cluster # 9140

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Schistosoma mansoni
cluster # 9140 cluster # 9140 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9140#0 length = 1177 sequences # 2

consensus_9140#1 length = 702 sequences # 6

consensusID : consensus_9140#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1177
fasta sequence

                              [GAAAAATCGAGTTACTTTGTGCTTGTATTATCTTTTCGAAAGCAGGTGCTATCACTCAATATGCGTATTGGTTTTTTAATGCGTATAAAGATGTATAATCCCTTATGAAAAATAAGTATTTAAAGCCTTGTATCTTCAACTTCTAGGGTCATATGATTGAGATTAGAATTCACATAAACAAATATAAGCAATGTTGTTGTTCAAATAGTTTTTCTATCTTAATTGACCACAATCTATGCTGTATGAAAGGGGTTTATGATGTTAATCTGGGAATACAACTTGTTTGTTCTATACCGATCATTGTTTGTCCATAATATTATTTACTTTAAATATTCCGGTTTCAGACTTCTCGAAATTATTCGCCTACCAAGTGGCATAAATTCCACTCTGATTGGCTAGCAAAGCATCCTAACTGTGTTCATTCACAAAATAAAGATGAAACACAAAATGTCAAACCAGAAATAAACCTTGAGACTGAGGAAGTAAGAAGTTCGGCTGCCAGTAGCGGAGTAGAAACAATTATTCTAGAAAAGCCTATTCACGAAAAATTAGATATCGACATTAATGACAACCACTTTTTTGGCGACGTACAAAGCACTTANACTGTCANATATTCTAATTAACAATGTGACGATCCGAAGATTNTACACCCTCANNAGGACANAATGCTTCAATAAACATTTCTATTTTACGTTGTAAATATGTTTTCTAGCTTAACTAACAAACTGACCAACCATCAATTTAATTTATACATGTACATACAATATTACTTATTATAGTGCGAGCAGTCCATGTGTATTTGCTTTTTTACCACAATTATCACCACAATGACGATAATCTCCAATTTATTAATTCATTCTTCACCTCGAAAGTGTTTTGTATCCTTTTGTTTTCTGTTTATTCAATGATATGCTCTGTATGTATACATATACCACTTATTATACACATAATCCAGACTGGTTCTGCTCTTATTTTTATTTTGTCTAAATGAAATCCACATACATGCATTGTATTATTGTTTGTTATCATTCATACACTACTACTAAATGTGGACGCTCTCTCAGTTTTTACAAATAATAGTGATACCGACCTGTTGAGTAATTTGTGCTATTTTGTTACATTTGGATAGATATTGTAATATTTCATTTCTATCAAATTTAATATGTACCCCAAACTT]

