cluster # 9051

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Schistosoma mansoni
cluster # 9051 cluster # 9051 Sequences # 8 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9051#0 length = 658 sequences # 4

consensus_9051#1 length = 394 sequences # 3
consensus_9051#2 length = 338 sequences # 1

consensusID : consensus_9051#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 658
fasta sequence

                              [GGCTCACGGAACTCTCATGATCATTAACTTATATGTCTCATATATATTTAATTATGGATTAACTTCTTTTTTATTCAAACAGCTGCTCCAGCAATTTATAGTAGTGGATCCATTACTTATACAACAAATGATGAAATGTCATTACAATGTACTGATGAATCATCTTCACCTGAATCAAAAGTAGACTGGATATTTGAACCATCTGGTAAAATGCCACCAGAACGTAGATTACCAAAATTATTTGGAAATACATATGCTTATGGAAGAATTTATATATTTGCTATTGCAAGAGGTCAACTAATCCCGGAACATTCAGGAAAGTACACATGTATAGCTACAAATCCTTATGGAACAGCTAATAGTTCAATTACAGTAACAGTAACTGAAGATCTTTCACGTGGAAAACTTCGTTT-TGTTCGAAGAATAATTCGTCGTGCATTTTCTGGATAAACGATTAATGATGAAAGAAAAAAAGAAAAGAAAGAAAAGAAAAAGAGAAAAGAAAATAAAGAAAAGAAAAATCCCACATATGACTTAATTGATTATTATTGATTATTTAG---TATTATTATTATTAATCATTGATAGTTATAAACGCACACACACACACCTTCATATTAGAAATCGATAATTAATGAATGAAATAAGAAAAAAACTACAC]

[+] EMBL CD065595             [GGCTCACGGAACTCTCATGATCATTAACTTATATGTCTCATATATATTTAATTATGGATTAACTTCTTTTTTATTCAAACAGCTGCTCCAGCAATTTATAGTAGTGGATCCATTACTTATACAACAAATGATGAAATGTCATTACAATGTACTGATGAATCATCTTCACCTGAATCAAAAGTAGACTGGATATTTGAACCATCTGGTAAAATGCCACCAGAACGTAGATTACCAAAATTATTTGGAAATACATATGCTTATGGAAGAATTTATATATTTGCTATTGCAAGAGGTCAACTAATCCCGGAACATTCAGGAAAGTACACATGTATAGCTACAAATCCTTATGGAACAGCTAATAGTTCAATTACAGTAACAGTAACTGAAGATCTTTCACGTGGAAAACTTCGTTT TGTTCGAAGAATAATTCGTCGTGCATTTTCTGGATAAACGATTAATGATGAAAGAAAACAAGAAAAGAAAGAAAAGAAA                                                                                                                                                                         ]
[+] EMBL CD135542             [                                                                                                                                                                                                          CTGGTAAAATGCCACCAGAACGTAGATTACCAAAATTAATTGGAAATACATATGCTTATGGAAGAATTTATATATTTGCTATTGCAAGAGGTCAACTAATCCCGGAACATTCAGGAAAGTACACATGTATAGCTACAAATCCTTATGGAACAGCTAATAGTTCAATTACAGTAACAGTAACTGAAGATCTTTCACGTGGAAAACTTCGTTT TGTTCGAAGAATAATTCGTCGTGCATTTTCTGGATNAACGATTAATGATGAAAGGAAAAAAGAAAAGAAAGAAAAGAAAAAGAGAAAAGAAAATAAAGAAAAGAAAAATCCCACATATGACTTAATTGATTATTATTGATTATTTAG   TATTATTATTATTAATCATTGATAGTTATA                                                                    ]
[-] EMBL CD065478             [                                                                                                                                                                                                                                                                                                                                   CACATGTATAGCTACAAATCCTTATGGAACAGCTAATAGTTCAATTACAGTAACAGTAACTGAAGATCTTTCACGTGGAAAACTTCGTTT TGTTCGAAGAATAATTCGTCGTGCATTTTCTGGATAAACGATTAATGATGAAAGAAAAAAAGAAAAGAAAGAAAAGAAAAAGAGAAAAGAAAATAAAGAAAAGAAAAATCCCACATATGACTTAATTGATTATTATTGATTATTTAGTATTATTATTATTATTAATCATTGATAGTTATAAACGCACACACACACACCTTCATATTAGAAATCGATAATTAATGAATGAAATAAGAAAAAAACTACAC]
[-] EMBL CD065671             [                                                                                                                                                                                                                                                                                                                                   CACATGTATAGCTACAAATCCTTATGGAACAGCTAATAGTTCAA TACAGTAACAGTAACTGAAGATCTT  ACGTGG AAACTTCGTTTCTGT                                                                                                                                                                                                                                                     ]




