cluster # 9152

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Schistosoma mansoni
cluster # 9152 cluster # 9152 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9152#0 length = 411 sequences # 7

consensus_9152#1 length = 271 sequences # 1

consensusID : consensus_9152#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 411
fasta sequence

                              [GTCTAGTTTCTCCCTCCTGTTTTTGTTTATCAGCCATGAAATGCCCTTCATGCAATAAGGAGGTCTACTTTGCTGAGCGGGTCAATTCACTTGGAAAAGACTGGCATCGTCCGTGTTTGAAATGCGAAAAGTGCAAAAAAACGCTGACTGCGGGTTCCCACTGTG-AACATGATGGTAAACCCTATTGTCAGATTCC-ATGTTACCAAGCACTGTTTGGACCCAAAGGTTATGGGTCAGTGGCCAGCAGTCACGTCTACAAATAGATAACAAATTTGTCATTTCAAGTTTTGTTTATACATTCTACATGACTACTTTTGATGTCTCTTGTGAGACAATTCCAATAGATCGCTCCTTCAAGTACTTTTCAATTACTTGGTTTTGATGTTTTAACTTATAAAATAAACTCGCTGC]

[+] EMBL AW466246             [GTCTAGTTTCTCCCTCCTGTTTTTGTTTATCAGCCATGAAATGCCCTTCATGCAATAAGGAGGTCTACTTTGCTGAGCGGGTCAATTCACTTGGAAAAGACTGGCATCGTCCGTGTTTGAAATGCGAAAAGTGCAAAAAAACGCTGACTGCGGGTTCCCACTGTGAAACATGANGGTAAACCCAATTGTCANAATCCNAGTTTACCAAGCACTGT                                                                                                                                                                                                      ]
[+] EMBL SMAA18481            [                            ATCAGCCATGAAATGCCCTTCATGCAATAAGGAGGTCTACTTTGCTGAGCGGGTCAATTCACTTGGAAAAGACTGGCATCGTCCGTGTTTGAAATGCGAAAAGTGCAAAAAAACGCTGACTGCGGGTTCCCACTGTG AACATGATGGTAAACCCTATTGTCAGATTCC ATGTTACCAAGCACTGTTTGGACCCAAAGGTTATGGGTCAGTGGCCAGCAGTCACGTCTACAAATAGATAACAAATTTGTCATTTCAAGTTTTGTTTATACATTCTACATGACTACTTTTGATGTCTCTTGTGAGACAATTCCAATAGATCGCTCCTTCAAGTACTTTTCAATTACTTGGTTTTGATGTTTTAACTTATAAAATAAAC       ]
[+] EMBL AI975750             [                                 CCATGAAATGCCCTTCATGCAATAAGGAGGTCTACTTTGCTGAGCGGGTCAATTCACTTGGAAAAGACTGGCATCGTCCGTGTTTGAAATGCGAAAAGTGCAAAAAAACGCTGACTGCGGGTTCCCACTGTG AACATGATGGTAAACCCTATTGTCAGATTCC ATGTTACCAAGCACTGTTTGGACCCAAAGGTTATGGGTCAGTGGCCAGCAGTCACGTCTACAAATAGATAACAAATTTGTCATTTCAAGTTTTGTTTATACATTCTACATGACTACTTTTGATGTCTCTTGTGAGACAATTCCAATAGATCGCTCCTTCAAGTACTTTTCAATTACTTGGTTNTGATGTTTTAACTTATAAAATAAACTCGCTG ]
[+] EMBL AW017022             [                                 CCATGAAATGCCCTTCATGCAATAAGGAGGTCTACTTTGCTGAGCGGGTCAATTCACTTGGAAAAGACTGGCATCGTCCGTGTTTGAAATGCGAAAAGTGCAAAAAAACGCTGACTGCGGGTTCCCACTGTG AACATGATGGTAAACCCTATTGTCAGATTCC ATGTTACCAAGCACTGTTTGGACCCAAAGGTTATGGGTCAGTGGCCAGCAGTCACGTCTACAAATAGATAACAAATTTGTCATTTCAAGTTTTGTTTATACATTCTACATGACTACTTTTGATGTCTCTTGTGAGACAATTCCAATAGATCGCTCCTTCAAGTACTTTTCA                                            ]
[-] EMBL CD183059             [                                                                                                                                AAGTGCAAAAAAACGCTGACTGCGGGTTCCCACTGTG AACATGATGGTAAACCCTATTGTCAGATTCC ATGTTACCAAGCACTGTTTGGACCCAAAGGTTATGGGTCAGTGGCCAGCAGTCACGTCTACAAATAGATAACAAATTTGTCATTTCAAGTTTTGTTTATACATTCTACATGACTACTTTTGATGTCTCTTGTGAGACAATTCCAATAGATCGCTCCTTCAAGTACTTTTCAATTACTTGGTTTTGATGTTTTAAC                    ]
[-] EMBL SMAA25674            [                                                                                                                                                                                                  nCC ATGTTACCAAGCACTGTTTGGACCCAAAGGTTATGGGTCAGTGGCCAGCAGTCACGTCTACAAATAGATAACAAATTTGTCATNTCAAGTTTTGTTTATACATTCTACATGACTACTTTTGATGTCTCTTGTGAGACAATTCCAATAGATCGCTCCTTCAAGTACTTTTCAATTACTTGGTTTTGATGTTTTAACTTATAAAATAAACTCGCTGC]
[+] EMBL BE505134             [                                                                                                                                                                                                                       TTGGACCCAAAGGTTATGGGTCAGTGGCCAGCAGTCACGTCTACAAATAGATAACAAATTTGTCATTTCAAGTTTTGTTTATACATTCTACATGACTACTTTTGATGTCTCTTGTGAGACAATTCCAATAGATCGCTCCTTCAAGTACTTTTCAATTACTTGGTTTTGATGTTTTAACTTATTAAATAAACTCGCTG ]




