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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9076#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 847 fasta sequence
[AATCTCGGCACGAGGTCTCGAATCTACGTGTTTCGAAGATGACATTAAATAGCCTGCTGAAATCATTGAATTTCCTGTCGTTATACTAGATTCAGTTACGGGAACACTGATAGATTCATTTCAAAGTTTCGTGAAACCAACAGAAAATCCGGAACTAAGTGTATTCTGTTCTAATTTAACCGGCATTCAACAATGCGATGTAGAAAATGCTCCTACTTTGGCAGTTGTTTTGAGAAAGTTTGAGCATTGGCTTCGAAAAGCCAAAGAAAATTTGGGATGTTCCTTTAAAGGTCAACCAACTTCAGCTATATTCGTAACATGGACTGACTGGGACATAAGTACGTGTTTATGGGATGAATGTAGACGC-AAAAAACTACCTCTTCCTGGCGATATGCTGAATCGTATCGATTTAAAGGCAATATTTCAACAGTGGCTTGGCTCTCATAAAATTGGACAGAAATGGCGAGGTGGTTTAAAGGATGCACTTAATCTAATTGGATTACATTTTGAAGGTCGGCCACACAGAGGAATTGATGATGCTAGAAATACATCTCGACTACTTCTTCATCTACTTTCAAAAAATGTCCTCAATTTCGCCACTTCATAGAAGAGCTCTTTTCTAGATAACTNTACAAACACAAATATATTTTTGATACTCAGTCAATAATTTCTGCCAATTGCGGGAGTATTAATTTGATAGTGAAATTTATGAACCAACATTGTACTGCAGATAAACAATCTGCTATCCGGTTTAAAAAACCTTCCCTAGATTCAACTTGCACTTTTGGGTGAATTGAAATACCTACTGATATTTTTGTCTCAAACAATTTTATAACCGTAATACTGT]
[+] EMBL CD080740 [AATCTCGGCACGAGGTCTCGAATCTACGTGTTTCGAAGATGACATTAAATAGCCTGCTGAAATCATTGAATTTCCTGTCGTTATACTAGATTCAGTTACGGGAACACTGATAGATTCATTTCAAAGTTTCGTGAAACCAACAGAAAATCCGGAACTAAGTGTATTCTGTTCTAATTTAACCGGCATTCAACAATGCGATGTAGAAAATGCTCCTACTTTGGCAGTTGTTTTGAGAAAGTTTGAGCATTGGCTTCGAAAAGCCAAAGAAAATTTGGGATGTTCCTTTAAAGGTCAACCAACTTCAGCTATATTCGTAACATGGACTGACTGGGACATAAGTACGTGTTTATGGGATGAATGTAGACGC AAAAAACTACCTCTTCCTGGCGATATGCTGAATCGTATCGATTTAAAGGCAATATTTCAACAGTGGCTTGGCTCTCATAAAATTGGACAGAAATGGCGAGGTGGTTTAAAGGATGCACTTAATCTAATTGGATTACATTTTGAAGGTCGGCCACACAGAGGAATTGATGATGCTAGAAATACATCTCGACTACTTCTTCATCTACTTTCAAAAAATGTCCTCAATTTCGCCACTTCATAGAAGAGCTCTTTTCTAGATAACTNTACAAACACAAATATATTTTTGATACTCAGTCAATAATTTCTGCCAATTGCGGGAGTAT ]
[-] EMBL CD187239 [ TTCAAAGTTTCGTGAAACCAACAGAAAATCCGGAACTAAGTGTATTCTGTTCTAATTTAACCGGCATTCAACAATGCGATGTAGAAAATGCTCCTACTTTGGCAGTTGTTTTGAGAAAGTTTGAGCATTGGCTTCGAAAAGCCAAAGAAAATTTGGGATGTTCCTTTAAAGGTCAACCAACTTCAGCTATATTCGTAACATGGACTGACTGGGACATAAGTACGTGTTTATGGGATGAATGTAGACGCAAAAAAACTACCTCTTCCTGGCGATATGCTGAATCGTATCGATTTAAAGGCAATATTTCA ]
[-] EMBL CD074664 [ AAGAAAATNTGGGATGTTCCTTTAAAGGTCAACCAACTTCAGCTATATTCGTAACATGGACTGACTGGGACATAAGTACGTGTTTATGGGATGAATGTAGACGC AAAAAACTACCTCTTCCTGGCGATATGCTGAATCGTATCGATTTAAAGGCAATATTTCAACAGTGGCTTGGCTCTCATAAAATTGGACAGAAATGGCGAGGTGGTTTAAAGGATGCACTTAATCTAATTGGATTACATTTTGAAGGTCGGCCACACAGAGGAATTGATGATGCTAGAAATACATCTCGACTACTTCTTCATCTACTTTCAAAAAATGTCCTCAATTTCGCCACTTCATAGAAGAGCTCTTTTCTAGATAACTTTACAAACACAAATATATTTTTGATACTCAGTCAATAATTTCTGCCAATTGC GGAGTAATAATTTGATAGTGAAATTTATGAACCAACATTGTACTGCAGATAAACAATCTGCTATCCGGTTTAAAAAACCTTCCCTAGATTCAACTTGCACTTTTGGGTGAATTGAAATACCTACTGATATTTTTGTCTCAAACAATTTTATAACCGTAATACTGT]