[+] EMBL CD079325             [GAAAAATCGAGTTACTTTGTGCTTGTATTATCTTTTCGAAAGCAGGTGCTATCACTCAATATGCGTATTGGTTTTTTAATGCGTATAAAGATGTATAATCCCTTATGAAAAATAAGTATTTAAAGCCTTGTATCTTCAACTTCTAGGGTCATATGATTGAGATTAGAATTCACATAAACAAATATAAGCAATGTTGTTGTTCAAATAGTTTTTCTATCTTAATTGACCACAATCTATGCTGTATGAAAGGGGTTTATGATGTTAATCTGGGAATACAACTTGTTTGTTCTATACCGATCATTGTTTGTCCATAATATTATTTACTTTAAATATTCCGGTTTCAGACTTCTCGAAATTATTCGCCTACCAAGTGGCATAAATTCCACTCTGATTGGCTAGCAAAGCATCCTAACTGTGTTCATTCACAAAATAAAGATGAAACACAAAATGTCAAACCAGAAATAAACCTTGAGACTGAGGAAGTAAGAAGTTCGGCTGCCAGTAGCGGAGTAGAAACAATTATTCTAGAAAAGCCTATTCACGAAAAATTAGATATCGACATTAATGACAACCACTTTTTTGGCGACGTACAAAGCACTTANACTGTCANATATTCTAATTAACAATGTGACGATCCGAAGATTNTACACCCTCANNAGGACANAATGCTTCAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CD073602             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GATATCGACATTAATGACAACCACTTTTTTGGCGACGTACAAAGCACTTAAACTGTCAAATATTCTAATTAACAATGTGACGATCCGAAGATTTTACACCCTCAAAAGGACAAAATGCTTCAATAAACATTTCTATTTTACGTTGTAAATATGTTTTCTAGCTTAACTAACAAACTGACCAACCATCAATTTAATTTATACATGTACATACAATATTACTTATTATAGTGCGAGCAGTCCATGTGTATTTGCTTTTTTACCACAATTATCACCACAATGACGATAATCTCCAATTTATTAATTCATTCTTCACCTCGAAAGTGTTTTGTATCCTTTTGTTTTCTGTTTATTCAATGATATGCTCTGTATGTATACATATACCACTTATTATACACATAATCCAGACTGGTTCTGCTCTTATTTTTATTTTGTCTAAATGAAATCCACATACATGCATTGTATTATTGTTTGTTATCATTCATACACTACTACTAAATGTGGACGCTCTCTCAGTTTTTACAAATAATAGTGATACCGACCTGTTGAGTAATTTGTGCTATTTTGTTACATTTGGATAGATATTGTAATATTTCATTTCTATCAAATTTAATATGTACCCCAAACTT]




>consensus_9140#0
GAAAAATCGAGTTACTTTGTGCTTGTATTATCTTTTCGAAAGCAGGTGCTATCACTCAAT
ATGCGTATTGGTTTTTTAATGCGTATAAAGATGTATAATCCCTTATGAAAAATAAGTATT
TAAAGCCTTGTATCTTCAACTTCTAGGGTCATATGATTGAGATTAGAATTCACATAAACA
AATATAAGCAATGTTGTTGTTCAAATAGTTTTTCTATCTTAATTGACCACAATCTATGCT
GTATGAAAGGGGTTTATGATGTTAATCTGGGAATACAACTTGTTTGTTCTATACCGATCA
TTGTTTGTCCATAATATTATTTACTTTAAATATTCCGGTTTCAGACTTCTCGAAATTATT
CGCCTACCAAGTGGCATAAATTCCACTCTGATTGGCTAGCAAAGCATCCTAACTGTGTTC
ATTCACAAAATAAAGATGAAACACAAAATGTCAAACCAGAAATAAACCTTGAGACTGAGG
AAGTAAGAAGTTCGGCTGCCAGTAGCGGAGTAGAAACAATTATTCTAGAAAAGCCTATTC
ACGAAAAATTAGATATCGACATTAATGACAACCACTTTTTTGGCGACGTACAAAGCACTT
ANACTGTCANATATTCTAATTAACAATGTGACGATCCGAAGATTNTACACCCTCANNAGG
ACANAATGCTTCAATAAACATTTCTATTTTACGTTGTAAATATGTTTTCTAGCTTAACTA
ACAAACTGACCAACCATCAATTTAATTTATACATGTACATACAATATTACTTATTATAGT
GCGAGCAGTCCATGTGTATTTGCTTTTTTACCACAATTATCACCACAATGACGATAATCT
CCAATTTATTAATTCATTCTTCACCTCGAAAGTGTTTTGTATCCTTTTGTTTTCTGTTTA
TTCAATGATATGCTCTGTATGTATACATATACCACTTATTATACACATAATCCAGACTGG
TTCTGCTCTTATTTTTATTTTGTCTAAATGAAATCCACATACATGCATTGTATTATTGTT
TGTTATCATTCATACACTACTACTAAATGTGGACGCTCTCTCAGTTTTTACAAATAATAG
TGATACCGACCTGTTGAGTAATTTGTGCTATTTTGTTACATTTGGATAGATATTGTAATA
TTTCATTTCTATCAAATTTAATATGTACCCCAAACTT

consensusID : consensus_9140#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 702
fasta sequence

