cluster # 9105

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Schistosoma mansoni
cluster # 9105 cluster # 9105 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9105#0 length = 549 sequences # 7

consensus_9105#1 length = 346 sequences # 1

consensusID : consensus_9105#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 549
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTCCTTAAAAATATTAACTGATATTTTATATAACAATGTCAAACAAAATAATTGGGTTTGTCAATATTCACAAAATAGTAGACAGTACATTTGGATATACAATTAGTGGTTTTCTTATTTACCACGAAATCCTCCACCACGGCCAGGACCACCAGGCACACTCCCGCCACGCCCTGCTCCTCCACGACCTCGATTATTAGGGGCGTTACCACCTCGACCTCTAGCCTTATTTCTATGAAAACCCCCACGCCCAGTATCTGCAGACTGAGAACGATTACGCATTTTGGCCAGCTGCAA-GTCCTCTTTAACCTTATCAATTACGTCGTCTGGAATCCGTAAGTATTTTATT-ATGCTTCC-ACG-AATATAACACTCCGGCATTT-TCC-AGAA-GCGATCCCCATCTCGAGATGTACAAATAACTTCTTTAAGATGAATGTTCATCCAGTCATCGCCAGGCGACAAGGTGGCCGTTATAAGTTCTCACCACTTTTCAATTCACCGAGAATATGAAAATCCGTTGCACCCTTGAGGGATG]

[+] EMBL AI395646             [TTTTTTTTTTTTTTTTTTTCCTTAAAAATATTAACTGATATTTTATATAACAATGTCAAACAAAATAATTGGGTTTGTCAATATTCACAAAATAGTAGACAGTACATTTGGATATACAATTAGTGGTTTTCTTATTTACCACGAAATCCTCCACCACGGCCAGGACCACCAGGCACACTCCCGCCACGCCCTGCTCCTCCACGACCTCGATTATTAGGGGCGTTACCACCTCGACCTCTATCCTTATTTCTATGAAAACCCCCACGCCCAGTATCTGCAGACTGAGAACGATTACGCATTTTGGCCAGCTGCAA GTCCTCTTTAACCTTATCAATTACGTCGTCGGGAATCCGTAAGTATTTTATT ATGCTTCC ACG AATAAAACACTCCCGGATTT TCCTAAAA GCGATCCCCACCTCGAGAAGTAAACATAACTTCTTTAAGATGAATGTGCATCCAGGCCACGCCAGGCGAAAGGGTGGGCGTTATAAGTTCAAACAACTTTTCAATTAACCGAGAATATGAAAATCCGTTGCACCCTTGAGGGATG]
[-] EMBL CD135121             [                                                                                                                                                                    ACCACCAGGCACACTCCCGTCACGCCCTGCTCCTCCACGACCTCGATTATTAGGGGCGTTACCACCTCGACCTCTAGCCTTATTTCTATGTGTACAACCACGGCCAGTATCTGCAGACTGAGATCGATTACGCATTTTGGCCAGCTGCAATGTGCTCGTTAACCTTATCAATTACGTCGTCTGGAATCCGTAAGTATTTTATTCATGCTTCCTACGTAATATAACACTCCGGCATTTCTCC AGAATGCGATTCGCATCTCGAGATGTACAAATAtgttact                                                                                                              ]
[+] EMBL CD144405             [                                                                                                                                                                                                 CTCCTCCACGACCTCGATTATTAGGGGCGTTACCACCTCGACCTCTAGCCTTATTTCTATGAAAACCCCCACGCCCAGTATCTGCAGACTGAGAACGATTACGCATTTTGGCCAGCTGCAA GTCCTCTTTAACCTTATCAATTACGTCGTCTGGAATCCGTAAGTATTTTATT ATGCTTCC ACG AATATAACACTCCGGCATTT TCC AGAA GCGATCCCCATCTCGAGATGTACAAATAACTTCTTTAAGATGAATGTT                                                                                                 ]
[+] EMBL CD141111             [                                                                                                                                                                                                                 ATTATTAGGGGCGTTACCACCTCGACCTCTAGCCTTATTTCTATGAAAACCCCTACGCCCAGTATCTGCAGACTGAGAACGATTACGCATTTTGGCCAGCTGCAA GTCCTCTTTAACCTTATCAATTACGTCGTCTGGAATCCGTAAGTATTTTATT ATGCTTCC ACG AATATAACACTCCGGCATTT TCC AGAA GCGATCCCCATCTCGAGATGTACAAATAACTTCTTTAAGATGAATGTTCATCCAGTCATCG CAAGCGACAAGGTGGCCGTTATAAG TCTCACCACTTTTCTATTC                                      ]
[-] EMBL CD135256             [                                                                                                                                                                                                                    ATTAGGGGCGTTACCACCTCGACCTCTAGCCTTATTTCTATGAAAACCCCCACGCCCAGTATCTGCAGACTGAGAACGATTACGCATTTTGGCCAGCTGCAA GTCCTCTTTAACCTTATCAATTACGTCGTCTGGAATCCGTAAGTATTTTATT ATGCTTCC ACG AATATAACACTCCGGCATTT TCC AGAA GCGATCCCCATCTCGAGATGTACAAATAACTTCTTTAAGATGAATGTTCATCCAGT                                                                                         ]
[-] EMBL CD146653             [                                                                                                                                                                                                                                                  CTTATTTCTATGAAAACCCCCACGCCCAGTATCTGCAGACTGAGAACGATTACGCATTTTGGCCAGCTGCAA GTCCTCTTTAACCTTATCAATTACGTCGTCTGGAATCCGTAAGTATTTTATT ATGCTTCC ACG AATATAACACTCCGGCATTT TCC AGAA GCGATCCCCATCTCGAGATGTACAAATAACTTCTTTAAGATGAATGTTCATCCAGTCATCG CAAGCGACAAGGTGGCCGTTATAAGTT TCACCACTTTTCAATTCAACGAGCATAGGAAGATTCGT                 ]
[-] EMBL BG932839             [                                                                                                                                                                                                                                                                                                                                                                         TTTATT ATGCTTCC ACG AATATAACACTCCGGCATTT TCC AGAA GCGATCCCCATCTCGAGATGTACAAATAACTTCTCTAAGATGAATGTTCATCCAGTCATCGCAAGc                                                                               ]




