cluster # 9151

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Schistosoma mansoni
cluster # 9151 cluster # 9151 Sequences # 8 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9151#0 length = 458 sequences # 6

consensus_9151#1 length = 419 sequences # 1
consensus_9151#2 length = 252 sequences # 1

consensusID : consensus_9151#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 458
fasta sequence

                              [AGTAAATAAAAAGCACGTTCGCAGTGTCGAATTCCAAGTTGTGAGCAAGGATGACTAGACGTATGTCTCAGGGAATTTTTGTTGTTCTCGAAGGAGCAGATCGGGTAG-GAAAAACAACACAAGCATCACTCCTAGCTAAAGCTTTGTCGGAAATTACACAAAGAGAGACTCTGTCTGTCAAATTCCCAGATCGTGATACTCCTCTGGGACATCACCTGGATTCGTATTTAAGTGGGATTGGTGATATTAATAAACACGCATTACACTTATTGTTCACTGCGAATAGATGGGAAAGGCAAGCTGAGATTCGGAAAGCCATTTCAAATGGAATACCTGTTGTAGCAGACAGATATATATATTCTGGGATCGCTTACACAGCTGCTAAAGCTCCACCAACGCCAAACTGGGAATGGTGTTGGGAAATGGAAAAAGGCCTTGTAGAACCGGATTTGGTGATA]

