cluster # 9085

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Schistosoma mansoni
cluster # 9085 cluster # 9085 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9085#0 length = 660 sequences # 3

consensus_9085#1 length = 579 sequences # 5

consensusID : consensus_9085#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 660
fasta sequence

                              [CTCGAGGGCCANAATTCGGCACGAGGGTGGTTTCAGCAATGCTGTTTGTCGTATCCTAGAAATGCATGGAATTCTAGAAAAAGCAAGTAAAGGAGATGATCCAGAATTGTTCGCGTCGTATGATGTCTTAGAGAATGAAGAGCTACGAGCTGCTGCTAAAGTGTTTGCTGACTGGCCAACTTTCCCTCAGTTATATTTTGACGGTGAATTTATTGGTGGTTGTGATATTCTTCTAGATATGCATCGTTCTGGGAAACTTACAGAAGAACTAGAACGTCTCGGTATTGGTTCTGCTTTAGCAAAAGTATCAGACAAAGAGAAAACATGATTGATTATCTTTTGATACTTTGAATTTGTACAGTATCCCTATTTTCTGTTTGATAAAAATGTGTTATACTGTAGCACTGATGTTTAGTCTTAATTTTACCCATAACACTTAGTTGGTATCTTTTTATGATTGTTTTAGGTTTTCATCTGCAATTTTTGAATTTTAACAAACCATTATTCGACGAAATGCAGTAGCCATGTATTATAACGAATGATATTATATTTTGTTGTTTAAGCTATTGTGAAGATTCCGTTAGACCAAGCACAGCTTACCTGCATATTCTAAAAAAGCAATATCATCATAACATTATAAATTTTTCACAATTAAAGATT]

[+] EMBL CD083065             [CTCGAGGGCCANAATTCGGCACGAGGGTGGTTTCAGCAATGCTGTTTGTCGTATCCTAGAAATGCATGGAATTCTAGAAAAAGCAAGTAAAGGAGATGATCCAGAATTGTTCGCGTCGTATGATGTCTTAGAGAATGAAGAGCTACGAGCTGCTGCTAAAGTGTTTGCTGACTGGCCAACTTTCCCTCAGTTATATTTTGACGGTGAATTTATTGGTGGTTGTGATATTCTTCTAGATATGCATCGTTCTGGGAAACTTACAGAAGAACTAGAACGTCTCGGTATTGGTTCTGCTTTAGCAAAAGTATCAGACAAAGAGAAAACATGATTGATTATCTTTTGATACTTTGAATTTGTACAGTATCCCTATTTTCTGTTTGATAAAAATGTGTTATACTGTAGCACTGATGTTTAGTCTTAATTTTACCCATAACACTTAGTTGGTATCTTTTTATGATTGTTTTAGGTTTTCATCTGCAATTTTTGAATTTTAACAAACCATTATTCGACGAAATGCAGTAGCCATGTATTATAACGAATGATATTATATTTTGTTGTTTAAGCTATTGTGAAGATTCCGTTAGACCAAGCACAGCTTACCTGCATATTCTAAAAAAGC ATATCATCATAACATTATAAAATTTTCACAATTAAAG   ]
[-] EMBL CD076535             [                                                     TCCTAGAAATGCATGGAATTCTAGAAAAAGCAAGTAAAGGAGATGATCCAGAATTGTTCGCGTCGTATGATGTCTTAGAGAATGAAGAGCTACGAGCTGCTGCTAAAGTGTTTGCTGACTGGCCAACTTTCCCTCAGTTATATTTTGACGGTGAATTTATTGGTGGTTGTGATATTCTTCTAGATATGCATCGTTCTGGGAAACTTACAGAAGAACTAGAACGTCTCGGTATTGGTTCTGCTTTAGCAAAAGTATCAGACAAAGAGAAAACATGATTGATTATCTTTTGATACTTTGAATTTGTACAGTATCCCTATTTTCTGTTTGATAAAAATGTGTTATACTGTAGCACTGATGTTTAGTCTTAATTTTACCCATAACACTTAGTTGGTATCTTTTTATGATTGTTTTAGGTTTTCATCTGCAATTTTTGAATTTTAACAAACCATTATTCGACGAAATGCAGTAGCCATGTATTATAACGAATGATATTATATTTTGTTGTTTAAGCTATTGTGAAGATTCCGTTAGACCAAGCACAGCTTACCTGCATATTCT AAAAAGCAATATCATCATAACATTATAAATTTTTCACAATTAAAGATT]
[-] EMBL CD076638             [                                                                                                                                                                       CTGACTGGCCAACTTTCCCTCAGTTATATTTTGACGGTGAATTTATTGGTGGTTGTGATATTCTTCTAGATATGCATCGTTCTGGGAAACTTACAGAAGAACTAGAACGTCTCGGTATTGGTTCTGCTTTAGCAAAAGTATCAGACAAAGAGAAAACATGATTGATTATCTTTTGATACTTTGAATTTGTACAGTATCCCTATTTTCTGTTTGATAAAAATGTGTTATACTGTAGCACTGATGTTTAGTCTTAATTTTACCCATAACACTTAGTTGGTATCTTTTTATGATTGTTTTAGGTTTTCATCTGCAATTTTTGAATTTTAACAAACCATTATTCGACGAAATGCAGTAGCCATGTATTATAACGAATGATATTATATTTTGTTGTTTAAGCTATTGTGAAGATTCCGTTAGACCAAGCACAGCTTACCTGCATATT TTAAAAAGCAATATCATCATAACATTATAAATTTTTCACAATTAAAGA  ]