>consensus_9105#0
TTTTTTTTTTTTTTTTTTTCCTTAAAAATATTAACTGATATTTTATATAACAATGTCAAA
CAAAATAATTGGGTTTGTCAATATTCACAAAATAGTAGACAGTACATTTGGATATACAAT
TAGTGGTTTTCTTATTTACCACGAAATCCTCCACCACGGCCAGGACCACCAGGCACACTC
CCGCCACGCCCTGCTCCTCCACGACCTCGATTATTAGGGGCGTTACCACCTCGACCTCTA
GCCTTATTTCTATGAAAACCCCCACGCCCAGTATCTGCAGACTGAGAACGATTACGCATT
TTGGCCAGCTGCAAGTCCTCTTTAACCTTATCAATTACGTCGTCTGGAATCCGTAAGTAT
TTTATTATGCTTCCACGAATATAACACTCCGGCATTTTCCAGAAGCGATCCCCATCTCGA
GATGTACAAATAACTTCTTTAAGATGAATGTTCATCCAGTCATCGCCAGGCGACAAGGTG
GCCGTTATAAGTTCTCACCACTTTTCAATTCACCGAGAATATGAAAATCCGTTGCACCCT
TGAGGGATG

consensusID : consensus_9105#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 346
fasta sequence

                              [ACTGAGAACGATTACGCATTTTGGCCAGCTGCAAGTCCTCTTTAACCTTATCAATTACGTCGTCTGGAATCCGTAAGTATTTTATTATGCTTCCACGAATATAACACTCCGGCATTTTCCAGAAGCGATCCCCATCCTATGGAGTGTAAGCTCAGCATATTTATAGGATTTACTCGAGATGTACAAATAACTTCTTTAAGATGAATGTTCATCCAGTCATCGCAAGCGACAAGGTGGCCGTTATAAGTTTCACCACTTTTCAATTCAACGAGCATAGGAAGATTCGTTGCAGCCTTGAGGAGTGTCACAGGTAACATTGAGGAATGCAATTAGGCGCCTAATATTT]

