cluster # 9111

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Schistosoma mansoni
cluster # 9111 cluster # 9111 Sequences # 8 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9111#0 length = 544 sequences # 2
consensus_9111#1 length = 492 sequences # 3

consensus_9111#2 length = 463 sequences # 1
consensus_9111#3 length = 407 sequences # 2

consensusID : consensus_9111#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 544
fasta sequence

                              [CAAAATCTTGTAAACATGTTGTTTCTATTTGATGGTACGATGTGGTCTGTTTGATTGGTATATAAACCTAGTATGTTTGAGAGTAATGATTCATATTGCAGAGGCTGTTATTGGTGTTCTGGATACAACTGGCTGGTCTAAACAGGAATCAGGACTGATAAGTACTCTAGACTGCTCGTACGGGTTTCGTGTGTCATTGGTCTGATCGATAAGTCGCTGCTCTCTAATAGGCGGGCCACAAGATATAACAATTGGCGACACACGTTATAAGAATTTATATAATGCTGTGAGAGGTATGAGAAAGATTGTCATTTCCTGGTTACTTAAGCTGTAGAAGAATACTTCTTTAGGTTATCTGAAGAGAAAGTCAAATTATGTGTATGAGTGGCCATGACTTTCTGATAGCATGACAACAGTGCCCGAAGAATAACTACTTGAGGCAGATCACATTGAACTTTATGAGTAGTTTTAGATGTGTTATTTCTATACTTTAGAGGTGACAGAAATCCGTTAGAGGAATCTGAGGTGTACTACTTTTTAGCCA]

[+] EMBL CD087198             [CAAAATCTTGTAAACATGTTGTTTCTATTTGATGGTACGATGTGGTCTGTTTGATTGGTATATAAACCTAGTATGTTTGAGAGTAATGATTCATATTGCAGAGGCTGTTATTGGTGTTCTGG                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CD160221             [                                                        GGTATATAAACCCAGTATGTTTGAGAATAATGATTCATATTGCAGAGGCTATTATTGGTGTTCTGGATACAACTGGCTGGTCTAAACAGGAATCAGGACTGATAAGTACTCTAGACTGCTCGTACGGGTTTCGTGTGTCATTGGTCTGATCGATAAGTCGCTGCTCTCTAATAGGCGGGCCACAAGATATAACAATTGGCGACACACGTTATAAGAATTTATATAATGCTGTGAGAGGTATGAGAAAGATTGTCATTTCCTGGTTACTTAAGCTGTAGAAGAATACTTCTTTAGGTTATCTGAAGAGAAAGTCAAATTATGTGTATGAGTGGCCATGACTTTCTGATAGCATGACAACAGTGCCCGAAGAATAACTACTTGAGGCAGATCACATTGAACTTTATGAGTAGTTTTAGATGTGTTATTTCTATACTTTAGAGGTGACAGAAATCCGTTAGAGGAATCTGAGGTGTACTACTTTTTAGCCA]




>consensus_9111#0
CAAAATCTTGTAAACATGTTGTTTCTATTTGATGGTACGATGTGGTCTGTTTGATTGGTA
TATAAACCTAGTATGTTTGAGAGTAATGATTCATATTGCAGAGGCTGTTATTGGTGTTCT
GGATACAACTGGCTGGTCTAAACAGGAATCAGGACTGATAAGTACTCTAGACTGCTCGTA
CGGGTTTCGTGTGTCATTGGTCTGATCGATAAGTCGCTGCTCTCTAATAGGCGGGCCACA
AGATATAACAATTGGCGACACACGTTATAAGAATTTATATAATGCTGTGAGAGGTATGAG
AAAGATTGTCATTTCCTGGTTACTTAAGCTGTAGAAGAATACTTCTTTAGGTTATCTGAA
GAGAAAGTCAAATTATGTGTATGAGTGGCCATGACTTTCTGATAGCATGACAACAGTGCC
CGAAGAATAACTACTTGAGGCAGATCACATTGAACTTTATGAGTAGTTTTAGATGTGTTA
TTTCTATACTTTAGAGGTGACAGAAATCCGTTAGAGGAATCTGAGGTGTACTACTTTTTA
GCCA

consensusID : consensus_9111#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 492
fasta sequence

