cluster # 9136

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 9136 cluster # 9136 Sequences # 8 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9136#0 length = 689 sequences # 5
consensus_9136#1 length = 188 sequences # 1

consensus_9136#2 length = 116 sequences # 1
consensus_9136#3 length = 115 sequences # 1

consensusID : consensus_9136#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 689
fasta sequence

                              [CTCCAGGCCAANAATTCGGCACGAGGTATCTAATCTCCTTTTACCATTGGTTACTTTCATTGGAAGTATTTCAATTTTATTATGGATTACTTATATTATACAAAATCATGATTGGAGTTTTTTAACATCAGTTTATTGGAATACTATCACTATAACTGATTGTACACCTCAAATGGGTATCTTTTGGTATATGTTTGTTGAAATGTTTGATCATTTCAGTGAATTTTTCACATGGGTTTTTCAACTACTTATTTTCACTATAGTACTTGGCTTGACAATTAAATTTAATCGTAATCCGTTATATATATGCCTTGTAATATCATTTATTATCAATGTATTACAACCATATCATAATATTGGAGAACTTGGCCTCTTAATATCTATTCTACCAATGTGGAGTCATCTTTTAAAACAAACCCGAATGTTATTTATTTCGTCGTGTTGTTTGTTGACTGCATTGATTCTTAGTCCATTATTTCATTACATCTGGTTGCAACCGGGTACAGGAAATGCGAATTTCTATTTCGCTGCATCATTGGTGCATGCGTTTGGACAGGTTATCCTTATTACAGATTTATTAAATGCTTATGGAAAATATGAATTTTTTTTACATCATGGTTCCAATCTTCAATTGAGTACTGGTGAAAAATTAAAATTAATTCAAGAATAAAAAAAAATATTTTTTTTCC]

[+] EMBL CD079433             [CTCCAGGCCAANAATTCGGCACGAGGTATCTAATCTCCTTTTACCATTGGTTACTTTCATTGGAAGTATTTCAATTTTATTATGGATTACTTATATTATACAAAATCATGATTGGAGTTTTTTAACATCAGTTTATTGGAATACTATCACTATAACTGATTGTACACCTCAAATGGGTATCTTTTGGTATATGTTTGTTGAAATGTTTGATCATTTCAGTGAATTTTTCACATGGGTTTTTCAACTACTTATTTTCACTATAGTACTTGGCTTGACAATTAAATTTAATCGTAATCCGTTATATATATGCCTTGCAATATCATTTATTATCAATGTATTACAACCATATCATAATATTGGAGAACTTGGCCTCTTAATATCTATTCTACCAATGTGGAGTCATCTTTTAAAACAAACCCGAATGTTATTTATTTCGTCGAGTTGTTTGTTGACTGCATTGATTCTTAGTCCATTATTTCATTACATCTGGTTGCAACCGGGTACAGGAAATGCGAATTTCTATTTCGCTGCATCATTGGTGCATGCGTTTGGACAGGTTATCCTTATTACAGATTTATTAAATGCTTATGGAAAATATGAATTTTTTTTACATCATGGTTCCAATCTTCAATTGAGTACTGGTGAAAAATTAAAATTAATTCAAGAATAAAAAAAAATATTTTTTTTCC]
[+] EMBL SMAA25616            [                                                                                                                                                                                                                                                                                         AATTTAATCGTAATCCGTTATATATATGCCTTGTAATATCATTTATTATCAATGTATTACAACCATATCATAATATTGGAGAACTTGGCCTCTTAATATCTATTCTACCAATGTGGAGTCATCTTTT AAACAAACCCGAATGTTATTTATTTCGTCGTGTTGTTTGTTGACTGCATTGATTCTTAGTCCATTATTTCATTACATCTGGTTGCAACCGGGTACAGGAAATGCGAATTTCTATTTCGCTGCATCATTGGTGCATGCGTTTGGACAGGTTAT CTTATTACAGATTTATTAAATGCTTATGG AAATATGAATTTTTTTTACATCATGGTTCCAATCTTCAATTGAGTACTGGTG AAAATTAAAATTAATTCAACGAT AAAAAAAATAT         ]
[+] EMBL SMAA25555            [                                                                                                                                                                                                                                                                                         AATTTAATCGTAATCCGTTATATATATGCCTTGTAATATCATTTATTATCAATGTATTACAACCATATCATAATATTGGAGAACTTGGCCTCTTAATATCTATTCTACCAATGTGGAGTCATCTTTTAAAACAAACCCGAATGTTATTTATTTCGTCGTGTTGTTTGTTGACTGCATTGATTCTTAGTCCATTATTTCATTACATCTGGTTGCAACCGGGTACAGGAAA                                                                                                                                                                                   ]
[-] EMBL CD073705             [                                                                                                                                                                                                                                                                                                                                                                                                               TCATCTTTTAAAACAAACCCGAATGTTATTTATTTCGTCGTGTTGTTTGTTGACTGCATTGATTCTTAGTCCATTATTTCATTACATCTGGTTGCAACCGGGTACAGGAAATGCGAATTTCTATTTCGCTGCATCATTGGTGCATGCGTTTGGACAGGTTATCCTTATTACAGATTTATTAAATGCTTATGGAAAATATGAATTTTTTTTACATCATGGTTCCAATTTTCAATTGAGTACTGGTGAAAAATTAAAATTAATTCAAGAATAAAAAAAAATAT         ]
[-] EMBL CD146031             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            AATGCGAATTTCTATTTCGCTGCATCATTGGTGCATGCGTTTGGACAGGTTATCCTTATTACAGATTTATTAAATGCTTATGGAAAATATGAATTTTTTTTACATCATGGTTCCAATC                                                               ]