[+] EMBL CD194562 [ TACCTCTTCCTGGCGATATGCTGAATCGTATCGATTTAAAGGCAATATTTCAACAGTGGCTTGGCTCTCATAAAATTGGACAGAAATGGCGAGGTGGTTTAAAGGATGCACTTAATCTAATTGGATTACATTTTGAAGGTCGGCCACACAGAGGAATTGATGATGCTAGAAATACATCTCGACTACTTCTTCATCTACTTTCAAAAAATGTCC ]
consensusID : consensus_9076#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 576 fasta sequence
[CGACGACAGACAACGCTAGTGCGTCTCTGCGCTTTCAGTCACATTCATAACTGAGTAACACTTTCGAATAATGCAAAAGACTATCAATGAGGCCAAAAGGATTGGTGCATTCTATGACTTCAATACGTTTGCACAAAATAGTCTTACGAATAACTTCGAACCTACGTGTTTCGAAGATGACATTAAAAAGCCTGCTGAAATCATTGAATTTCCTGTCGTTATACTAGATTCAGTTACGGGAACACTGATAGATTCATTTCAAAGTTTCGTGAAACCAACAGAAAATCCGGAACTAAGTGTATTCTGTTCTAATTTAACCGGCATTCAACAATGCGATGTAGAAAATGCTCCTACTTTGGCAGTTGTTTTGAGAAAGTTTGAGCATTGGCTTCGAAAAGCCAAAGAAAATTTGGGATGTTCCTTTAAAGGTCAACCAACTTCAGCTATATTCGTAACATGGACTGACTGNGACATAAGTACGTGTTTATGGGATGAATGTAGACGCAAAAAACTACCTCTTCCTGGCGATATGCTGAATCGTATCGATTTAAAGGCAATATTTCAACAGCGAAGGTA]
[+] EMBL CD145467 [CGACGACAGACAACGCTAGTGCGTCTCTGCGCTTTCAGTCACATTCATAACTGAGTAACACTTTCGAATAATGCAAAAGACTATCAATGAGGCCAAAAGGATTGGTGCATTCTATGACTTCAATACGTTTGCACAAAATAGTCTTACGAATAACTTCGAACCTACGTGTTTCGAAGATGACATTAAAAAGCCTGCTGAAATCATTGAATTTCCTGTCGTTATACTAGATTCAGTTACGGGAACACTGATAGATTCATTTCAAAGTTTCGTGAAACCAACAGAAAATCCGGAACTAAGTGTATTCTGTTCTAATTTAACCGGCATTCAACAATGCGATGTAGAAAATGCTCCTACTTTGGCAGTTGTTTTGAGAAAGTTTGAGCATTGGCTTCGAAAAGCCAAAGAAAATTTGGGATGTTCCTTTAAAGGTCAACCAACTTCAGCTATATTCGTAACATGGACTGACTGNGACATAAGTACGTGTTTATGGGATGAATGTAGACGCAAAAAACTACCTCTTCCTGGCGATATGCTGAATCGTATCGATTTAA ]
[-] EMBL CD189572 [ GACGACAGACAACGCTAGTGCGTCTCTGCGCTNTCAGTCACATTCATAACTGAGTAACACTTTCGAATAATGCAAAAGACTATCAATGAGGCCAAAAGGATTGGTGCATTCTATGACTTCAATACGTTTGCACAAAATAGTCTTACGAATAACTTCGAACCTACGTGTTTCGAAGATGACATTAAAAAGCCTGCTGAAATCATTGAATTTCCTGTCGTTATACTAGATTCAGTTACGGGAACACTGATAGATTCATTTCAAAGTTTCGTGAAACCAACAGAAAATCCGGAACTAAGTGTATTCTGTTCTAATTTAACCGGCATTCAACAATGCGATGTAGAAAATGCTCCTACTTTGGCAGTTGTTTTGAGAAAGTTTGAGCATTGGCTTCGAAAAGCCAAAGAAAATTTGGGATGTTCCTTTAAAGGTCAACCAACTTCAGCTATATTCGTAACATGGACTGACTGGGACATAAGTACGTGTTTATGGGATGAATGTAGACGCAAAAAACTACCTCTTCCTGGCGATATGCTGAATCGTATCGATTTAAAGGCAATATTTCAACAGCGAAGGTA]
consensusID : consensus_9076#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 367 fasta sequence