                              [TCCGAGTATTCAAAAATAATCTCACACATAAAGAGTTATTCCGTGATACATTTTCAAGTGATTGTATGCATTTCACTGAGCGTTTGGATTCAAGAGTTACTCGTAATCACAAAATTAATTGGTCCGTCGGTTCCTACGGGATTTTCATTCGATATCGTAGACGAACTTCTCGAAATTATTCGCCTACCAAGTGGCATAAATTCCACTCTGATTGGCTAGCAAAGCATCCTAACTGTGTTCATTCACAAAATAAAGATGAAACACAAAATGTCAAACCAGAAATAAACCTTGAGACTGAGGAAGTAAGAAGTTCGGCTGCCAGTAGCGGAGTAGAAACAATTATTCTAGAAAAGCCTATTCACGAAAAATTAGATATCGACATTAATGACAACCACTTTTTTGGCGACGTACAAAGCACTTAAACTGTCAAATATTCTAATTAACAATGTGACGATCCGAAGATTTTACACCCTCAAAAGGACAAAATGCTTCAATAAACATTTCTATTTTACGTTGTAAATATGTTTTCTAGCTTAACTAACAAACTGACCAACCATCAATTTAATTTATACATGTACATACAATATTACTTATTATAGTGCGAGCATTCCATGTGTATTTGCTTTTTTACCACAATTATCACCACAATGACGATAATCTCCAATTTATTAATTCATTCTTCACCTCGAAAGGGNTNTGGAT]