>consensus_9136#0
CTCCAGGCCAANAATTCGGCACGAGGTATCTAATCTCCTTTTACCATTGGTTACTTTCAT
TGGAAGTATTTCAATTTTATTATGGATTACTTATATTATACAAAATCATGATTGGAGTTT
TTTAACATCAGTTTATTGGAATACTATCACTATAACTGATTGTACACCTCAAATGGGTAT
CTTTTGGTATATGTTTGTTGAAATGTTTGATCATTTCAGTGAATTTTTCACATGGGTTTT
TCAACTACTTATTTTCACTATAGTACTTGGCTTGACAATTAAATTTAATCGTAATCCGTT
ATATATATGCCTTGTAATATCATTTATTATCAATGTATTACAACCATATCATAATATTGG
AGAACTTGGCCTCTTAATATCTATTCTACCAATGTGGAGTCATCTTTTAAAACAAACCCG
AATGTTATTTATTTCGTCGTGTTGTTTGTTGACTGCATTGATTCTTAGTCCATTATTTCA
TTACATCTGGTTGCAACCGGGTACAGGAAATGCGAATTTCTATTTCGCTGCATCATTGGT
GCATGCGTTTGGACAGGTTATCCTTATTACAGATTTATTAAATGCTTATGGAAAATATGA
ATTTTTTTTACATCATGGTTCCAATCTTCAATTGAGTACTGGTGAAAAATTAAAATTAAT
TCAAGAATAAAAAAAAATATTTTTTTTCC

consensusID : consensus_9136#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 188
fasta sequence

                              [CTCGAGGCCAAAAATTCGGCACGAGGCCTTTTACCATTGGTTACTTTCATTGGAAGTATTTCAATTTTATTATGGATTAATTATATTATACAAAATCATGATTGGAGTTTTTTAACATCACTTTATTGGAATACTATCACTATAGACTGATTGAACACCTCATATGGGTATCTTTTGGTATATCGTCT]

[+] EMBL CD080054             [CTCGAGGCCAAAAATTCGGCACGAGGCCTTTTACCATTGGTTACTTTCATTGGAAGTATTTCAATTTTATTATGGATTAATTATATTATACAAAATCATGATTGGAGTTTTTTAACATCACTTTATTGGAATACTATCACTATAGACTGATTGAACACCTCATATGGGTATCTTTTGGTATATCGTCT]




>consensus_9136#1
CTCGAGGCCAAAAATTCGGCACGAGGCCTTTTACCATTGGTTACTTTCATTGGAAGTATT
TCAATTTTATTATGGATTAATTATATTATACAAAATCATGATTGGAGTTTTTTAACATCA
CTTTATTGGAATACTATCACTATAGACTGATTGAACACCTCATATGGGTATCTTTTGGTA
TATCGTCT

consensusID : consensus_9136#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 116
fasta sequence

                              [ATTTCAGTGAATTTTTCACATGGGTTTTTCAACTACTTATTCACTATAGTAGTTGGATTGACAATTAAATTTAATTCGTAACCGTATATATATTGCCTTGTAAATCATTTATATCA]

[+] EMBL AA931029             [ATTTCAGTGAATTTTTCACATGGGTTTTTCAACTACTTATTCACTATAGTAGTTGGATTGACAATTAAATTTAATTCGTAACCGTATATATATTGCCTTGTAAATCATTTATATCA]




>consensus_9136#2
ATTTCAGTGAATTTTTCACATGGGTTTTTCAACTACTTATTCACTATAGTAGTTGGATTG
ACAATTAAATTTAATTCGTAACCGTATATATATTGCCTTGTAAATCATTTATATCA

consensusID : consensus_9136#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 115
fasta sequence

                              [TTAATTTTGGACCAGTACTCAATTCTAGNTTGGGACCCRTGGTTGTAAAAAAAATTTCATATTTTCCATAAGCATTTAATAAATCTGTAATAAGGGATAACCTGTCCAAACGGAA]

[+] EMBL SMAA25554            [TTAATTTTGGACCAGTACTCAATTCTAGNTTGGGACCCRTGGTTGTAAAAAAAATTTCATATTTTCCATAAGCATTTAATAAATCTGTAATAAGGGATAACCTGTCCAAACGGAA]