                              [GGGATAATAACACAAATAGACCAAATATTTAGGGATTGAGAAGGGCTTGACGGTGAGCAGTAAATACCACCGAGTACCTGAAACTTCCTAGTAACCGTCATCAAGAAAGGATATCATATTTGTGATACTGAACTAGAATCAAATTGATGTTACTTGTTATGTATTCCTAAAAGCTTGACCATACAGTTCGAGGAGTAACTGTTGGAGGTTCACACAATCGTTTTGTGAGTAATTTTTGTTGTGCTATCCCGGTTTCCCTCAAGCCAACAAAAAATATTGTGTCGTCCGGATCCTATTTAGCACGTAATACCTTTTTTTCCTGCTTAACTGTTGTCTGTCAACTTCTTTGTACCAAGTATTAATACAATACTAGCCATAACATACTAAGTTATATCAAATGATGATCATGTACAACTTAATTTTGTAGTAAATTTATCCCAGTGGCAATCACATTTTTGTATGGTGTTCCTGTAATCGGTTGGATCTTATGGC]

[+] EMBL CD069683             [GGGATAATAACACAAATAGACCAAATATTTAGGGATTGAGAAGGGCTTGACGGTGAGCAGTAAATACCACCGAGTACCTGAAACTTCCTAGTAACCGTCATCAAGAAAGGATATCATATTTGTGATACTGAACTAGAATCAAATTGATGTTACTTGTTATGTATTCCTAAAAGCTTGACCATACAGTTCGAGGAGTAACTGTTGGAGGTTCACACAATCGTTTTGTGAGTAATTTTTGTTGTGCTATCCCGGTTTCCCTCAAGCCAACAAAAAATATTGTGTCGTCCGGATCCTATTTAGCACGTAATACCTTTTTTTCCTGCTTAACTGTTGTCTGTCAACTTCTTTGTACCAAGTATTAATACAATACTAGCCATAACATACTAAGTTATATCAAATGATGATCATGTACAACTTAATTTTGTAGTAAATTTATCCCAGTGGCAATCACATTTTTGTATGGTGTTCCTGTAATCGGTTGGATCTTATGGC]
[+] EMBL CD069693             [GGGATAATAACACAAATAGACCAAATATTTAGGGATTGAGAAGGGCTTGACGGTGAGCAGTAAATACCACCGAGTACCTGAAACTTCCTAGTAACCGTCATCAAGAAAGGATATCATATTTGTGATACTGAACTAGAATCAAATTGATGTTACTTGTTATGTATTCCTAAAAGCTTGACCATACAGTTCGAGGAGTAACTGTTGGAGGTTCACACAATCGTTTTGTGAGTAATTTTTGTTGTGCTATCCCGGTTTCCCTCAAGCCAACAAAAAATATTGTGTCGTCCGGATCCTATTTAGCACGTAATACCTTTTTTTCCTGCTTAACTGTTGTCTGTCAACTTCTTTGTACCAAGTATTAATACAATACTAGCCATAACATACTAAGTTATATCAAATGATGATCATGTACAACTTAATTTTGTAGTAAATTTATCCCAGTGGCAATCAAATTTTTGTATGGTGTTCCTGTAATCGGTTG           ]
[+] EMBL CD069684             [GGGATAATAACACAAATAGACCAAATATTTAGGGATTGAGAAGGGCTTGACGGTGAGCAGTAAATACCACCGAGTACCTGAAACTTCCTAGTAACCGTCATCAAGAAAGGATATCATATTTGTGATACTGAACTAGAATCAAATTGATGTTACTTGTTATGTATTCCTAAAAGCTTGACCATACAGTTCGAGGAGTAACTGTTGGAGGTTCACACAATCGTTTTGTGAGTAATTTTTGTTGTGCTATCCCGGTTTCCCTCAAGCCAACAAAAAATATTGTGTCGTCCGGATCCTATTTAGCACGTAATACCTTTTTTTCCTGCTTAACTGTTGTCTGTCAACTTCTTTGTACCAAGTATTAATACAATACTAGCCATAACATACTAAGTTATATCAAATGATGATCATGTACAACTTAATTTTGTAGTAAATTTATCCCAGTG                                                 ]