[+] EMBL AI067235             [TCCGAGTATTCAAAAATAATCTCACACATAAAGAGTTATTCCGTGATACATTTTCAAGTGATTGTATGCATTTCACTGAGCGTTTGGATTCAAGAGTTACTCGTAATCACAAAATTAATTGGTCCGTCGGTTCCTACGGGATTTTCATTCGATATCGTAGACGAACTTCTCGAAATTATTCGCCTACCAAGTGGCATAAATTCCACTCTGATTGGCTAGCAAAGCATCCTAACTGTGTTCATTCACAAAATAAAGATGAAACACATAATGTCAAACCAGAAATAAACCTTGAGACTGAGGAAGTAAGAAGTTCGGCTGCCAGTAGCGGAGTAGAAACAATTATTCTAGAAAAGCCTATTCACGAAAAATTAGATATCGACATTAATGACAACCACTTTTTTGGCGACGTACAAAGCACTTAAACTGTCAAATATTCTAATTAACAATGTGACGATCCGAAGATTTTACACCCTCAATAGGACAAAATGCTTCAATACACATTTCTAATTTAAGTTGTCAATg                                                                                                                                                                                    ]
[+] EMBL AI067922             [      TATTCAAAAATAATCTCACACATAAAGAGTTATTCCGTGATACATTTTCAAGTGATTGTATGCATTTCACTGAGCGTTTGGATTCAAGAGTTACTCGTAATCACAAAATTAATTGGTCCGTCGGTTCCTACGGGATTTTCATTCGATATCGTAGACGAACTTCTCGAAATTATTCGCCTACCAAGTGGCATAAATTCCACTCTGATTGGCTAGCAAAGCATCCTAACTGTGTTCATTCACAAAATAAAGATGAAACACAAAATGTCAAACCAGAAATAAACCTTGAGACTGAGGAAGTAAGAAGTTCGGCTGCCAGTAGCGGAGTAGAAACAATTATTCTAGAAAAGCCTATTCACGAAAAATTAGATATCGACATTAATGACAACCACTTTTTTGGCGACGTACAAAGCACTTAAACTGTCAAATATTCTAATTAACAATGTGACGATCCGAAGATTTTACACCCTCAAAAGGACAAAATGCTTCAATAAACATTTCTATTTTACGTTGTAAATATGTTTTCTAGCTTAACTAACATACTGACCAACCATCAATTTAATTTATACATGTACATACAATATTACTTATTATAGTGCGAGCATTCCATGTGTATTTGCTTTTTTACCACAA                                                                  ]
[+] EMBL AI067734             [                      CACACATAAAGAGTTATTCCGTGATACATTTTCAAGTGATTGTATGCATTTCACTGAGCGTTTGGATTCAAGAGTTACTCGTAATCACAAAATTAATTGGTCCGTCGGTTCCTACGGGATTTTCATTCGATATCGTAGACGAACTTCTCGAAATTATTCGCCTACCAAGTGGCATAAATTCCACTCTGATTGGCTAGCAAAGCATCCTAACTGTGTTCATTCACAAAATAAAGATGAAACACAAAATGTCAAACCAGAAATAAACCTTGAGACTGAGGAAGTAAGAAGTTCGGCTGCCAGTAGCGGAGTAGAAACAATTATTCTAGAAAAGCCTATTCACGAAAAATTAGATATCGACATTAATGACAACCACTTTTTTGGCGACGTACAAA                                                                                                                                                                                                                                                                                                ]
[+] EMBL AI068253             [                          CATAAAGAGTTATTCCGTGATACATTTTCAAGTGATTGTATGCATTTCACTGAGCGTTTGGATTCAAGAGTTACTCGTAATCACAAAATTAATTGGTCCGTCGGTTCCTACGGGATTTTCATTCGATATCGTAGACGAACTTCTCGAAATTATTCGCCTACCAAGTGGCATAAATTCCACTCTGATTGGCTAGCAAAGCATCCTAACTGTGTTCATTCACAAAATAAAGATGAAACACAAAATGTCAAACCAGAAATAAACCTTGAGACTGAGGAAGTAAGAAGTTCGGCTGCCAGTAGCGGAGTAGAAACAATTATTCTAGAAAAGCCTATTCACGAAAAATTAGATATCGACATTAATGACAACCACTTTTTTGGCGACGTACAAAGCACTTAAACTGTCAAATATTCTAATTAACAATGTGACGATCCGAAGAT                                                                                                                                                                                                                                               ]
[+] EMBL CD079235             [                                                                            TGAGCGTTTGGATTCAAGAGTTACTCGTAATCACAAAATTAATTGGTCCGTCGGTTCCTACGGGATTTTCATTCGATATCGTAGACGAACTTCTCGAAATTATTCGCCTACCAAGTGGCATAAATTCCACTCTGATTGGCTAGCAAAGCATCCTAACTGTGTTCATTCACAAAATAAAGATGAAACACAAAATGTCAAACCAGAAATAAACCTTGAGACTGAGGAAGTAAGAAGTTCGGCTGCCAGTAGCGGAGTAGAAACAATTATTCTAGAAAAGCCTATTCACGAAAAATTAGATATCGACATTAATGACAACCACTTTTTTGGCGACGTACAAAGCACTTAAACTGTCAAATATTCTAATTAACAATGTGACGATCCGAAGATTTTACACCCTCAAAAGGACAAAATGCTTCAATAAACATTTCTATTTTACGTTGTAAATATGTTTTCTAGCTTAACTAACAAACTGACCAACCATCAATTTAATTTATACATGTACATACAATATTACTTATTATAGTGCGAGCAGTCCATGTGTATTTGCTTTTTTACCACAATTATCACCACAATGACGATAATCTCCAATTTATTAATTCATTCTTCACCTCGAAAGGGNTNTGGAT]
[+] EMBL CD133106             [                                                                                                                                ttgTCCT GGGGATTTTCATTCGATATCGTAGACGAACTTCTCG AATTATTCGCCTACCAAGTGGCATAAATTCCACTCTGATTGGCTAGCAAAGCATCCTAACTGTGTTCATTCACAAAATAAAGATGAAACACAAAATGTCAAACCAGAAATAAACCTTGAGACTGAGGAAGTAAGAAGTTCGGCTGCCAGTAGCGGAGTAGAAACAATTATTCTACAAAAGCCTATTCACGAAAAATTAGATATCGACATTAATGACAACCACTTTTTTGGCGACGTACAAAGCACTTAAACTGTCAAATATTCTAATTAACAATGTGACGATCCGAAGATTTTACACCCTCAAAAGGACAAAATGCTTCAATAAACATTTCTATTTTACGTTGTAAATATGTGTTCTAGCTTAACTAACAAACTGACCAACCATCAATTTAATTTATACATGTACATACAATATTACTTATTATA                                                                                                        ]