[TGCATTCTATGACTTCAATACGTTTGCACAAAATAGTCTTACGAATAATTTACGTTGGTTTTTTATCCTAGACTTCGAATCTACGTGTTTCGAAGATGACATTAAAAAGCCTGCTGAAATCATTGAATTTCCTGTCGTTATACTAGATTCAGTTACGGGAACACTGATAGATTCATTTCAAAGTTTCGTGAAACCAACAGAAAATCCGGAACTAAGTGTATTCTGTTCTAATTTAACCGGCATTCAACAATGCGATGTAGAAAATGCTCCTACTTTGGCAGTTGTTTTGAGAAAGTTTGAGCATTGGCTTCGAAAAGCCAAAGAAAATTTGGGATGTTCCTTTAAAGGTCAACCAACTTCAGCTATA]
[-] EMBL CD097309 [TGCATTCTATGACTTCAATACGTTTGCACAAAATAGTCTTACGAATAATTTACGTTGGTTTTTTATCCTAGACTTCGAATCTACGTGTTTCGAAGATGACATTAAAAAGCCTGCTGAAATCATTGAATTTCCTGTCGTTATACTAGATTCAGTTACGGGAACACTGATAGATTCATTTCAAAGTTTCGTGAAACCAACAGAAAATCCGGAACTAAGTGTATTCTGTTCTAATTTAACCGGCATTCAACAATGCGATGTAGAAAATGCTCCTACTTTGGCAGTTGTTTTGAGAAAGTTTGAGCATTGGCTTCGAAAAGCCAAAGAAAATTTGGGATGTTCCTTTAAAGGTCAACCAACTTCAGCTATA]
consensusID : consensus_9076#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 337 fasta sequence
[TTTCAAAGTTTCGTGAAACCAACAGAAAATCCGGAACTAAGTGTATTCTGTTCTAATTTAACCGGCATTCAACAAGTATGCGTACAAATGGTAGATGTCAATATTTTTCCTAGTGCGATGTAGAAAATGCTCCTACTTTGGCAGTTGTTTTGAGAAAGTTTGAGCATTGGCTTCGAAAAGCCAAAGAAAATTTGGGATGTTCCTTTAAAGGTCAACCAACTTCAGCTGTATTCGTAACATGGACTGACTGGGACATAAGTACGTGTCTATGGGATGAATGTAGACGCAAAAAACTACCTCTTCCTGGCGATATGCTGAATCGTATCGATTTAAAGGC]
[+] EMBL CD186774 [TTTCAAAGTTTCGTGAAACCAACAGAAAATCCGGAACTAAGTGTATTCTGTTCTAATTTAACCGGCATTCAACAAGTATGCGTACAAATGGTAGATGTCAATATTTTTCCTAGTGCGATGTAGAAAATGCTCCTACTTTGGCAGTTGTTTTGAGAAAGTTTGAGCATTGGCTTCGAAAAGCCAAAGAAAATTTGGGATGTTCCTTTAAAGGTCAACCAACTTCAGCTGTATTCGTAACATGGACTGACTGGGACATAAGTACGTGTCTATGGGATGAATGTAGACGCAAAAAACTACCTCTTCCTGGCGATATGCTGAATCGTATCGATTTAAAGGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9076#0 ------------------------------------------------------------
consensus_9076#3 ------------------------------------------------------------
consensus_9076#1 CGACGACAGACAACGCTAGTGCGTCTCTGCGCTTTCAGTCACATTCATAACTGAGTAACA 60
consensus_9076#2 ------------------------------------------------------------
consensus_9076#0 ------------------------------------------------------------
consensus_9076#3 ------------------------------------------------------------
consensus_9076#1 CTTTCGAATAATGCAAAAGACTATCAATGAGGCCAAAAGGATTGGTGCATTCTATGACTT 120
consensus_9076#2 ---------------------------------------------TGCATTCTATGACTT 15
consensus_9076#0 ------------------------------------------AATCTCGGCACGAGGTCT 18
consensus_9076#3 ------------------------------------------------------------
consensus_9076#1 CAATACGTTTGCACAAAATAGTCTTACGAATAA------------------------CTT 156
consensus_9076#2 CAATACGTTTGCACAAAATAGTCTTACGAATAATTTACGTTGGTTTTTTATCCTAGACTT 75
