cluster # 914

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Schistosoma mansoni
cluster # 914 cluster # 914 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_914#0 length = 374 sequences # 1

consensus_914#1 length = 265 sequences # 1

consensusID : consensus_914#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 374
fasta sequence

                              [AGATCGCCGTGCTTCAGCGACTGGCCGCGGCCAACAAGCAAGGTGGACGTCATTGAAAGCGGCCATCCCCGAGCCTGCTGATCACCAGCGGCACGCTCAACGCCGCAGGGAGGCCAATGAGCGTATCACGGGCCCGATGGAACCTTGAACAACCCGATCGGGTGAACACATTCACCGTCACCAGTCTGTCCATGATTGGCCGCCTCCAGGTTGCGGCCGGGGCAATCCCGGCCTATGTTCCAAGCGATACATTTATCTGCAACCAGCCGCCCCAGCCTGCTGTCCATCCAATACGAACGCCCCCCCGTAACGAGGTGACACATGCCGAACAACTCCCGCCCCGCCGTGCTCGAACTGATCGGCAATACGCCGCT]

[+] EMBL CD158874             [AGATCGCCGTGCTTCAGCGACTGGCCGCGGCCAACAAGCAAGGTGGACGTCATTGAAAGCGGCCATCCCCGAGCCTGCTGATCACCAGCGGCACGCTCAACGCCGCAGGGAGGCCAATGAGCGTATCACGGGCCCGATGGAACCTTGAACAACCCGATCGGGTGAACACATTCACCGTCACCAGTCTGTCCATGATTGGCCGCCTCCAGGTTGCGGCCGGGGCAATCCCGGCCTATGTTCCAAGCGATACATTTATCTGCAACCAGCCGCCCCAGCCTGCTGTCCATCCAATACGAACGCCCCCCCGTAACGAGGTGACACATGCCGAACAACTCCCGCCCCGCCGTGCTCGAACTGATCGGCAATACGCCGCT]




>consensus_914#0
AGATCGCCGTGCTTCAGCGACTGGCCGCGGCCAACAAGCAAGGTGGACGTCATTGAAAGC
GGCCATCCCCGAGCCTGCTGATCACCAGCGGCACGCTCAACGCCGCAGGGAGGCCAATGA
GCGTATCACGGGCCCGATGGAACCTTGAACAACCCGATCGGGTGAACACATTCACCGTCA
CCAGTCTGTCCATGATTGGCCGCCTCCAGGTTGCGGCCGGGGCAATCCCGGCCTATGTTC
CAAGCGATACATTTATCTGCAACCAGCCGCCCCAGCCTGCTGTCCATCCAATACGAACGC
CCCCCCGTAACGAGGTGACACATGCCGAACAACTCCCGCCCCGCCGTGCTCGAACTGATC
GGCAATACGCCGCT

consensusID : consensus_914#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 265
fasta sequence

                              [GCGACTGGCCGCGGCCAACAAGCAAGGTGGACGTCATTGAAAGCGGCCATCCCCGAGCCTGCTGATCACCAGCGGCACGCTCAACGCCGCAGGGAGGCCAATGAGCGTATCACGGGCCCGATCCTGCCCCCTTCGCGGGAGTGCGCCCCGACAGACGCAATGATCGTGTCCCGGGAAGTGGTGTAACTGAACCAACCGAAGGCGCCTTGCGGGCGAAAGAGGTTGGTCATCGTGGTTTTTGGCTAACGTTGAGTTTGCGAAGACC]

[+] EMBL CD164025             [GCGACTGGCCGCGGCCAACAAGCAAGGTGGACGTCATTGAAAGCGGCCATCCCCGAGCCTGCTGATCACCAGCGGCACGCTCAACGCCGCAGGGAGGCCAATGAGCGTATCACGGGCCCGATCCTGCCCCCTTCGCGGGAGTGCGCCCCGACAGACGCAATGATCGTGTCCCGGGAAGTGGTGTAACTGAACCAACCGAAGGCGCCTTGCGGGCGAAAGAGGTTGGTCATCGTGGTTTTTGGCTAACGTTGAGTTTGCGAAGACC]




>consensus_914#1
GCGACTGGCCGCGGCCAACAAGCAAGGTGGACGTCATTGAAAGCGGCCATCCCCGAGCCT
GCTGATCACCAGCGGCACGCTCAACGCCGCAGGGAGGCCAATGAGCGTATCACGGGCCCG
ATCCTGCCCCCTTCGCGGGAGTGCGCCCCGACAGACGCAATGATCGTGTCCCGGGAAGTG
GTGTAACTGAACCAACCGAAGGCGCCTTGCGGGCGAAAGAGGTTGGTCATCGTGGTTTTT
GGCTAACGTTGAGTTTGCGAAGACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_914#0      AGATCGCCGTGCTTCAGCGACTGGCCGCGGCCAACAAGCAAGGTGGACGTCATTGAAAGC 60
consensus_914#1      ----------------GCGACTGGCCGCGGCCAACAAGCAAGGTGGACGTCATTGAAAGC 44
                                     ********************************************

consensus_914#0      GGCCATCCCCGAGCCTGCTGATCACCAGCGGCACGCTCAACGCCGCAGGGAGGCCAATGA 120
consensus_914#1      GGCCATCCCCGAGCCTGCTGATCACCAGCGGCACGCTCAACGCCGCAGGGAGGCCAATGA 104
                     ************************************************************

consensus_914#0      GCGTATCACGGGCCCGATGGAACCTTGAACAACCCGATCGGGTGAACACATTCACCGTCA 180
consensus_914#1      GCGTATCACGGGCCCGAT-----CCTGC----CCCCTTCGCGGGAGTGCGCCC-----CG 150
                     ******************     * **     ***  *** * **   *   *     * 

consensus_914#0      CCAGTCTGTCCATGATTGGCCGCCTCCAGGT--TGCGGCCGGGGCAATCCCGGCCTATGT 238
consensus_914#1      ACAGACG--CAATGATCGTGTCCCGGGAAGTGGTGTAACTGAACCAACCGAAGGC-GCCT 207
                      *** *   * ***** *    **   * **  **   * *   *** *   * *    *

consensus_914#0      TCCAAGCGATACATTTATCTGCAACCAGCCGCCCCAGCCTGCTGTCCATCCAATACGAAC 298
consensus_914#1      TGCGGGCGAAAGA--GGTTGGTCATC-GTGGTTTTTGGCTAACGTTGAGTT--TGCGAAG 262
                     * *  **** * *    *  *  * * *  *     * **   **  *     * **** 

consensus_914#0      GCCCCCCCGTAACGAGGTGACACATGCCGAACAACTCCCGCCCCGCCGTGCTCGAACTGA 358
consensus_914#1      ACC--------------------------------------------------------- 265
                      **                                                         

consensus_914#0      TCGGCAATACGCCGCT 374
consensus_914#1      ----------------