAATCTACTGATCAATGATAATGGAGAG 392
************************************************************
consensus_9050#0 TTGAAGTTGGCTGATTTCGGTCTGGCTCGTGCATACGGAATACCCGTGCGACAGTACTCA 480
consensus_9050#1 TTGAAGTTGGCTGATTTCGGTCTGGCTCGTGCATACGGAATACCCGTGCGACAGTACTCA 452
************************************************************
consensus_9050#0 GCAGAAGTTGTCACACTTTGGTATCGACCACCAGATGTTCTTCTTGGAGCTAAATTATAC 540
consensus_9050#1 GCAGAAGTTGTCACACTTTGGTATCGACCACCAGATGTTCTTCTTGGAGCTAAATTATAC 512
************************************************************
consensus_9050#0 ACAACTTCAATTGATATGTGGTCAGCTGGTTGTATTTTCGCTGAAATGTCCAATGCTGGA 600
consensus_9050#1 ACAACTTCAATTGATATGTGGTCAGCTGGTTGTATTTTCGCTGAAATGTCCAATGCTGGA 572
************************************************************
consensus_9050#0 AGACCACTTTTCCCTGGTTATGATGTTGATGATCAATTACAGAGAATTTTCAAATTATTA 660
consensus_9050#1 AGACCACTTTTCCCTGGTTATGATGTTGATGATCAATTACAGAGAATTTTCAAATTATTA 632
************************************************************
consensus_9050#0 GGAACTCCGACTGAATCAACCTGGCCATCTGTTGTTGAATTACCCGACTATGAACCATTT 720
consensus_9050#1 GGAACTCCGACTGAATCAACCTGGCCATCTGTTGTTGAATTACCCGACTATGAACCATNT 692
********************************************************** *
consensus_9050#0 ACTGTAATGTACCCTCGTACAATGAATTGGCATCAAGTTGTTCCGAAAATGTCATTTCGT 780
consensus_9050#1 ACTGGTATGTACCCTCGTACAATGAATTGGCATCAAGTTGTTCCGAAAATGTCATTTCGT 752
**** ******************************************************
consensus_9050#0 GGTCGTGATTTATTACAACAACTTGTGGTCTGTAATCCAGCAGATCGAATGTCAGCTGAT 840
consensus_9050#1 GGTCGTGATT-ATTANN-CACACTGTGGTCTGTA-TCCAGCAGATCGA-TGTCAGCTGAT 808
********** **** ** *********** ************* ***********
consensus_9050#0 CAAGCATTAAAACATTCATATTTTGAGAGTATTCTGTGATATTAATAAAGAAATTCTGCT 900
consensus_9050#1 CA-GCATTAAA-CATTCATATTT-GAGAGTAT-CTGNGATAT--ATAAGAAA--TCTGCT 860
** ******** *********** ******** *** ***** **** ** ******
consensus_9050#0 TTTCTTGTGATCAATTTTAAAATCGAGAAATCAAACAAATTTTATCGAGTAGTTATTTAC 960
consensus_9050#1 TTCTTA------AATCATTAAATCGG------AATCACAATTTATCGTATA-TTACTTAA 907
** * *** * ****** ** ** * ******* ** *** ***
consensus_9050#0 CTATAGAAGGAGTGATATAATTCCAGAACAGTATTTTCTAAAGACATTTATTGTAAATGT 1020
consensus_9050#1 AGAT-GANNTATCGACGTT-TTCTAGATTATGAATGT---AAGAC-TTGAATGTGAGTTT 961
** ** * ** * *** *** * * * * ***** ** * *** * * *
consensus_9050#0 ATAAATGATCATTATGATTATTGTTGAAGTTTTTACAAACTTTGTTGAAAAAGAAATCAT 1080
consensus_9050#1 CACTGTG----------------------------------------------------- 968
**
consensus_9050#0 TAACTGTTGACTTTTTGGTTAGAAAACGTTTGTATGTATCACTTTAAACAAATCAT 1136
consensus_9050#1 --------------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||