consensus_9076#0 CGAATCTACGTGTTTCGAAGATGACATTAAATAGCCTGCTGAAATCATTGAATTTCCTGT 78
consensus_9076#3 ------------------------------------------------------------
consensus_9076#1 CGAACCTACGTGTTTCGAAGATGACATTAAAAAGCCTGCTGAAATCATTGAATTTCCTGT 216
consensus_9076#2 CGAATCTACGTGTTTCGAAGATGACATTAAAAAGCCTGCTGAAATCATTGAATTTCCTGT 135
consensus_9076#0 CGTTATACTAGATTCAGTTACGGGAACACTGATAGATTCATTTCAAAGTTTCGTGAAACC 138
consensus_9076#3 ----------------------------------------TTTCAAAGTTTCGTGAAACC 20
consensus_9076#1 CGTTATACTAGATTCAGTTACGGGAACACTGATAGATTCATTTCAAAGTTTCGTGAAACC 276
consensus_9076#2 CGTTATACTAGATTCAGTTACGGGAACACTGATAGATTCATTTCAAAGTTTCGTGAAACC 195
********************
consensus_9076#0 AACAGAAAATCCGGAACTAAGTGTATTCTGTTCTAATTTAACCGGCATTCAACAA----- 193
consensus_9076#3 AACAGAAAATCCGGAACTAAGTGTATTCTGTTCTAATTTAACCGGCATTCAACAAGTATG 80
consensus_9076#1 AACAGAAAATCCGGAACTAAGTGTATTCTGTTCTAATTTAACCGGCATTCAACAA----- 331
consensus_9076#2 AACAGAAAATCCGGAACTAAGTGTATTCTGTTCTAATTTAACCGGCATTCAACAA----- 250
*******************************************************
consensus_9076#0 ---------------------------------TGCGATGTAGAAAATGCTCCTACTTTG 220
consensus_9076#3 CGTACAAATGGTAGATGTCAATATTTTTCCTAGTGCGATGTAGAAAATGCTCCTACTTTG 140
consensus_9076#1 ---------------------------------TGCGATGTAGAAAATGCTCCTACTTTG 358
consensus_9076#2 ---------------------------------TGCGATGTAGAAAATGCTCCTACTTTG 277
***************************
consensus_9076#0 GCAGTTGTTTTGAGAAAGTTTGAGCATTGGCTTCGAAAAGCCAAAGAAAATTTGGGATGT 280
consensus_9076#3 GCAGTTGTTTTGAGAAAGTTTGAGCATTGGCTTCGAAAAGCCAAAGAAAATTTGGGATGT 200
consensus_9076#1 GCAGTTGTTTTGAGAAAGTTTGAGCATTGGCTTCGAAAAGCCAAAGAAAATTTGGGATGT 418
consensus_9076#2 GCAGTTGTTTTGAGAAAGTTTGAGCATTGGCTTCGAAAAGCCAAAGAAAATTTGGGATGT 337
************************************************************
consensus_9076#0 TCCTTTAAAGGTCAACCAACTTCAGCTATATTCGTAACATGGACTGACTGGGACATAAGT 340
consensus_9076#3 TCCTTTAAAGGTCAACCAACTTCAGCTGTATTCGTAACATGGACTGACTGGGACATAAGT 260
consensus_9076#1 TCCTTTAAAGGTCAACCAACTTCAGCTATATTCGTAACATGGACTGACTGNGACATAAGT 478
consensus_9076#2 TCCTTTAAAGGTCAACCAACTTCAGCTATA------------------------------ 367
*************************** **
consensus_9076#0 ACGTGTTTATGGGATGAATGTAGACGCAAAAAACTACCTCTTCCTGGCGATATGCTGAAT 400
consensus_9076#3 ACGTGTCTATGGGATGAATGTAGACGCAAAAAACTACCTCTTCCTGGCGATATGCTGAAT 320
consensus_9076#1 ACGTGTTTATGGGATGAATGTAGACGCAAAAAACTACCTCTTCCTGGCGATATGCTGAAT 538
consensus_9076#2 ------------------------------------------------------------