>consensus_9111#1
GGGATAATAACACAAATAGACCAAATATTTAGGGATTGAGAAGGGCTTGACGGTGAGCAG
TAAATACCACCGAGTACCTGAAACTTCCTAGTAACCGTCATCAAGAAAGGATATCATATT
TGTGATACTGAACTAGAATCAAATTGATGTTACTTGTTATGTATTCCTAAAAGCTTGACC
ATACAGTTCGAGGAGTAACTGTTGGAGGTTCACACAATCGTTTTGTGAGTAATTTTTGTT
GTGCTATCCCGGTTTCCCTCAAGCCAACAAAAAATATTGTGTCGTCCGGATCCTATTTAG
CACGTAATACCTTTTTTTCCTGCTTAACTGTTGTCTGTCAACTTCTTTGTACCAAGTATT
AATACAATACTAGCCATAACATACTAAGTTATATCAAATGATGATCATGTACAACTTAAT
TTTGTAGTAAATTTATCCCAGTGGCAATCACATTTTTGTATGGTGTTCCTGTAATCGGTT
GGATCTTATGGC

consensusID : consensus_9111#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 463
fasta sequence

                              [CTGATATTTAGTCAGTTCGATTACGGGTAGTGTTAACAACAATATTCTATGTCTAGATCTCAATGAAGGAACCTGATGAACTTTCATCTTATTTCTTATCTGATACACCTATCGTAACTCAGTTTCCAGATGACTGTAGTGAAGTGATTCCACAAGTCCGTCCCATTTTCGTTTCGTTATACAAAGGCATAGGTTTACGATAAATATAAATATCAGTTGCTGAAGTACGCAATTACTGTGCGATCTAACTATAGACAACCAGAGCAACAATTTTTATAGGTACATGGAACGTCCGAACAATGTGAGAGACAGGGAAGACCAGTCAAATAGCAATGGAAATGAGAAGATACAAATTGGCAGTACTCGGAATCAGCGAAACCCATTGGACACAAGCTGGACAACAAAGGCAAGATACGGGGATAATGCTGCTGTACTCTGGTCACGAAGAAGAAATGCTCCACAC]

[+] EMBL CD086851             [CTGATATTTAGTCAGTTCGATTACGGGTAGTGTTAACAACAATATTCTATGTCTAGATCTCAATGAAGGAACCTGATGAACTTTCATCTTATTTCTTATCTGATACACCTATCGTAACTCAGTTTCCAGATGACTGTAGTGAAGTGATTCCACAAGTCCGTCCCATTTTCGTTTCGTTATACAAAGGCATAGGTTTACGATAAATATAAATATCAGTTGCTGAAGTACGCAATTACTGTGCGATCTAACTATAGACAACCAGAGCAACAATTTTTATAGGTACATGGAACGTCCGAACAATGTGAGAGACAGGGAAGACCAGTCAAATAGCAATGGAAATGAGAAGATACAAATTGGCAGTACTCGGAATCAGCGAAACCCATTGGACACAAGCTGGACAACAAAGGCAAGATACGGGGATAATGCTGCTGTACTCTGGTCACGAAGAAGAAATGCTCCACAC]




>consensus_9111#2
CTGATATTTAGTCAGTTCGATTACGGGTAGTGTTAACAACAATATTCTATGTCTAGATCT
CAATGAAGGAACCTGATGAACTTTCATCTTATTTCTTATCTGATACACCTATCGTAACTC
AGTTTCCAGATGACTGTAGTGAAGTGATTCCACAAGTCCGTCCCATTTTCGTTTCGTTAT
ACAAAGGCATAGGTTTACGATAAATATAAATATCAGTTGCTGAAGTACGCAATTACTGTG
CGATCTAACTATAGACAACCAGAGCAACAATTTTTATAGGTACATGGAACGTCCGAACAA
TGTGAGAGACAGGGAAGACCAGTCAAATAGCAATGGAAATGAGAAGATACAAATTGGCAG
TACTCGGAATCAGCGAAACCCATTGGACACAAGCTGGACAACAAAGGCAAGATACGGGGA
TAATGCTGCTGTACTCTGGTCACGAAGAAGAAATGCTCCACAC

consensusID : consensus_9111#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 407
fasta sequence

                              [TATGTACATGGAACCTCCGGACAATGTGGGAGACTGGGAAGACCAGTCAAATAGCAATGGAAATGAGGAGATACAAATTGGCAGTACTTGGAATCAGCGAAACCCATCGGACACAAGCTGGACAGCAAAGGCTAGATACGGGAGAGATGCTGCTGTACTCTGTTCACGAAGAGGAAAATGCTCCACACACTACTACTATATGATTTACCATTCCTGAGTTATACCCAGTTTATTATTAATGTTCCCCTTATTCACAGCCACATTTAGCTAAATCTTGTACAAATGTTATTTTCTATTTGATGGTTCGATGTGATCTGTGTGATTGGTATATAAACCCAGTATGTTTGAGAATAATGATTCATATTGCAGAGGCTATTATTGGTGTTCTGGATACAACTGGCTGGTCT]