>consensus_9085#0
CTCGAGGGCCANAATTCGGCACGAGGGTGGTTTCAGCAATGCTGTTTGTCGTATCCTAGA
AATGCATGGAATTCTAGAAAAAGCAAGTAAAGGAGATGATCCAGAATTGTTCGCGTCGTA
TGATGTCTTAGAGAATGAAGAGCTACGAGCTGCTGCTAAAGTGTTTGCTGACTGGCCAAC
TTTCCCTCAGTTATATTTTGACGGTGAATTTATTGGTGGTTGTGATATTCTTCTAGATAT
GCATCGTTCTGGGAAACTTACAGAAGAACTAGAACGTCTCGGTATTGGTTCTGCTTTAGC
AAAAGTATCAGACAAAGAGAAAACATGATTGATTATCTTTTGATACTTTGAATTTGTACA
GTATCCCTATTTTCTGTTTGATAAAAATGTGTTATACTGTAGCACTGATGTTTAGTCTTA
ATTTTACCCATAACACTTAGTTGGTATCTTTTTATGATTGTTTTAGGTTTTCATCTGCAA
TTTTTGAATTTTAACAAACCATTATTCGACGAAATGCAGTAGCCATGTATTATAACGAAT
GATATTATATTTTGTTGTTTAAGCTATTGTGAAGATTCCGTTAGACCAAGCACAGCTTAC
CTGCATATTCTAAAAAAGCAATATCATCATAACATTATAAATTTTTCACAATTAAAGATT

consensusID : consensus_9085#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 579
fasta sequence

                              [ATTTGGTGAAAGGAAGTCGTATTGTGCTTTTTATGAAAGGGAATCCAAATGAACCACGATGTGGTTTCAGCAATGCTGTTTGTCGTATCCTAGAAATGCATGGAATTCTAGAAAAAGCAAGTAAAGGAGATGATCCAGAATTGTTCGCGTCGTATGATGTCTTAGAGAATGAAGAGCTACGAGCTGCTGCTAAAGTGTTTGCTGACTGGCCAACTTTCCCTCAGTTATATTTTGACGGTGAATTTATTGGTGGTTGTGATATTCTTCTAGATATGCATCGTTCTGGGAAACTTACAGAAGAACTAGAACGTCTCGGTATTGGTTCTGCTTTAGCAAAAGTATCAGACAAAGAGAAAACATGATTGATTATCTTTTGATACTTTGAATTTGTACAGTATCCCTATTTTCTGTTTGATAAAAATGTGTTATACTGTAGCACTGATGTTTAGTCTTAATTTTACCCATAACACTTAGTTGGTATCTTTTTATGATTGTTTTAGGTTTTCATCTGCAATTTTTGAATTNTAACAAACCATTATTCGACGAAATGCAGTAGCCATGTATTANTACGAATGATAT]