[+] EMBL CD133323             [AGTAAATAAAAAGCACGTTCGCAGTGTCGAATTCCAAGTTGTGAGCAAGGATGACTAGACGTATGTCTCAGGGAATTTTTGTTGTTCTCGAAGGAGCAGATCGGGTAG GAAAAACAACACAAGCATCACTCCTAGCTAAAGCTTTGTCGGAAATTACACAAAGAGAGACTCTGTCTGTCAAATTCCCAGATCGTGATACTCCTCTGGGACATCACCTGGATTCGTATTTAAGTGGGATTGGTGATATTAATAAACACGCATTACACTTATTGTTCACTGCGAATAGATGGGAAAGGCAAGCTGAGATTCGGAAAGCCATTTCAAATGGAATACCTGTTGTAGCAGACAGATATATATATTCTGGGATCGCTTACACAGCTGCTAAAGCTCCACCAACGCCAAACTGGGAATGGTGTTGGGAAATGGAAAAAGGCCTTGTAGAACCGGATTTGGTGAT ]
[+] EMBL CD189722             [       AAAGAGCACGTTCGCAGTGTCGAATTCCAAGTTGTGAGCAAGGATGACTAGACGTATGTCTCAGGGAATTTTTGTTGTTCTCGAAGGAGCAGATCGGGTAGNGAAAAACAACACAAGCATCACTCCTAGCTAAAGCTTTGTCGGAAATTACACAAAGAGAGACTCTGTCTGTCAAATTCCCAGATCGTGATACTCCTCTGGGACATCACCTGGATTCGTATTTAAGTGGGATTGGTGATATTAATAAACACGCATTACACTTATTGTTCACTGCGAATAGATGGGAAAGGCAAGCTGAGATTCGGAAAGCCATTTCAAATGGAATA                                                                                                                              ]
[-] EMBL CD132993             [        AAAAGCACGTTCGCAGTGTCGAATTCCAAGTTGTGAGCAAGGATGACTAGACGTATGTCTCAGGGAATTTTTGTTGTTCTCGAAGGAGCAGATCGGGTAG GAAAAACAACACAAGCATCACTCCTAGCTAAAGCTTTGTCGGAAATTACACAAAGAGAGACTCTGTCTGTCAAATTCCCAGATCGTGATACTCCTCTGGGACATCACCTGGATTCGTATTTAAGTGGGATTGGTGATATTAATAAACACGCATTACACTTATTGTTCACTGCGAATAGATGGGAAAGGCAAGCTGAGATTCGGAAAGCCATTCCAAATGGAATACCTGTTGTAGCAGACAGATATATATATTCTGGGATCGCTTACACAGCTGCTAAAGCTCCACCAACGCCAAACTGGGAATGGTGTTGGGAAATGGAAAAAGGCCTTGTAGAACCGGATTTGGTGATA]
[-] EMBL CD133279             [        AAAAGCACGTTCGCAGTGTCGAATTCCAAGTTGTGAGCAAGGATGACTAGACGTATGTCTCAGGGAATTTTTGTTGTTCTCGAAGGAGCAGATCGGGTAG GAAAAACAACACAAGCATCACTCCTAGCTAAAGCTTTGTCGGAAATTACACAAAGAGAGACTCTGTCTGTCAAATTCCCAGATCGTGATACTCCTCTGGGACATCACCTGGATTCGTATTTAAGTGGGATTGGTGATATTAATAAACACGCATTACACTTATTGTTCACTGCGAATAGATGGGAAAGGCAAGCTTAGATTCGGAAAGCCATTTCAAATGGAATACCTGTTGTAGCAGACAGATATATATATTTTGGGATCGCTTACACAGGTGGTAAAGCTCCACCCACGCCAAACTGGGAATGGTGTTGGGAAAT                                  ]
[-] EMBL CD133235             [        AAAAGCACGTTCGCAGTGTCGAATTCCAAGTTGTGAGCAAGGATGACTAGACGTATGTCTCAGGGAATTTTTGTTG TCTCGAAGGAGCAGATCGGGTAG GAAAAACAACACAAGCATCTCTCCTAGGTAAAGCTTTGTCGGAAATTACACAAAGAGAGACTCTGTCTGTCAAATTCCCAGATCGTGATACTCCTCTGGGACATCACCTGGATTCGTATTTAAGTGGGATTGGTGATATTAATAAACACGCATTACACTTATTGTTCACTGCGAATAGATGGGAAAGGCAAGCTGAGATTCGGAAAGCCATTTCAAATGGAATACCT                                                                                                                           ]
[+] EMBL CD142035             [                                                                                                                     ACACAAGCATCACTCCTAGCTAAAGCTTTGTCGGAAATTACACAAAGAGAGACTCTGTCTGTCAAATTCCCAGATCGTGATACTCCTCTGGGACATCACCTGGATTCGTATTTAAGTGGGATTGGTGATATTAATAAACACGCATTACACTTATTGTTCACTGCGAATAGATGGGAAAGGCAAGCTGAGATTCGGAAAGCCATTTCAAATGGAATACCTGTTGTAGCAGACAGATATATATATTCTGGGATCGCTTACACAGCTGCTAAAGCTCCACCAACGCCAAACTGGGAATGGTGTTGGGAAA                                   ]




>consensus_9151#0
AGTAAATAAAAAGCACGTTCGCAGTGTCGAATTCCAAGTTGTGAGCAAGGATGACTAGAC
GTATGTCTCAGGGAATTTTTGTTGTTCTCGAAGGAGCAGATCGGGTAGGAAAAACAACAC
AAGCATCACTCCTAGCTAAAGCTTTGTCGGAAATTACACAAAGAGAGACTCTGTCTGTCA
AATTCCCAGATCGTGATACTCCTCTGGGACATCACCTGGATTCGTATTTAAGTGGGATTG
GTGATATTAATAAACACGCATTACACTTATTGTTCACTGCGAATAGATGGGAAAGGCAAG
CTGAGATTCGGAAAGCCATTTCAAATGGAATACCTGTTGTAGCAGACAGATATATATATT
CTGGGATCGCTTACACAGCTGCTAAAGCTCCACCAACGCCAAACTGGGAATGGTGTTGGG
AAATGGAAAAAGGCCTTGTAGAACCGGATTTGGTGATA

consensusID : consensus_9151#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 419
fasta sequence