[+] EMBL CD160283             [TATGTACATGGAACCTCCGGACAATGTGGGAGACTGGGAAGACCAGTCAAATAGCAATGGAAATGAGGAGATACAAATTGGCAGTACTTGGAATCAGCGAAACCCATCGGACACAAGCTGGACAGCAAAGGCTAGATACGGGAGAGATGCTGCTGTACTCTGTTCACGAAGAGGAAAATGCTCCACACACTACTACTATATGATTTACCATTCCTGAGTTATACCCAGTTTATTATTAATGTTCCCCTTATTCACAGCCACATTTAGCTAAATCTTGTACAAATGTTATTTTCTATTTGATGGTTCGATGTGATCTGTGTGATTGGTATATAAACCCAGTATGTTTGAGAATAATGATTCATATTGCAGAGGCTATTATTGGTGTTCTGGATACAACTGGCTGGTCT]
[+] EMBL CD160090             [TATGTACATGGAACCTCCGGACAATGTGGGAGACTGGGAAGACCAGTCAAATAGCAATGGAAATGAGGAGATACAAATTGGCAGTACTTGGAATCAGCGAAACCCATCGGACACAAGCTGGACAGCAAAGGCTAGATACGGGAGAGATGCTGCTGTACTCTGTTCACGAAGAGGAAAATGCTCCACACACTATTACTATATGATTTACCATTCCTGAGTTATACCCAGTTTATTATTAATGTTCCCCTTATTCACAGCCACATTTAGCTTAATCTTGTACAAATGTTATTTTCTATTTGATGGTTCGATGTGATCTGTGTGATTGGTATTTTAACCCAGTATGTTTGAGAATTATGATTCATATTGCAGAGGCTATT                              ]




>consensus_9111#3
TATGTACATGGAACCTCCGGACAATGTGGGAGACTGGGAAGACCAGTCAAATAGCAATGG
AAATGAGGAGATACAAATTGGCAGTACTTGGAATCAGCGAAACCCATCGGACACAAGCTG
GACAGCAAAGGCTAGATACGGGAGAGATGCTGCTGTACTCTGTTCACGAAGAGGAAAATG
CTCCACACACTACTACTATATGATTTACCATTCCTGAGTTATACCCAGTTTATTATTAAT
GTTCCCCTTATTCACAGCCACATTTAGCTAAATCTTGTACAAATGTTATTTTCTATTTGA
TGGTTCGATGTGATCTGTGTGATTGGTATATAAACCCAGTATGTTTGAGAATAATGATTC
ATATTGCAGAGGCTATTATTGGTGTTCTGGATACAACTGGCTGGTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9111#2      --------------------------------------------------------CTGA 4
consensus_9111#3      ------------------------------------------------------------
consensus_9111#0      CAAAATCTTGTAAACATGTTGTTTCTATTTGATGGTACGATGTGGTCTGTTTGATTGGTA 60
consensus_9111#1      GGGATAATAACACAAATAGACCAAATATTTAGGGATTGAGAAGGGCTTGACGGTGAGCAG 60
                                                                                  

consensus_9111#2      TATTTAGT-CAGTTCGATTACGGGT----AGTGTTAACAACAATATTCTATGTCTAGATC 59
consensus_9111#3      TATGTACA-TGGAAC--CTCCGGAC----AATGTGGGAGACTGGGAAGACCAGTCAAATA 53
consensus_9111#0      TATAAACC-TAGTATGTTTGAGAGT----AATGATTCATATTGCAGAGGCTGTTATTGGT 115
consensus_9111#1      TAAATACCACCGAGTACCTGAAACTTCCTAGTAACCGTCATCAAGAAAG--GATATCATA 118
                      **   *     *      *          * *       *                    

consensus_9111#2      TCAATG-AAGGAA---CCTGATGAACTTTCATCTTATTTCTTATCTGATACACCTA--TC 113
consensus_9111#3      GCAATGGAAATGA---GGAGATACAAATTGGCAGTACTTGGAATCAGCGAAACCCA--TC 108
consensus_9111#0      GTTCTGGATACAACTGGCTGGTCTAAACAGGAATCAGGACTGATAAGTACTCTAGA--CT 173
consensus_9111#1      TTTGTGATACTGA--ACTAGAATCAAATTGATGTTACTTGTTATGTATTCCTAAAAGCTT 176
                          **      *      *    *          *      **           *    

