cluster # 9132

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Schistosoma mansoni
cluster # 9132 cluster # 9132 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9132#0 length = 621 sequences # 7

consensus_9132#1 length = 467 sequences # 1

consensusID : consensus_9132#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 621
fasta sequence

                              [ATTGGCCCTCAGGCCAGAATCGGCACGAGGTTTACTTTTAACCGTGTGTTTTCGCTCATATGTCGAAGTCCCAAAAACCACACTTTGTGTTCTCACAAAGTTTTGTAT-ATAGAGTTTTGGTTGCTAGAAATCTTTCTCAAAAAGCCGAGGCTATTGGTTCTGAAGGCACAATAAAAACTCATGTAGATGAGTCTCGTCCAAAATTTATCATCACGTACGACGAGTTAAGCTCGCAAATTTCCAAAGGAACTGTCCAACTGTTTGATGTAAGAAGTAGCGACGATGTGAAGTCCACTGGCAGTATTCCGGGTTCCGTTAATATACCTCTTGCCGATTTGAAGAAATCACTCATTCTCAGTGACAGCGAA-TTTTTTCAGAAATACGGTGTATCTAAGCCGAAAACGAGCGACAGCAACGTAATATTTTATGGATTGTCGGATGTGTCATCAGCAAGTGCCTGTGAAATAGCTCACAGTCTGGGGT-TTAAAAGGGCGAAATATTATTTGAAAGGATGGACGGAGTGGTCTACAATGCGTAATAAGTAAACAGTAACAAATTTAATGCATCTGTATTTGATGGTGTACATAATCTACAATAAACTTAAAAACAGTTTGAGCCAAA]