[+] EMBL CD082949             [ATTTGGTGAAAGGAAGTCGTATTGTGCTTTTTATGAAAGGGAATCCAAATGAACCACGATGTGGTTTCAGCAATGCTGTTTGTCGTATCCTAGAAATGCATGGAATTCTAGAAAAAGCAAGTAAAGGAGATGATCCAGAATTGTTCGCGTCGTATGATGTCTTAGAGAATGAAGAGCTACGAGCTGCTGCTAAAGTGTTTGCTGACTGGCCAACTTTCCCTCAGTTATATTTTGACGGTGAATTTATTGGTGGTTGTGATATTCTTCTAGATATGCATCGTTCTGGGAAACTTACAGAAGAACTAGAACGTCTCGGTATTGGTTCTGCTTTAGCAAAAGTATCAGACAAAGAGAAAACATGATTGATTATCTTTTGATACTTTGAATTTGTACAGTATCCCTATTTTCTGTTTGATAAAAATGTGTTATACTGTAGCACTGATGTTTAGTCTTAATTTTACCCATAACACTTAGTTGGTATCTTTTTATGATTGTTTTAGGTTTTCATCTGCAATTTTTGAATTNTAACAAACCATTATTCGACGAAATGCAGTAGCCATGTATTANTACGAATGATAT]
[+] EMBL CD125571             [                                                                                                                                                                                                       TGCTGACTGGCCAACTTTCCCTCAGTTATATTTGGACGGTGAATTTATTGGTGGTTGTGATATTCTTCTAGATATGCATCGTTCTGGGAAACTTACAGAAAAACTAGAACGTCTCGGTATTGGTTCTGCTTTAGCAAAAGTATCAGACAAAGAGAAAACATGATTGATTATCTTTTGATACTTTGAATCTGTACAGTATCCCTATTTTCTGTTTGATAAAAAT                                                                                                                                                             ]
[-] EMBL CD139067             [                                                                                                                                                                                                        GCTGACTGGCCAACTTTCCCTCAGTTATATTTTGACGGTGAATTTATTGGTGGTTGTGATATTCTTCTAGATATGCATCGTTCTGGGAAACTTACAGAAGAACTAGAACGTCTCGGTATTGGTTCTGCTTTAGCAAAAGTATCAGACAAAGAGAAAACATGATTGATTATCTTTTGATACTTTGAATTTGTACAGTATCCCTATTTTCTGTTTGATAAAAATG                                                                                                                                                            ]
[-] EMBL CD125522             [                                                                                                                                                                                                        GCTGACTGGCCAACTTTCCCTCAGTTATATTTTGACGGCGAATTTATTGGTGGTTGTGATATTCTTCTAGATATGCATCGTTCTGGGAAACTTACAGAAGAACTAGAACGTCTCGGTATTGGTTCTGCTTTAGCAAAAGTATCAGACAAAGAGAAAACATGATTGATTATCTTTTGATACTTTGAATTTGTACAGTATCCCTATTTTCTGTTTGATAAAAATG                                                                                                                                                            ]
[+] EMBL CD130255             [                                                                                                                                                                                                          TGACTGGCCAACTTTCCCTCAGTTATATTTTGACGGTGAATTTATTGGTGGTTGTGATATTCTTCTAGATATGCATCGTTCTGGGAAACTTACAGAAGAACTAGAACGTCTCGGTATTGGTTCTGCTTTAGCAAAAGTATCAGACAAAGAGAAAACATGATTGATTATCTTTTGAT                                                                                                                                                                                                         ]




>consensus_9085#1
ATTTGGTGAAAGGAAGTCGTATTGTGCTTTTTATGAAAGGGAATCCAAATGAACCACGAT
GTGGTTTCAGCAATGCTGTTTGTCGTATCCTAGAAATGCATGGAATTCTAGAAAAAGCAA
GTAAAGGAGATGATCCAGAATTGTTCGCGTCGTATGATGTCTTAGAGAATGAAGAGCTAC
GAGCTGCTGCTAAAGTGTTTGCTGACTGGCCAACTTTCCCTCAGTTATATTTTGACGGTG
AATTTATTGGTGGTTGTGATATTCTTCTAGATATGCATCGTTCTGGGAAACTTACAGAAG
AACTAGAACGTCTCGGTATTGGTTCTGCTTTAGCAAAAGTATCAGACAAAGAGAAAACAT
GATTGATTATCTTTTGATACTTTGAATTTGTACAGTATCCCTATTTTCTGTTTGATAAAA
ATGTGTTATACTGTAGCACTGATGTTTAGTCTTAATTTTACCCATAACACTTAGTTGGTA
TCTTTTTATGATTGTTTTAGGTTTTCATCTGCAATTTTTGAATTNTAACAAACCATTATT
CGACGAAATGCAGTAGCCATGTATTANTACGAATGATAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9085#0      -----------------------------------CTCGAGGGCCANAATTCGGCACGAG 25
consensus_9085#1      ATTTGGTGAAAGGAAGTCGTATTGTGCTTTTTATGAAAGGGAATCCAAATGAACCACGAT 60
                                                            * *   *  ***    ***** 