>consensus_9051#0
GGCTCACGGAACTCTCATGATCATTAACTTATATGTCTCATATATATTTAATTATGGATT
AACTTCTTTTTTATTCAAACAGCTGCTCCAGCAATTTATAGTAGTGGATCCATTACTTAT
ACAACAAATGATGAAATGTCATTACAATGTACTGATGAATCATCTTCACCTGAATCAAAA
GTAGACTGGATATTTGAACCATCTGGTAAAATGCCACCAGAACGTAGATTACCAAAATTA
TTTGGAAATACATATGCTTATGGAAGAATTTATATATTTGCTATTGCAAGAGGTCAACTA
ATCCCGGAACATTCAGGAAAGTACACATGTATAGCTACAAATCCTTATGGAACAGCTAAT
AGTTCAATTACAGTAACAGTAACTGAAGATCTTTCACGTGGAAAACTTCGTTTTGTTCGA
AGAATAATTCGTCGTGCATTTTCTGGATAAACGATTAATGATGAAAGAAAAAAAGAAAAG
AAAGAAAAGAAAAAGAGAAAAGAAAATAAAGAAAAGAAAAATCCCACATATGACTTAATT
GATTATTATTGATTATTTAGTATTATTATTATTAATCATTGATAGTTATAAACGCACACA
CACACACCTTCATATTAGAAATCGATAATTAATGAATGAAATAAGAAAAAAACTACAC

consensusID : consensus_9051#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 394
fasta sequence

                              [CTGAAGATATTACTGGTTGGAGAACTAATCAATTACAGTTAAATAAGTTACGTTTACCAAGTACAACTTTATCAGATGAATCAATTTATGAAGTACGATGTGTTGCATCTTATAATGATACTTATAATACATCATCACATCCATTCATTATTAATGTGAGAAATAAACCAATGATCAAATCAATACGTATAGATCGTGTAAAACCAGATGAATCTATTCTAGAACCAGCTGATTTACCTAAAGATTCATATGATTCAACACAAGATTATGAACTTGGATGTAAACCGGAAGTGACTTCAGGCGAAGCTGTCGCGACATGGTTTAAATGT-CAAAATGATGATTGTACTTCATTAAAAGAAATTGTATTAACTGGTGATGCGGGTACCGAGAACGA]

[+] EMBL CD139716             [CTGAAGATATTACTGGTTGGAGAACTAATCAATTACAGTTAAATAAGTTACGTTTACCAAGTACAACTTTATCAGATGAATCAATTTATGAAGTACGATGTGTTGCATCTTATAATGATACTTATAATACATCATCACATCCATTCATTATTAATGTGAGAAATAAACCAATGATCAAATCAATACGTATAGATCGTGTAAAACCAGATGAATCTATTCTAGAACCAGCTGATTTACCTAAAGATTCATATGATTCAACACAAGATTATGAACTTGGATGTAAACCGGAAGTGACTTCAGGCGAAGCTGTCGCGACATGGTTTAAATGT CAAAATGATGAT                                                     ]
[+] EMBL CD139682             [CTGAAGATATTACTGGTTGGAGAACTAATCAATTACAGTTAAATAAGTTACGTTTACCAAGTACAACTTTATCAGATGAATCAATTTATGAAGTACGATGTGTTGCATCTTATAATGATACTTATAATACATCATCACATCCATTCATTATTAATGTGAGAAATAAACCAATGATCAAATCAATACGTATAGATCGTGTAAAACCAGATGAATCTATTCTAGAACCAGCTGATTTACCTAAAGATTCATATGATTCAACACAAGATTATGAACTTGGATGNTAACCGGAAGTGACTTCAGGCGAAGCGGTCGCGACATGGTTTAAATGTNCAAA                                                             ]
[-] EMBL CD128787             [                                                                                TCAATTTATGAAGTACGATGTGTTGCATCTTATAATGATACTTATAATACATCATCACATCCATTCATTATTAATGTGAGAAATAAACCAATGATCAAATCAATACGTATAGATCGTGTAAAACCAGATGAATCTATTCTAGAACCAGCTGATTTACCTAAAGATTCATATGATTCAACACAAGATTATGAACTTGGATGTAAACCGGAAGTGACTTCAGGCGAAGCTGTCGCGACATGGTTTAAATGT CAAAATGATGATTGTACTTCATTAAAAGAAATTGTATTAACTGGTGATGCGGGTACCGAGAACGA]