                              [TATTGTTTGTTAAAAATCAGCATTTGTCCTCTGCTTCATTTAATTCGATAGCTGATCAAATATTCTAGTAAATTAGACGGTTCACTATCACGAAATTCGTATACTATTACTACATATTTTAGACCTTTCATCTCAGGCTGTATATTTCATATTACGGTCTGATACCATCATTACTAATGTGATCTATTAGGATTCCAGCCAATATGCTTATTTATATCATGAAATTCTGGTCTTTTCCAGATGGGAAAGGCAAGCTGAGATTCGGAAAGCCATTTCAAATGGAATACCTGTTGTAGCAGACAGATATATATATTCTGGGATCGCTTACACAGCTGCTAAAGCTCCACCAACGCCAAACTGGGAATGGTGTTGGGAAATGGAAAAAGGCCTTGTAGAACCGGATTTGGTGATATGTTTAA]

[-] EMBL CD133452             [TATTGTTTGTTAAAAATCAGCATTTGTCCTCTGCTTCATTTAATTCGATAGCTGATCAAATATTCTAGTAAATTAGACGGTTCACTATCACGAAATTCGTATACTATTACTACATATTTTAGACCTTTCATCTCAGGCTGTATATTTCATATTACGGTCTGATACCATCATTACTAATGTGATCTATTAGGATTCCAGCCAATATGCTTATTTATATCATGAAATTCTGGTCTTTTCCAGATGGGAAAGGCAAGCTGAGATTCGGAAAGCCATTTCAAATGGAATACCTGTTGTAGCAGACAGATATATATATTCTGGGATCGCTTACACAGCTGCTAAAGCTCCACCAACGCCAAACTGGGAATGGTGTTGGGAAATGGAAAAAGGCCTTGTAGAACCGGATTTGGTGATATGTTTAA]




>consensus_9151#1
TATTGTTTGTTAAAAATCAGCATTTGTCCTCTGCTTCATTTAATTCGATAGCTGATCAAA
TATTCTAGTAAATTAGACGGTTCACTATCACGAAATTCGTATACTATTACTACATATTTT
AGACCTTTCATCTCAGGCTGTATATTTCATATTACGGTCTGATACCATCATTACTAATGT
GATCTATTAGGATTCCAGCCAATATGCTTATTTATATCATGAAATTCTGGTCTTTTCCAG
ATGGGAAAGGCAAGCTGAGATTCGGAAAGCCATTTCAAATGGAATACCTGTTGTAGCAGA
CAGATATATATATTCTGGGATCGCTTACACAGCTGCTAAAGCTCCACCAACGCCAAACTG
GGAATGGTGTTGGGAAATGGAAAAAGGCCTTGTAGAACCGGATTTGGTGATATGTTTAA

consensusID : consensus_9151#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 252
fasta sequence

                              [CTTTGTCGGAAATTACACAAAGAGAGACTCTGTCTGTCAAATTCCCAGATCGTGATACTCCTCTGGGACATCACCTGGATTCGTATTTAAGTGGGATTGGTGATATTAATAAACACGCATTACACTTATTGTTCACTGCGAATAGATGGGAAAGGCAAGCTGAGATTCGGAAAGCCATTTCAAATGGAATACCTGTTGTAGCAGACAGATATATATATTCTGGGAGCGCATCACCGGGCAGGGCGGAGGGAA]

[+] EMBL CD112798             [CTTTGTCGGAAATTACACAAAGAGAGACTCTGTCTGTCAAATTCCCAGATCGTGATACTCCTCTGGGACATCACCTGGATTCGTATTTAAGTGGGATTGGTGATATTAATAAACACGCATTACACTTATTGTTCACTGCGAATAGATGGGAAAGGCAAGCTGAGATTCGGAAAGCCATTTCAAATGGAATACCTGTTGTAGCAGACAGATATATATATTCTGGGAGCGCATCACCGGGCAGGGCGGAGGGAA]