[+] EMBL CD097575             [ACTGAGAACGATTACGCATTTTGGCCAGCTGCAAGTCCTCTTTAACCTTATCAATTACGTCGTCTGGAATCCGTAAGTATTTTATTATGCTTCCACGAATATAACACTCCGGCATTTTCCAGAAGCGATCCCCATCCTATGGAGTGTAAGCTCAGCATATTTATAGGATTTACTCGAGATGTACAAATAACTTCTTTAAGATGAATGTTCATCCAGTCATCGCAAGCGACAAGGTGGCCGTTATAAGTTTCACCACTTTTCAATTCAACGAGCATAGGAAGATTCGTTGCAGCCTTGAGGAGTGTCACAGGTAACATTGAGGAATGCAATTAGGCGCCTAATATTT]




>consensus_9105#1
ACTGAGAACGATTACGCATTTTGGCCAGCTGCAAGTCCTCTTTAACCTTATCAATTACGT
CGTCTGGAATCCGTAAGTATTTTATTATGCTTCCACGAATATAACACTCCGGCATTTTCC
AGAAGCGATCCCCATCCTATGGAGTGTAAGCTCAGCATATTTATAGGATTTACTCGAGAT
GTACAAATAACTTCTTTAAGATGAATGTTCATCCAGTCATCGCAAGCGACAAGGTGGCCG
TTATAAGTTTCACCACTTTTCAATTCAACGAGCATAGGAAGATTCGTTGCAGCCTTGAGG
AGTGTCACAGGTAACATTGAGGAATGCAATTAGGCGCCTAATATTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9105#0      TTTTTTTTTTTTTTTTTTTCCTTAAAAATATTAACTGATATTTTATATAACAATGTCAAA 60
consensus_9105#1      ------------------------------------------------------------
                                                                                  

consensus_9105#0      CAAAATAATTGGGTTTGTCAATATTCACAAAATAGTAGACAGTACATTTGGATATACAAT 120
consensus_9105#1      ------------------------------------------------------------
                                                                                  

consensus_9105#0      TAGTGGTTTTCTTATTTACCACGAAATCCTCCACCACGGCCAGGACCACCAGGCACACTC 180
consensus_9105#1      ------------------------------------------------------------
                                                                                  

consensus_9105#0      CCGCCACGCCCTGCTCCTCCACGACCTCGATTATTAGGGGCGTTACCACCTCGACCTCTA 240
consensus_9105#1      ------------------------------------------------------------
                                                                                  

consensus_9105#0      GCCTTATTTCTATGAAAACCCCCACGCCCAGTATCTGCAGACTGAGAACGATTACGCATT 300
consensus_9105#1      ----------------------------------------ACTGAGAACGATTACGCATT 20
                                                              ********************

consensus_9105#0      TTGGCCAGCTGCAAGTCCTCTTTAACCTTATCAATTACGTCGTCTGGAATCCGTAAGTAT 360
consensus_9105#1      TTGGCCAGCTGCAAGTCCTCTTTAACCTTATCAATTACGTCGTCTGGAATCCGTAAGTAT 80
                      ************************************************************

consensus_9105#0      TTTATTATGCTTCCACGAATATAACACTCCGGCATTTTCCAGAAGCGATCCCCATC---- 416
consensus_9105#1      TTTATTATGCTTCCACGAATATAACACTCCGGCATTTTCCAGAAGCGATCCCCATCCTAT 140
                      ********************************************************    

consensus_9105#0      ---------------------------------TCGAGATGTACAAATAACTTCTTTAAG 443
consensus_9105#1      GGAGTGTAAGCTCAGCATATTTATAGGATTTACTCGAGATGTACAAATAACTTCTTTAAG 200
                                                       ***************************

consensus_9105#0      ATGAATGTTCATCCAGTCATCGCCAGGCGACAAGGTGGCCGTTATAAGTTCTCACCACTT 503
consensus_9105#1      ATGAATGTTCATCCAGTCATCGC-AAGCGACAAGGTGGCCGTTATAAGTT-TCACCACTT 258
                      *********************** * ************************ *********

consensus_9105#0      TTCAATTCACCGAGAATATGAAAATCCGTTGCACCCTTGAGGGATG-------------- 549
consensus_9105#1      TTCAATTCAACGAGCATAGGAAGATTCGTTGCAGCCTTGAGGAGTGTCACAGGTAACATT 318
                      ********* **** *** *** ** ******* ********  **              

consensus_9105#0      ----------------------------
consensus_9105#1      GAGGAATGCAATTAGGCGCCTAATATTT 346