consensus_9111#2      GTAACTC-AGTTTCCAGATGACTGTAGTGAAGTGATTCCACAAGTCCGTCCCATT---TT 169
consensus_9111#3      GGACACA-AGCT---GGACAGCAAAGGCTAGATACGGGAGAGATGCTGCTGTACT---CT 161
consensus_9111#0      GCTCGTACGGGTTTCGTGTGTCATTGGTCTGATCGATAAGTCGCTGCTCTCTAATAGGCG 233
consensus_9111#1      GACCATACAGTT--CGAGGAGTAACTGTTGGAGGTTCACACAATCGTTTTGTGAG---TA 231
                      *        * *              *                                 

consensus_9111#2      CGTTTCGTTATACAAAG---GCATAGGTTTACGATAA--ATATAAATATCAGTTGCTGAA 224
consensus_9111#3      GTTCACGAAGAGGAAAA---TGCTCCACACACTACTACTATATGATTTACCATTCCTGAG 218
consensus_9111#0      GGCCACAAGATATAACAATTGGCGACACACGTTATAAGAATTTATATAATGCTGTGAGAG 293
consensus_9111#1      ATTTTTGTTGTGCTATC-CCGGTTTCCCTCAAGCCAACAAAAAATATTGTGTCGTCCGGA 290
                                    *                     *  *      *          *  

consensus_9111#2      GTACGC---AATTACTGT--GCGATCTAACTATAGACAACCAGAGCAA--CAATTTTT-- 275
consensus_9111#3      TTATACCCAGTTTATTATTAATGTTCCCCTTATTCACAGCCACATTTAGCTAAATCTT-- 276
consensus_9111#0      GTATGA--GAAAGATTGTC-ATTTCCTGGTTACTTA-AGCTGTAGAAGAATACTTCTTTA 349
consensus_9111#1      TCCTATTTAGCACGTAATACCTTTTTTTCCTGCTTA--ACTGTTGTCTGTCAACTTCT-- 346
                                       *            *    *   *           *  *  *  

consensus_9111#2      -ATAGGTACATGGAACGTCCGAACAATGTG-AGAGACAGGGAAGACCA----GTCAAATA 329
consensus_9111#3      -GTA--CAAATGTTATTTTCTA----TTTG-ATGGTTCGATGTGATCT----GTGTGATT 324
consensus_9111#0      GGTTATCTGAAGAGAAAGTCAAATTATGTGTATGAGTGGCCATGACTTTCTGATAGCATG 409
consensus_9111#1      --TTGTACCAAGTATTAATACAATACTAGCCATAACATACTAAGTTAT----ATCAAATG 400
                        *      * *         *    *    *           *         *   ** 

consensus_9111#2      GCAATGGAAATGAGAAGATACAAATTGGCAGTACTCGGAATCAGCGAAACCCATTGGACA 389
consensus_9111#3      GGTATATAAACCC-AGTATGTTTGAGAATAATGATTCATATT-GCAGAGGCTATTATTGG 382
consensus_9111#0      ACAACAGTGCCCGAAGAATAACTACTTGAGGCAGATCACATT---GAACTTTATGAGTAG 466
consensus_9111#1      ATGATCATGTACAACTTAATTTTGTAGTAAATTTATCCCAGTGGCAATCACATTTTTGTA 460
                         *             *                     *             *      

consensus_9111#2      CAAGCTGGACAACAAAGGCAAGATACGGGGATAATGCTGCTGTACTCTGGTCA-CGAAGA 448
consensus_9111#3      TGTTCTGGATACAACTGGCTGGTCT----------------------------------- 407
consensus_9111#0      TTTTAGATGTGTTATTTCTATACTTTAGAGGTGACAGAAATCCGTTAGAGGAATCTGAGG 526
consensus_9111#1      TGGTGTTCCTGTAATCGGTTGGATCTTATGGC---------------------------- 492
                                   *                                              

consensus_9111#2      AGAAATGCTCCACAC--- 463
consensus_9111#3      ------------------
consensus_9111#0      TGTACTACTTTTTAGCCA 544
consensus_9111#1      ------------------