>consensus_9152#0
GTCTAGTTTCTCCCTCCTGTTTTTGTTTATCAGCCATGAAATGCCCTTCATGCAATAAGG
AGGTCTACTTTGCTGAGCGGGTCAATTCACTTGGAAAAGACTGGCATCGTCCGTGTTTGA
AATGCGAAAAGTGCAAAAAAACGCTGACTGCGGGTTCCCACTGTGAACATGATGGTAAAC
CCTATTGTCAGATTCCATGTTACCAAGCACTGTTTGGACCCAAAGGTTATGGGTCAGTGG
CCAGCAGTCACGTCTACAAATAGATAACAAATTTGTCATTTCAAGTTTTGTTTATACATT
CTACATGACTACTTTTGATGTCTCTTGTGAGACAATTCCAATAGATCGCTCCTTCAAGTA
CTTTTCAATTACTTGGTTTTGATGTTTTAACTTATAAAATAAACTCGCTGC

consensusID : consensus_9152#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 271
fasta sequence

                              [CCCTCCTGTTTTTGTTTANCAGCCATGAAAATGCCCTTCANGCAATAAGGAGGTCTACTTTGCTGAGCGGGTCAATTCACTTGGAAAAAGAACNGGCNTCGTCCGTGTTTGAAATGCGAAAAGTGCAAAAAAANCTGACTGCGGGTTCCCACTGTGAACATGAAGGTAAACCCTATTGTCAGAACNCCNTGTTACCAAGCACTGTNTGGACCCANAGGTNNGGGTCNGTTGCCAGCAATCACGTCTACAAATAGATAACNAATTGTCACTT]

[+] EMBL AA559616             [CCCTCCTGTTTTTGTTTANCAGCCATGAAAATGCCCTTCANGCAATAAGGAGGTCTACTTTGCTGAGCGGGTCAATTCACTTGGAAAAAGAACNGGCNTCGTCCGTGTTTGAAATGCGAAAAGTGCAAAAAAANCTGACTGCGGGTTCCCACTGTGAACATGAAGGTAAACCCTATTGTCAGAACNCCNTGTTACCAAGCACTGTNTGGACCCANAGGTNNGGGTCNGTTGCCAGCAATCACGTCTACAAATAGATAACNAATTGTCACTT]




>consensus_9152#1
CCCTCCTGTTTTTGTTTANCAGCCATGAAAATGCCCTTCANGCAATAAGGAGGTCTACTT
TGCTGAGCGGGTCAATTCACTTGGAAAAAGAACNGGCNTCGTCCGTGTTTGAAATGCGAA
AAGTGCAAAAAAANCTGACTGCGGGTTCCCACTGTGAACATGAAGGTAAACCCTATTGTC
AGAACNCCNTGTTACCAAGCACTGTNTGGACCCANAGGTNNGGGTCNGTTGCCAGCAATC
ACGTCTACAAATAGATAACNAATTGTCACTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9152#0      GTCTAGTTTCTCCCTCCTGTTTTTGTTTATCAGCCATGAAA-TGCCCTTCATGCAATAAG 59
consensus_9152#1      -----------CCCTCCTGTTTTTGTTTANCAGCCATGAAAATGCCCTTCANGCAATAAG 49
                                 ****************** *********** ********* ********

consensus_9152#0      GAGGTCTACTTTGCTGAGCGGGTCAATTCACTTGGAAAAG--ACTGGCATCGTCCGTGTT 117
consensus_9152#1      GAGGTCTACTTTGCTGAGCGGGTCAATTCACTTGGAAAAAGAACNGGCNTCGTCCGTGTT 109
                      ***************************************   ** *** ***********

consensus_9152#0      TGAAATGCGAAAAGTGCAAAAAAACGCTGACTGCGGGTTCCCACTGTGAACATGATGGTA 177
consensus_9152#1      TGAAATGCGAAAAGTGCAAAAAAAN-CTGACTGCGGGTTCCCACTGTGAACATGAAGGTA 168
                      ************************  ***************************** ****

consensus_9152#0      AACCCTATTGTCAGA-TTCCATGTTACCAAGCACTGTTTGGACCCAAAGGTTATGGGTCA 236
consensus_9152#1      AACCCTATTGTCAGAACNCCNTGTTACCAAGCACTGTNTGGACCCANAGGTNN-GGGTCN 227
                      ***************   ** **************** ******** ****   ***** 

consensus_9152#0      GTGGCCAGCAGTCACGTCTACAAATAGATAACAAATTTGTCATTTCAAGTTTTGTTTATA 296
consensus_9152#1      GTTGCCAGCAATCACGTCTACAAATAGATAACNAATT-GTCACTT--------------- 271
                      ** ******* ********************* **** **** **               

consensus_9152#0      CATTCTACATGACTACTTTTGATGTCTCTTGTGAGACAATTCCAATAGATCGCTCCTTCA 356
consensus_9152#1      ------------------------------------------------------------
                                                                                  

consensus_9152#0      AGTACTTTTCAATTACTTGGTTTTGATGTTTTAACTTATAAAATAAACTCGCTGC 411
consensus_9152#1      -------------------------------------------------------