[+] EMBL CD083524             [ATTGGCCCTCAGGCCAGAATCGGCACGAGGTTTACTTTTAACCGTGTGTTTTCGCTCATATGTCGAAGTCCCAAAAACCACACTTTGTGTTCTCACAAAGTTTTGTAT ATAGAGTTTTGGTTGCTAGAAATCTTTCTCAAAAAGCCGAGGCTATTGGTTCTGAAGGCACAATAAAAACTCATGTAGATGAGTCTCGTCCAAAATTTATCATCACGTACGACGAGTTAAGCTCGCAAATTTCCAAAGGAACTGTCCAACTGTTTGATGTAAGAAGTAGCGACGATGTGAAGTCCACTGGCAGTATTCCGGGTTCCGTTAATATACCTCTTGCCGATTTGAAGAAATCACTCATTCTCAGTGACAGCGAA TTTTTTCAGAAATACGGTGTATCTNAGCCGAAAACGAGCGACAGCAACGTAATATTTT                                                                                                                                                                                                    ]
[+] EMBL CD083605             [                    tcGCACGAGGTTTACTTTTAACCGTGTGTTTTCGCTCATATGTCGAAGTCCCAAAAACCACACTTTGTGTTCTCACAAAGTTTTGTATAATAGAGTTTTGGTTGCTAGAAATCTTTCTCAAAAAGCCGAGGCTATTGGTTCTGAAGGCACAATAAAAACTCATGTAGATGAGTCTCGTCCAAAATTTATCATCACGTACGACGAGTTAAGCTCGCAAATTTCCAAAGGAACTGTCCAACTGTTTGATGTAAGAAGTAGCGACGATGTGAAGTCCACTGGCAGTATTCCGGGTTCCGTTAATATACCTCTTGCCGATTTGAAGAAATCACTCATTCTCAGTGACAGCGAA TTTTTTCAGAAATACGGTGTATCTAAGCCGAAAACGAGCGACAGCAACGTAATATTTTATGGATTGTCGGATGTGTCATCAGCAAGTGCCTGTGAAATAGCTCACAGTCTGGGGT TTAAAAGGGCGAAATATTATTTGAAAGGATGGACGGAGTGGTCTACAATGCGTAATAAGTAAACCGTCACAAATTTAATGCATCTGTAT                                                 ]
[+] EMBL CD138588             [                                                                                                                                     TTTCTCAAAAAGCCGAGGCTATTGGTTCTGAAGGCACAATAAAAACTCATGTAGATGAGTCTCGTCCAAAATTTATCATCACGTACGACGAGTTAAGCTCGCAAATTTCCAAAGGAACTGTCCAACTGTTTGATGTAAGAAGTAGCGACGATGTGAAGTCCACTGGCAGTATTCCGGGTTCCGTTAATATACCTCTTGCCGATTTGAAGAAATCACTCATTCTCAGTGACAGCGAA TTTTTTCAGAAATACGGTGTATCTAAGCCGAAAACGAGCGACAGCAACGTAATATTTTATGGATTGTCGGATGTGTCATCAGCAAGTGCCTGTGAAATAGCTCACAGTCTGGGGT TTAAAAGGGCGAAATATTATTTGAAAGGATGGACGGAGTGGTCTACAATGCGTAATAAGTAAACAGTAACAAATTTAATGCATCTGTATTTGATGGTGTACATAATCTACAATAAACTTAAAAACAGTTTGAGCCAAA]
[-] EMBL CD093450             [                                                                                                                                                                        ACGATAAAAACTCATGTAGATGAGTCTCGTCCAAAATTTATCATCACGTACGACGAGTTAAGCTCGCAAATTTCCAAAGGAACTGTCCAACTGTTTGATGTAAGAAGTAGCGACGATGTGAAGTCCACTGGCAGTATTCCGGGTTCCGTTAATATACCTCTTGCCGATTTGAAGAAATCACTCATTCTCAGTGACAGCGAA TTTTTTCAGAAATACGGTGTATCTAAGCCGAATACGAGCGACAGCAACGTAATATTTTATGGATTGTCGGATGTGTCATCAGCAAGTGCCTGTGAAATAGCTCACAGTCTGGGGT TTAAAAGGGCGAAATATTATTTGAAAGGATGGACGGAGTGGTCTACAATGCGTAATAAGTACACAGTAACAAATTTAATGCATCTGTATTTGATGGTGTACATAATCTACAATAAACTTAA                 ]
[+] EMBL CD138562             [                                                                                                                                                                          AATAAAAACTCATGTAGATGAGTCTCGTCCAAAATTTATCATCACGTACGACGAGTTAAGCTCGCAAATTTCCAAAGGAACTGTCCAACTGTTTGATGTAAGAAGTAGCGACGATGTGAAGTCCACTGGCAGTATTCCGGGTTCCGTTAATATACCTCTTGCCGATTTGAAGAAATCACTCATTCTCAGTGACAGCGAA TTTTTTCAGAAATACGGTGTATCTAAGCCGAAAACGAGCGACAGCAACGTAATATTTTATGGATTGTCGGATGTGTCATCAGCAAGTGCCTGAGAAATAGCTCACAGTCTGGGGT TTAAAAGGGCGAAATATTATTTGAAAGGATGGACGGAGTGGTCTACAATGCGTAATAAGTAAACAGTAACAAATTTAATGCATCTGTATTTGATGGGGTACATAATCTACAATAAACTTA                  ]
[-] EMBL CD093396             [                                                                                                                                                                                                                  ATCACGTACGACGAGTTAAGCTCGCAAATTTCCAAAGGAACTGTCCAACTGTTTGATGTAAGAAGTAGCGACGATGTGAAGTCCACTGGCAGTATTCCGGGTTCCGTTAATATACCTCTTGCCGATTTGAAGAAATCACTCATTCTCAGTGACAGCGAATTTTTTTCAGAAATACGGTGTATCTAAGCCGAAAACGAGCGACAGCAACGTAATATTTTATGGATTGTCGGATGTGTCATCAGCAAGTGCCTGTGAAATAGCTCACAGTCTGGGGTCTTAAAAGGGCGAAATATTATTTGAAAGGATGGACGGAGTGGTCTACAATGCGTAATAAGTAAACAGCAACAAATTTAATGCATCTGTATTTGATGGTGTACATAATCTACAATAAACTTAA                 ]
[-] EMBL CD093446             [                                                                                                                                                                                                                                 TTAAGCTCGCAAATTTCCAAAGGAACTGTCCAACTGTTTGATGTAAGAAGTAGCGACGATGTGAAGTCCACTGGCAGTATTCCGGGTCCCGTTAATATACCTCTTGCCGATTTGAAGAAATCACTCATTCTCAGTGACAGCGAA TGTTTTCAGAGATACGGTGTATCTAAGCCGAAGACGAGCGACAGCAACGTAATATTTTATGGATTGTCGGATGTGTCATCAGCAAGTGCCTGTGAAATAGCTCACAGTCTGGGGT TTAAAAGGGCGAAATATTATTTGAAAGGATGGACGGAGTGGTCTACAATGCGTAATAAGTAAACAGTAACAAATTTAATGCATCTGTATTTGATGGTGTACATAATCTACAATAAACTTAA                 ]