consensus_9076#0 CGTATCGATTTAAAGGCAATATTTCAACAGTGGCTTGGCTCTCATAAAATTGGACAGAAA 460
consensus_9076#3 CGTATCGATTTAAAGGC------------------------------------------- 337
consensus_9076#1 CGTATCGATTTAAAGGCAATATTTCAACAGCGAAGGTA---------------------- 576
consensus_9076#2 ------------------------------------------------------------
consensus_9076#0 TGGCGAGGTGGTTTAAAGGATGCACTTAATCTAATTGGATTACATTTTGAAGGTCGGCCA 520
consensus_9076#3 ------------------------------------------------------------
consensus_9076#1 ------------------------------------------------------------
consensus_9076#2 ------------------------------------------------------------
consensus_9076#0 CACAGAGGAATTGATGATGCTAGAAATACATCTCGACTACTTCTTCATCTACTTTCAAAA 580
consensus_9076#3 ------------------------------------------------------------
consensus_9076#1 ------------------------------------------------------------
consensus_9076#2 ------------------------------------------------------------
consensus_9076#0 AATGTCCTCAATTTCGCCACTTCATAGAAGAGCTCTTTTCTAGATAACTNTACAAACACA 640
consensus_9076#3 ------------------------------------------------------------
consensus_9076#1 ------------------------------------------------------------
consensus_9076#2 ------------------------------------------------------------
consensus_9076#0 AATATATTTTTGATACTCAGTCAATAATTTCTGCCAATTGCGGGAGTATTAATTTGATAG 700
consensus_9076#3 ------------------------------------------------------------
consensus_9076#1 ------------------------------------------------------------
consensus_9076#2 ------------------------------------------------------------
consensus_9076#0 TGAAATTTATGAACCAACATTGTACTGCAGATAAACAATCTGCTATCCGGTTTAAAAAAC 760
consensus_9076#3 ------------------------------------------------------------
consensus_9076#1 ------------------------------------------------------------
consensus_9076#2 ------------------------------------------------------------
consensus_9076#0 CTTCCCTAGATTCAACTTGCACTTTTGGGTGAATTGAAATACCTACTGATATTTTTGTCT 820
consensus_9076#3 ------------------------------------------------------------
consensus_9076#1 ------------------------------------------------------------
consensus_9076#2 ------------------------------------------------------------
consensus_9076#0 CAAACAATTTTATAACCGTAATACTGT 847
consensus_9076#3 ---------------------------
consensus_9076#1 ---------------------------
consensus_9076#2 ---------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||