>consensus_9051#1
CTGAAGATATTACTGGTTGGAGAACTAATCAATTACAGTTAAATAAGTTACGTTTACCAA
GTACAACTTTATCAGATGAATCAATTTATGAAGTACGATGTGTTGCATCTTATAATGATA
CTTATAATACATCATCACATCCATTCATTATTAATGTGAGAAATAAACCAATGATCAAAT
CAATACGTATAGATCGTGTAAAACCAGATGAATCTATTCTAGAACCAGCTGATTTACCTA
AAGATTCATATGATTCAACACAAGATTATGAACTTGGATGTAAACCGGAAGTGACTTCAG
GCGAAGCTGTCGCGACATGGTTTAAATGTCAAAATGATGATTGTACTTCATTAAAAGAAA
TTGTATTAACTGGTGATGCGGGTACCGAGAACGA

consensusID : consensus_9051#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 338
fasta sequence

                              [TTNNAAATGTCAAAATGATGATTGTACTTCATTAAAAGAAATTGTATTAACTGGTGATAGATTATTTTACTTTGCTAATTCAACAAGATATATAGATGAAGGAAGATTTAGATGTCAAGTTAGTTTACAATTAAAAGAATATAATTTTAAACTTATTGAACATCAAGATGTCATCATTAAACGTCAAGCTGCTCCAGCAATTTATAGTAGTGGATCCATTACTTATACAACAAATGATGAAATGTCATTACAATGTACTGATGAATCATCTTCGCCTGAATCAAAAGTAGACTGGATATTTGAACCATCTGGTAAAATGCCACCAGAACGTAGATTAC]

[-] EMBL CD139566             [TTNNAAATGTCAAAATGATGATTGTACTTCATTAAAAGAAATTGTATTAACTGGTGATAGATTATTTTACTTTGCTAATTCAACAAGATATATAGATGAAGGAAGATTTAGATGTCAAGTTAGTTTACAATTAAAAGAATATAATTTTAAACTTATTGAACATCAAGATGTCATCATTAAACGTCAAGCTGCTCCAGCAATTTATAGTAGTGGATCCATTACTTATACAACAAATGATGAAATGTCATTACAATGTACTGATGAATCATCTTCGCCTGAATCAAAAGTAGACTGGATATTTGAACCATCTGGTAAAATGCCACCAGAACGTAGATTAC]




>consensus_9051#2
TTNNAAATGTCAAAATGATGATTGTACTTCATTAAAAGAAATTGTATTAACTGGTGATAG
ATTATTTTACTTTGCTAATTCAACAAGATATATAGATGAAGGAAGATTTAGATGTCAAGT
TAGTTTACAATTAAAAGAATATAATTTTAAACTTATTGAACATCAAGATGTCATCATTAA
ACGTCAAGCTGCTCCAGCAATTTATAGTAGTGGATCCATTACTTATACAACAAATGATGA
AATGTCATTACAATGTACTGATGAATCATCTTCGCCTGAATCAAAAGTAGACTGGATATT
TGAACCATCTGGTAAAATGCCACCAGAACGTAGATTAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9051#0      ------------------------------------------------------------
consensus_9051#2      TTNNAAATGTCAAAATGATGATTGTACTTCATTAAAAGAAATTGTATTAACTGGTGATAG 60
consensus_9051#1      -----------------CTGAAGATATTAC-TGGTTGGAGAACTAATCAATTACAGTTAA 42
                                                                                  

consensus_9051#0      ---------------------------------GGCTCACGGAACTCTCATG-ATCA--T 24
consensus_9051#2      ATTATTTTACTTTGCTAATTCAACAAGATATATAGATGAAGGAAGATTTAGATGTCAAGT 120
consensus_9051#1      ATAAGTTACGTTTACCAAGT--ACAACTTTATCAGATGAATCAA--TTTATGAAGTACGA 98
                                                        * * *   **   * *      *   