consensus_9085#0      GGTGGTTTCAGCAATGCTGTTTGTCGTATCCTAGAAATGCATGGAATTCTAGAAAAAGCA 85
consensus_9085#1      G-TGGTTTCAGCAATGCTGTTTGTCGTATCCTAGAAATGCATGGAATTCTAGAAAAAGCA 119
                      * **********************************************************

consensus_9085#0      AGTAAAGGAGATGATCCAGAATTGTTCGCGTCGTATGATGTCTTAGAGAATGAAGAGCTA 145
consensus_9085#1      AGTAAAGGAGATGATCCAGAATTGTTCGCGTCGTATGATGTCTTAGAGAATGAAGAGCTA 179
                      ************************************************************

consensus_9085#0      CGAGCTGCTGCTAAAGTGTTTGCTGACTGGCCAACTTTCCCTCAGTTATATTTTGACGGT 205
consensus_9085#1      CGAGCTGCTGCTAAAGTGTTTGCTGACTGGCCAACTTTCCCTCAGTTATATTTTGACGGT 239
                      ************************************************************

consensus_9085#0      GAATTTATTGGTGGTTGTGATATTCTTCTAGATATGCATCGTTCTGGGAAACTTACAGAA 265
consensus_9085#1      GAATTTATTGGTGGTTGTGATATTCTTCTAGATATGCATCGTTCTGGGAAACTTACAGAA 299
                      ************************************************************

consensus_9085#0      GAACTAGAACGTCTCGGTATTGGTTCTGCTTTAGCAAAAGTATCAGACAAAGAGAAAACA 325
consensus_9085#1      GAACTAGAACGTCTCGGTATTGGTTCTGCTTTAGCAAAAGTATCAGACAAAGAGAAAACA 359
                      ************************************************************

consensus_9085#0      TGATTGATTATCTTTTGATACTTTGAATTTGTACAGTATCCCTATTTTCTGTTTGATAAA 385
consensus_9085#1      TGATTGATTATCTTTTGATACTTTGAATTTGTACAGTATCCCTATTTTCTGTTTGATAAA 419
                      ************************************************************

consensus_9085#0      AATGTGTTATACTGTAGCACTGATGTTTAGTCTTAATTTTACCCATAACACTTAGTTGGT 445
consensus_9085#1      AATGTGTTATACTGTAGCACTGATGTTTAGTCTTAATTTTACCCATAACACTTAGTTGGT 479
                      ************************************************************

consensus_9085#0      ATCTTTTTATGATTGTTTTAGGTTTTCATCTGCAATTTTTGAATTTTAACAAACCATTAT 505
consensus_9085#1      ATCTTTTTATGATTGTTTTAGGTTTTCATCTGCAATTTTTGAATTNTAACAAACCATTAT 539
                      ********************************************* **************

consensus_9085#0      TCGACGAAATGCAGTAGCCATGTATTATAACGAATGATATTATATTTTGTTGTTTAAGCT 565
consensus_9085#1      TCGACGAAATGCAGTAGCCATGTATTANTACGAATGATAT-------------------- 579
                      ***************************  ***********                    

consensus_9085#0      ATTGTGAAGATTCCGTTAGACCAAGCACAGCTTACCTGCATATTCTAAAAAAGCAATATC 625
consensus_9085#1      ------------------------------------------------------------
                                                                                  

consensus_9085#0      ATCATAACATTATAAATTTTTCACAATTAAAGATT 660
consensus_9085#1      -----------------------------------