>consensus_9140#1
TCCGAGTATTCAAAAATAATCTCACACATAAAGAGTTATTCCGTGATACATTTTCAAGTG
ATTGTATGCATTTCACTGAGCGTTTGGATTCAAGAGTTACTCGTAATCACAAAATTAATT
GGTCCGTCGGTTCCTACGGGATTTTCATTCGATATCGTAGACGAACTTCTCGAAATTATT
CGCCTACCAAGTGGCATAAATTCCACTCTGATTGGCTAGCAAAGCATCCTAACTGTGTTC
ATTCACAAAATAAAGATGAAACACAAAATGTCAAACCAGAAATAAACCTTGAGACTGAGG
AAGTAAGAAGTTCGGCTGCCAGTAGCGGAGTAGAAACAATTATTCTAGAAAAGCCTATTC
ACGAAAAATTAGATATCGACATTAATGACAACCACTTTTTTGGCGACGTACAAAGCACTT
AAACTGTCAAATATTCTAATTAACAATGTGACGATCCGAAGATTTTACACCCTCAAAAGG
ACAAAATGCTTCAATAAACATTTCTATTTTACGTTGTAAATATGTTTTCTAGCTTAACTA
ACAAACTGACCAACCATCAATTTAATTTATACATGTACATACAATATTACTTATTATAGT
GCGAGCATTCCATGTGTATTTGCTTTTTTACCACAATTATCACCACAATGACGATAATCT
CCAATTTATTAATTCATTCTTCACCTCGAAAGGGNTNTGGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9140#0      GAAAAATCGAGTTACTTTGTGCTTGTATTATCTTTTCGAAAGCAGGTGCTATCACTCAAT 60
consensus_9140#1      ------------------------------------------------------------
                                                                                  

consensus_9140#0      ATGCGTATTGGTTTTTTAATGCGTATAAAGATGTATAATCCCTTATGAAAAATAAGTATT 120
consensus_9140#1      ------------------------------------------------------------
                                                                                  

consensus_9140#0      TAAAGCCTTGTATCTTCAACTTCTAGGGTCATATGATTGAGATTAGAATTCACATAAACA 180
consensus_9140#1      ------------------------------------------------TCCGAGTATTCA 12
                                                                      * *   **  **

consensus_9140#0      AATATAAGCAATGTTGTTGTTCAAATAGTTTTTCTATCTTAATTGACCACAATCTATGCT 240
consensus_9140#1      AAAATAATC-----TCACACATAAAGAGTTATTCCGTGATACAT--TTTCAAGTGAT--T 63
                      ** **** *     *       *** **** ***  *  **  *     ***   **  *

consensus_9140#0      GTATGAAAGGGGTTTATGATGTTAATCTGGGAATACAACTTGTTTGTTCTATACCGATCA 300
consensus_9140#1      GTATGCATTTCACTGAGCGTTTGGATTCAAGAGTT--ACTCGTAATCACAAAATTAATTG 121
                      ***** *      * *   * *  **    ** *   *** **     * * *   **  

consensus_9140#0      TT--GTTTGTCCATAATATTATTTACTTTAAATATTCCGGTTTCAGACTTCTCGAAATTA 358
consensus_9140#1      GTCCGTCGGTTCCTA-CGGGATTTTCATTCGATATCGTAGA--CGAACTTCTCGAAATTA 178
                       *  **  ** * **     **** * **  ****    *   *  **************