>consensus_9151#2
CTTTGTCGGAAATTACACAAAGAGAGACTCTGTCTGTCAAATTCCCAGATCGTGATACTC
CTCTGGGACATCACCTGGATTCGTATTTAAGTGGGATTGGTGATATTAATAAACACGCAT
TACACTTATTGTTCACTGCGAATAGATGGGAAAGGCAAGCTGAGATTCGGAAAGCCATTT
CAAATGGAATACCTGTTGTAGCAGACAGATATATATATTCTGGGAGCGCATCACCGGGCA
GGGCGGAGGGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9151#0      AGTAAATAAAAAGCACGTTCGCAGTGTCGAATTCCAAGTTGTGAGCAAGGATGACTAGAC 60
consensus_9151#2      ------------------------------------------------------------
consensus_9151#1      ---------------------------------------------TATTGTTTGTTAAAA 15
                                                                                  

consensus_9151#0      GTATGTCTCAGGGAATTTTTGTTGTTCTCGAAGGAGCAGATCGGGTAGGAAAAACAACAC 120
consensus_9151#2      ------------------------------------------------------------
consensus_9151#1      ATCAGCATTTGTCCTCTGCTTCATTTAATTCGATAGCTGATCAAATATTCTAGTAAATTA 75
                                                                                  

consensus_9151#0      AAGCATCACTCCTAGCTAAAGCTTTGT-CGGAAATTACACAAAGAGAGACTCTGTCTGTC 179
consensus_9151#2      ---------------------CTTTGT-CGGAAATTACACAAAGAGAGACTCTGTCTGTC 38
consensus_9151#1      GACGGTTCACTATCACGAAATTCGTATACTATTACTACATATTTT-AGACCTTTCATCTC 134
                                              * * *    * **** *     ****  *   * **

consensus_9151#0      AAATTCCCAGATCGTGATACTCCTCTGGGACATCACCTGGATTCGTAT--TTAAGTGGGA 237
consensus_9151#2      AAATTCCCAGATCGTGATACTCCTCTGGGACATCACCTGGATTCGTAT--TTAAGTGGGA 96
consensus_9151#1      AGGCTGT-ATATT-TCATATTACGGTCTGATACCATCATTACTAATGTGATCTATTAGGA 192
                      *   *   * **  * *** * *  *  ** * ** *   * *  * *  *  * * ***

consensus_9151#0      TTGGTGATATTAATAAACACGCATTACACTTATTGTTCACTGCGAATAGATGGGAAAGGC 297
consensus_9151#2      TTGGTGATATTAATAAACACGCATTACACTTATTGTTCACTGCGAATAGATGGGAAAGGC 156
consensus_9151#1      TTCCAGCCAATA-TGCTTATTTATATCATGAAATTCTGGTCTTTTCCAGATGGGAAAGGC 251
                      **   *  * ** *    *   **  **   * *  *          *************

consensus_9151#0      AAGCTGAGATTCGGAAAGCCATTTCAAATGGAATACCTGTTGTAGCAGACAGATATATAT 357
consensus_9151#2      AAGCTGAGATTCGGAAAGCCATTTCAAATGGAATACCTGTTGTAGCAGACAGATATATAT 216
consensus_9151#1      AAGCTGAGATTCGGAAAGCCATTTCAAATGGAATACCTGTTGTAGCAGACAGATATATAT 311
                      ************************************************************

consensus_9151#0      ATTCTGGGATCGCTTACACAGCTGCTAAAGCTCCACCAACGCCAAACTGGGAATGGTGTT 417
consensus_9151#2      ATTCTGGGAGCGCAT---CACCGGGCAGGGCGGAGGGAA--------------------- 252
consensus_9151#1      ATTCTGGGATCGCTTACACAGCTGCTAAAGCTCCACCAACGCCAAACTGGGAATGGTGTT 371
                      ********* *** *   ** * *  *  **      **                     

consensus_9151#0      GGGAAATGGAAAAAGGCCTTGTAGAACCGGATTTGGTGATA------- 458
consensus_9151#2      ------------------------------------------------
consensus_9151#1      GGGAAATGGAAAAAGGCCTTGTAGAACCGGATTTGGTGATATGTTTAA 419