>consensus_9132#0
ATTGGCCCTCAGGCCAGAATCGGCACGAGGTTTACTTTTAACCGTGTGTTTTCGCTCATA
TGTCGAAGTCCCAAAAACCACACTTTGTGTTCTCACAAAGTTTTGTATATAGAGTTTTGG
TTGCTAGAAATCTTTCTCAAAAAGCCGAGGCTATTGGTTCTGAAGGCACAATAAAAACTC
ATGTAGATGAGTCTCGTCCAAAATTTATCATCACGTACGACGAGTTAAGCTCGCAAATTT
CCAAAGGAACTGTCCAACTGTTTGATGTAAGAAGTAGCGACGATGTGAAGTCCACTGGCA
GTATTCCGGGTTCCGTTAATATACCTCTTGCCGATTTGAAGAAATCACTCATTCTCAGTG
ACAGCGAATTTTTTCAGAAATACGGTGTATCTAAGCCGAAAACGAGCGACAGCAACGTAA
TATTTTATGGATTGTCGGATGTGTCATCAGCAAGTGCCTGTGAAATAGCTCACAGTCTGG
GGTTTAAAAGGGCGAAATATTATTTGAAAGGATGGACGGAGTGGTCTACAATGCGTAATA
AGTAAACAGTAACAAATTTAATGCATCTGTATTTGATGGTGTACATAATCTACAATAAAC
TTAAAAACAGTTTGAGCCAAA

consensusID : consensus_9132#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 467
fasta sequence

                              [CGTTTTTCACAATAATGTCATTAGTCCGTCTTACTTCATGTCCAGCTTTTACTTTTAACCGTGTGTTTTCGCTCATATGTCGAAGTCCCAAAAACCACACTTTGTGTTCTCACAAAGTTTTGTATAATAGAGTTTTGGTTGCTAGAAATCTTTCTCAAAAAGCCGAGGCTATTGGTTCTGAAGGCACAATAAAAACTCATGTAGATGAGTCTCGTCCAAAATTTAACATCACGTACGACGAGTTAAGCTCGCAAATTTCCAAAGGAACTGTCCAACTGTTTGATGTAAGAAGTAGCGACGATGTGAAGTCCACTGGCAGTATTCCGGGTTCCGTTAATATACCTCTTGCCGATTTGAAGAAATCACTCATTCTCAGTGACAGCGAATTTTTTCAGAAATACGGTGTATCTAAGCCGAAAACGAGCGACAGCAACGTAATATTTTATGGATTGTCGGATGTGTCATCA]

[-] EMBL CD136674             [CGTTTTTCACAATAATGTCATTAGTCCGTCTTACTTCATGTCCAGCTTTTACTTTTAACCGTGTGTTTTCGCTCATATGTCGAAGTCCCAAAAACCACACTTTGTGTTCTCACAAAGTTTTGTATAATAGAGTTTTGGTTGCTAGAAATCTTTCTCAAAAAGCCGAGGCTATTGGTTCTGAAGGCACAATAAAAACTCATGTAGATGAGTCTCGTCCAAAATTTAACATCACGTACGACGAGTTAAGCTCGCAAATTTCCAAAGGAACTGTCCAACTGTTTGATGTAAGAAGTAGCGACGATGTGAAGTCCACTGGCAGTATTCCGGGTTCCGTTAATATACCTCTTGCCGATTTGAAGAAATCACTCATTCTCAGTGACAGCGAATTTTTTCAGAAATACGGTGTATCTAAGCCGAAAACGAGCGACAGCAACGTAATATTTTATGGATTGTCGGATGTGTCATCA]