>consensus_9136#3
TTAATTTTGGACCAGTACTCAATTCTAGNTTGGGACCCRTGGTTGTAAAAAAAATTTCAT
ATTTTCCATAAGCATTTAATAAATCTGTAATAAGGGATAACCTGTCCAAACGGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9136#0      CTCCAGGCCAANAATTCGGCACGAGGTATCTAATCTCCTTTTACCATTGGTTACTTTCAT 60
consensus_9136#2      ------------------------------------------------------------
consensus_9136#1      ------------------------------------------------------------
consensus_9136#3      ------------------------------------------------------------
                                                                                  

consensus_9136#0      TGGAAGTATTTCAATTTTATTATGGATTACTTATATTATACAAAATCATGATTGGAGTTT 120
consensus_9136#2      ------------------------------------------------------------
consensus_9136#1      ------------------------------------------------------------
consensus_9136#3      ------------------------------------------------------------
                                                                                  

consensus_9136#0      TTTAACATCAGTTTATTGGAATACTATCACTATAACTGATTGTACACCTCAAATGGGTAT 180
consensus_9136#2      ------------------------------------------------------------
consensus_9136#1      ------------------------------------------------------------
consensus_9136#3      ------------------------------------------------------------
                                                                                  

consensus_9136#0      CTTTTGGTATATGTTTGTTGAAATGTTTGATCATTTCAGTGAATTTTTCACATGGGTTTT 240
consensus_9136#2      --------------------------------ATTTCAGTGAATTTTTCACATGGGTTTT 28
consensus_9136#1      -----------------------------CTCGAGGCCAAAAATTCGGCACGAGGCCTTT 31
consensus_9136#3      ---------------------------------------------------TTAATTTTG 9
                                                                               ** 

consensus_9136#0      T-CAACTACTTATTTTCACTATAG------TACTTGGCTTGACAATTAAATTTAAT-CGT 292
consensus_9136#2      T-CAACTACTTATT--CACTATAG------TAGTTGGATTGACAATTAAATTTAATTCGT 79
consensus_9136#1      TACCATTGGTTACTTTCATTGGAAGTATTTCAATTTTATTATGGATTAATTATATTATAC 91
consensus_9136#3      GACCAGTACTCAATTCTAGNTTGGGACCCRTGGTTGTAAAAAAAATTTCATATTTTCCAT 69
                        * * *  * * *   *               **         ***   * *  *    

consensus_9136#0      AATCCGTTA-TATATATGCCTTGTAATATCA-TTTATTATCAATGTATTACAACCATATC 350
consensus_9136#2      AACCGTATA-TATAT-TGCCTTGTAA-ATCA-TTTAT-ATCA------------------ 116
consensus_9136#1      AAAATCATG-ATTGG-AGTTTTTTAACATCACTTTATTGGAATACTATCACTATAGACTG 149
consensus_9136#3      AAGCATTTAATAAATCTGTAATAAGGGATAA-CCTGTCCAAACGGAA------------- 115
                      **     *         *   *     ** *   * *    *                  

consensus_9136#0      ATAATATTGGAGAACTTGGCCTCTTAATATCTATTCTACCAATGTGGAGTCATCTTTTAA 410
consensus_9136#2      ------------------------------------------------------------
consensus_9136#1      ATTGAACACCTCATATGGGTATCTTTTGGTATATCGTCT--------------------- 188
consensus_9136#3      ------------------------------------------------------------
                                                                                  

consensus_9136#0      AACAAACCCGAATGTTATTTATTTCGTCGTGTTGTTTGTTGACTGCATTGATTCTTAGTC 470
consensus_9136#2      ------------------------------------------------------------
consensus_9136#1      ------------------------------------------------------------
consensus_9136#3      ------------------------------------------------------------
                                                                                  

consensus_9136#0      CATTATTTCATTACATCTGGTTGCAACCGGGTACAGGAAATGCGAATTTCTATTTCGCTG 530
consensus_9136#2      ------------------------------------------------------------
consensus_9136#1      ------------------------------------------------------------
consensus_9136#3      ------------------------------------------------------------
                                                                                  

consensus_9136#0      CATCATTGGTGCATGCGTTTGGACAGGTTATCCTTATTACAGATTTATTAAATGCTTATG 590
consensus_9136#2      ------------------------------------------------------------
consensus_9136#1      ------------------------------------------------------------
consensus_9136#3      ------------------------------------------------------------
                                                                                  

consensus_9136#0      GAAAATATGAATTTTTTTTACATCATGGTTCCAATCTTCAATTGAGTACTGGTGAAAAAT 650
consensus_9136#2      ------------------------------------------------------------
consensus_9136#1      ------------------------------------------------------------
consensus_9136#3      ------------------------------------------------------------
                                                                                  

consensus_9136#0      TAAAATTAATTCAAGAATAAAAAAAAATATTTTTTTTCC 689
consensus_9136#2      ---------------------------------------
consensus_9136#1      ---------------------------------------
consensus_9136#3      ---------------------------------------