consensus_9051#0      TAACTTATATGTCTCA---TATATATTTAA--TTATGGATTA-----ACTTCTTTTTTAT 74
consensus_9051#2      TAGTTTACAATTAAAAGAATATAATTTTAAACTTATTGAACATCAAGATGTCATCATTAA 180
consensus_9051#1      TGTGTTGCATCTTATA-ATGATACTTATAA--TACATCATCACATCCAT-TCATTATTAA 154
                      *   **  *  *   *    ***  * ***  *     *  *     *  ** *  *** 

consensus_9051#0      TCAAACAGCTGCTCCAGCAATTTATAGTAGTGGATCCATTACTTATACAACAAATGATGA 134
consensus_9051#2      ACGTCAAGCTGCTCCAGCAATTTATAGTAGTGGATCCATTACTTATACAACAAATGATGA 240
consensus_9051#1      TGTGAGAAATAAACCAATGATC-AAATCAATACGTATAGATCGTGTAAAACCA--GATGA 211
                            *  *   ***   **  * *  * *   *  *   * * ** *** *  *****

consensus_9051#0      AATGTCATTACAATGTACTGATGAATC---ATCTTCACCTGAATCAAAAGTAGACTGGAT 191
consensus_9051#2      AATGTCATTACAATGTACTGATGAATC---ATCTTCGCCTGAATCAAAAGTAGACTGGAT 297
consensus_9051#1      ATCTATTCTAGAACCAGCTGATTTACCTAAAGATTCATATGATTCAACACAAGATTATGA 271
                      *       ** **    *****  * *   *  ***   *** **** *  *** *    

consensus_9051#0      ATTTGAACCATCTGGTAAAATGCCACCAGAACGTAGATTAC-CAAAATTATTTGGAAATA 250
consensus_9051#2      ATTTGAACCATCTGGTAAAATGCCACCAGAACGTAGATTAC------------------- 338
consensus_9051#1      ACTTGGATGTAAACCGGAAGTGACTTCAGG-CGAAGCTGTCGCGACATGGTTTAAATGTC 330
                      * *** *          ** ** *  ***  ** ** *  *                   

consensus_9051#0      CATATGCTTATGGAAGAATTTATATATTTGCTATTGCAAGAGGTCAACTAATCCCGGAAC 310
consensus_9051#2      ------------------------------------------------------------
consensus_9051#1      AAAATGATGATTGTACTTCATTAAAAGAAATTGTATTAACTGGTGATGCGGGTACCGAGA 390
                                                                                  

consensus_9051#0      ATTCAGGAAAGTACACATGTATAGCTACAAATCCTTATGGAACAGCTAATAGTTCAATTA 370
consensus_9051#2      ------------------------------------------------------------
consensus_9051#1      ACGA-------------------------------------------------------- 394
                                                                                  

consensus_9051#0      CAGTAACAGTAACTGAAGATCTTTCACGTGGAAAACTTCGTTTTGTTCGAAGAATAATTC 430
consensus_9051#2      ------------------------------------------------------------
consensus_9051#1      ------------------------------------------------------------
                                                                                  

consensus_9051#0      GTCGTGCATTTTCTGGATAAACGATTAATGATGAAAGAAAAAAAGAAAAGAAAGAAAAGA 490
consensus_9051#2      ------------------------------------------------------------
consensus_9051#1      ------------------------------------------------------------
                                                                                  

consensus_9051#0      AAAAGAGAAAAGAAAATAAAGAAAAGAAAAATCCCACATATGACTTAATTGATTATTATT 550
consensus_9051#2      ------------------------------------------------------------
consensus_9051#1      ------------------------------------------------------------
                                                                                  

consensus_9051#0      GATTATTTAGTATTATTATTATTAATCATTGATAGTTATAAACGCACACACACACACCTT 610
consensus_9051#2      ------------------------------------------------------------
consensus_9051#1      ------------------------------------------------------------
                                                                                  

consensus_9051#0      CATATTAGAAATCGATAATTAATGAATGAAATAAGAAAAAAACTACAC 658
consensus_9051#2      ------------------------------------------------
consensus_9051#1      ------------------------------------------------