>consensus_9132#1
CGTTTTTCACAATAATGTCATTAGTCCGTCTTACTTCATGTCCAGCTTTTACTTTTAACC
GTGTGTTTTCGCTCATATGTCGAAGTCCCAAAAACCACACTTTGTGTTCTCACAAAGTTT
TGTATAATAGAGTTTTGGTTGCTAGAAATCTTTCTCAAAAAGCCGAGGCTATTGGTTCTG
AAGGCACAATAAAAACTCATGTAGATGAGTCTCGTCCAAAATTTAACATCACGTACGACG
AGTTAAGCTCGCAAATTTCCAAAGGAACTGTCCAACTGTTTGATGTAAGAAGTAGCGACG
ATGTGAAGTCCACTGGCAGTATTCCGGGTTCCGTTAATATACCTCTTGCCGATTTGAAGA
AATCACTCATTCTCAGTGACAGCGAATTTTTTCAGAAATACGGTGTATCTAAGCCGAAAA
CGAGCGACAGCAACGTAATATTTTATGGATTGTCGGATGTGTCATCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9132#0      ----------------ATTGGCCCTCAGGCCAGAATCG-GCACGAGGTTTACTTTTAACC 43
consensus_9132#1      CGTTTTTCACAATAATGTCATTAGTCCGTCTTACTTCATGTCCAGCTTTTACTTTTAACC 60
                                       *      ** * *     **  *  *    *************

consensus_9132#0      GTGTGTTTTCGCTCATATGTCGAAGTCCCAAAAACCACACTTTGTGTTCTCACAAAGTTT 103
consensus_9132#1      GTGTGTTTTCGCTCATATGTCGAAGTCCCAAAAACCACACTTTGTGTTCTCACAAAGTTT 120
                      ************************************************************

consensus_9132#0      TGTATA-TAGAGTTTTGGTTGCTAGAAATCTTTCTCAAAAAGCCGAGGCTATTGGTTCTG 162
consensus_9132#1      TGTATAATAGAGTTTTGGTTGCTAGAAATCTTTCTCAAAAAGCCGAGGCTATTGGTTCTG 180
                      ****** *****************************************************

consensus_9132#0      AAGGCACAATAAAAACTCATGTAGATGAGTCTCGTCCAAAATTTATCATCACGTACGACG 222
consensus_9132#1      AAGGCACAATAAAAACTCATGTAGATGAGTCTCGTCCAAAATTTAACATCACGTACGACG 240
                      ********************************************* **************

consensus_9132#0      AGTTAAGCTCGCAAATTTCCAAAGGAACTGTCCAACTGTTTGATGTAAGAAGTAGCGACG 282
consensus_9132#1      AGTTAAGCTCGCAAATTTCCAAAGGAACTGTCCAACTGTTTGATGTAAGAAGTAGCGACG 300
                      ************************************************************

consensus_9132#0      ATGTGAAGTCCACTGGCAGTATTCCGGGTTCCGTTAATATACCTCTTGCCGATTTGAAGA 342
consensus_9132#1      ATGTGAAGTCCACTGGCAGTATTCCGGGTTCCGTTAATATACCTCTTGCCGATTTGAAGA 360
                      ************************************************************

consensus_9132#0      AATCACTCATTCTCAGTGACAGCGAATTTTTTCAGAAATACGGTGTATCTAAGCCGAAAA 402
consensus_9132#1      AATCACTCATTCTCAGTGACAGCGAATTTTTTCAGAAATACGGTGTATCTAAGCCGAAAA 420
                      ************************************************************

consensus_9132#0      CGAGCGACAGCAACGTAATATTTTATGGATTGTCGGATGTGTCATCAGCAAGTGCCTGTG 462
consensus_9132#1      CGAGCGACAGCAACGTAATATTTTATGGATTGTCGGATGTGTCATCA------------- 467
                      ***********************************************             

consensus_9132#0      AAATAGCTCACAGTCTGGGGTTTAAAAGGGCGAAATATTATTTGAAAGGATGGACGGAGT 522
consensus_9132#1      ------------------------------------------------------------
                                                                                  

consensus_9132#0      GGTCTACAATGCGTAATAAGTAAACAGTAACAAATTTAATGCATCTGTATTTGATGGTGT 582
consensus_9132#1      ------------------------------------------------------------
                                                                                  

consensus_9132#0      ACATAATCTACAATAAACTTAAAAACAGTTTGAGCCAAA 621
consensus_9132#1      ---------------------------------------