consensus_9140#0      TTCGCCTACCAAGTGGCATAAATTCCACTCTGATTGGCTAGCAAAGCATCCTAACTGTGT 418
consensus_9140#1      TTCGCCTACCAAGTGGCATAAATTCCACTCTGATTGGCTAGCAAAGCATCCTAACTGTGT 238
                      ************************************************************

consensus_9140#0      TCATTCACAAAATAAAGATGAAACACAAAATGTCAAACCAGAAATAAACCTTGAGACTGA 478
consensus_9140#1      TCATTCACAAAATAAAGATGAAACACAAAATGTCAAACCAGAAATAAACCTTGAGACTGA 298
                      ************************************************************

consensus_9140#0      GGAAGTAAGAAGTTCGGCTGCCAGTAGCGGAGTAGAAACAATTATTCTAGAAAAGCCTAT 538
consensus_9140#1      GGAAGTAAGAAGTTCGGCTGCCAGTAGCGGAGTAGAAACAATTATTCTAGAAAAGCCTAT 358
                      ************************************************************

consensus_9140#0      TCACGAAAAATTAGATATCGACATTAATGACAACCACTTTTTTGGCGACGTACAAAGCAC 598
consensus_9140#1      TCACGAAAAATTAGATATCGACATTAATGACAACCACTTTTTTGGCGACGTACAAAGCAC 418
                      ************************************************************

consensus_9140#0      TTANACTGTCANATATTCTAATTAACAATGTGACGATCCGAAGATTNTACACCCTCANNA 658
consensus_9140#1      TTAAACTGTCAAATATTCTAATTAACAATGTGACGATCCGAAGATTTTACACCCTCAAAA 478
                      *** ******* ********************************** **********  *

consensus_9140#0      GGACANAATGCTTCAATAAACATTTCTATTTTACGTTGTAAATATGTTTTCTAGCTTAAC 718
consensus_9140#1      GGACAAAATGCTTCAATAAACATTTCTATTTTACGTTGTAAATATGTTTTCTAGCTTAAC 538
                      ***** ******************************************************

consensus_9140#0      TAACAAACTGACCAACCATCAATTTAATTTATACATGTACATACAATATTACTTATTATA 778
consensus_9140#1      TAACAAACTGACCAACCATCAATTTAATTTATACATGTACATACAATATTACTTATTATA 598
                      ************************************************************

consensus_9140#0      GTGCGAGCAGTCCATGTGTATTTGCTTTTTTACCACAATTATCACCACAATGACGATAAT 838
consensus_9140#1      GTGCGAGCATTCCATGTGTATTTGCTTTTTTACCACAATTATCACCACAATGACGATAAT 658
                      ********* **************************************************

consensus_9140#0      CTCCAATTTATTAATTCATTCTTCACCTCGAAAGTGTTTTGTATCCTTTTGTTTTCTGTT 898
consensus_9140#1      CTCCAATTTATTAATTCATTCTTCACCTCGAAAGGGNTNTGGAT---------------- 702
                      ********************************** * * ** **                

consensus_9140#0      TATTCAATGATATGCTCTGTATGTATACATATACCACTTATTATACACATAATCCAGACT 958
consensus_9140#1      ------------------------------------------------------------
                                                                                  

consensus_9140#0      GGTTCTGCTCTTATTTTTATTTTGTCTAAATGAAATCCACATACATGCATTGTATTATTG 1018
consensus_9140#1      ------------------------------------------------------------
                                                                                  

consensus_9140#0      TTTGTTATCATTCATACACTACTACTAAATGTGGACGCTCTCTCAGTTTTTACAAATAAT 1078
consensus_9140#1      ------------------------------------------------------------
                                                                                  

consensus_9140#0      AGTGATACCGACCTGTTGAGTAATTTGTGCTATTTTGTTACATTTGGATAGATATTGTAA 1138
consensus_9140#1      ------------------------------------------------------------
                                                                                  

consensus_9140#0      TATTTCATTTCTATCAAATTTAATATGTACCCCAAACTT 1177
consensus_9140#1      ---------------------------------------