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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9168#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 903 fasta sequence
[AACTCTTATCAACTCAAGTATCAAAAATGTGATTAGAAATGTGACATATGATGAACCAAACTTCCTAACATGGACTGGATT-ATAGTTTTGGATGAACCTCCCTATAA-AAGGGTGCTTTCAAAATTGAAATCACTTTTCCGGTTGAATATCCTTTCAAACCTCCTAAAGTGATATTTAAAACACGCATATATCATCCAAATATTGATGAAAAAGGTCAAATATGTCTACCAATAATTAACCCAGAAAATTGGAAACCTGCTACTAAAGTAGAACACGTTATTCAAGCACTTGTTGCAATGCTTCATGCACCGGAAGTTGAACATGCTCTACGTTCAGACTTAGCTGAAGAATATGCTAAGGATCAAAAGAAATTCTTCAAAAATGCTGAAGAGTTTACGCGGAAATATGCGGAGAAAATTCCAAATTTGTAAATTTTGTAATAACTATTACAA-TTTTTTTTCATTATCTCTTCGTGATCACTTCATCTTTTATTTTGTTTCTTTTTTTTGGTCCAAAGTGAAGTATGTTTTTCGTAACTTACACTATTCCACTCATAGTTATGTTGTTTACATTGGCTTGTACACAGTTCAGATGTGTGTTAGTGCCTGTATTGCCACTTTTCTTTTTGATGTTAGGAAAGCTTTTAGCGATATTCATTAGG-AAAGTGTATATCG-CCGGC-AAAAAGT-ATAG-AGTG-ATTAATACATCACTGATCTTCAAAATGTCAAACTAAGTTGACGTATAATTTCATTTAATTTAAATCATTATTTCATATACTTCTGTTGATACTACTAATATTTC-AAAATCTTTTACTCTTC-AAGCTTTTATTCTATTTTGACCAATGCATTGTGTTTCTTTAAAGTGCACAAAAATAATTGCATATATCAATGACATGAATGCATATGA]
[+] EMBL AI977174 [AACTCTTATCAACTCAAGTATCAAAAATGTGATTAGAAATGTGACATATGATGAACCAAACTTCCTAACATGGACTGGATTCATAGTTTTGGATGAACCTCCCTATAATAAGGGTGCTTTCAAAATTGAAATCACTTTTCCGGTTGAATATCCTTTCAAACCTCCTAAAGTGATATTTAAAACACGCATATATCATCCAAATATTGATGAAAAAGGTCAAATATGTCTACCAATAATTAACCCAGAAAATTGGAAACCTGCTACTAAAGTAGAACACGTTATTCAAGCACTTGTTGCAATGCTTCATGCACCGGAAGTTGAACATGCTCTACGTTCAGACTTAGCTGAAGAATATGCTAAGGATCAAAAGAAATTCTTCAAAAATGCTGAAGAGTTTACGCGGAAATATGCGGAGAAAATTCCAAATTTGTAAATTTTGTAATAACTATTACAA TTTTTTTTCATTATCTCTTCGNGATCACTTC ]
[+] EMBL CD078619 [ GGATTCATAGTTTTGGATGAACCTCCCTATAATAAGGGTGCTTTCAAAATTGAAATCACTTTTCCGGTTGAATATCCTTTCAAACCTCCTAAAGTGATATTTAAAACACGCATATATCATCCAAATATTGATGAAAAAGGTCAAATATGTCTACCAATAATTAACCCAGAAAATTGGAAACCTGCTACTAAAGTAGAACACGTTATTCAAGCACTTGTTGCAATGCTTCATGCACCGGAAGTTGAACATGCTCTACGTTCAGACTTAGCTGAAGAATATGCTAAGGATCAAAAGAAATTCTTCAAAAATGCTGAAGAGTTTACGCGGAAATATGCGGAGAAAATTCCAAATTTGTAAATTTTGTAATAACTATTACAA TTTTTTTTCATTATCTCTTCGTGATCACTTCATCTTTTATTTTGTTTCTTTTTTTTGGTCCAAAGTGAAGTATGTTTTTCGTAACTTACACTATTCCACTCATAGTTATGTTGTTTACATTGGCTTGTACACAGTTCAGATGTGTGTTAGTGCCTGTATTGCCACTTTTCTTTTTGATGTT ]
[+] EMBL CD079609 [ ATT ATAGTTTTGGATGAACCTCCCTATAA ATGGGTGCTTTCAAAATTGCAATCACTTTTCCGGTTGAATATCCTTTCAAACCTCCTAAAGTGATATTTAAAACACGCATATATCATCCAAATATTGATGAAAAAGGTCAAATATGTCTACCAATAATTAACCCAGAAAATTGGAAACCTGCTACTAAAGTAGAACACGTTATTCAAGCACTTGTTGCAATGCTTCATGCACCGGAAGTTGAACATGCTCTACGTTCAGACTTAGCTGAAGAATATGCTAAGGATCAAAAGAAATTCTTCAAAAATGCTGAAGAGTTTACGCGGAAATATGCGGAGAAAATTCCAAATTTGTAAATTTTGTAATAACTATTACAA TTTTTTTTCATTATCTCTTCGTGATCACTTCATCTTTTATTTTGTTTCTTTTTTTTGGTCCAAAGTGAAGTATGTTTTTCGTAACTTACACTATTCCACTCATAGTTATGTTGTTTACATTGGCTTGTACACAGTTCAGATGTGTGTTAGTGCCTGTATTGCCACTTTTCTTTTTGATGTTAGGAAAGCTTTTAGCGATATTCATTAGG AAAGTGTATATCG CCGGC AAAAAGT ATAG AGTG ATTAATACATCACTGATCTTCAAAATGTCAAACTAAGTTGACGTATAATTTCATTTAATTTAAATCATTATTTCATATACTTCTGTTGATACTACTAATATTTCAAAAATC TTTACTCTTCAAAGC TTTATTCTATTTTGACCAATGCATTGTGTTTCTTT AAGTGCACAAAAATAATTGCATA ]
[-] EMBL CD073871 [ GGTCAAATATGTCTACCAATAATTAACCCAGAAAATTGGAAACCTGCTACTAAAGTAGAACACGTTATTCAAGCACTTGTTGCAATGCTTCATGCACCGGAAGTTGAACATGCTCTACGTTCAGACTTAGCTGAAGAATATGCTAAGGATCAAAAGAAATTCTTCAAAAATGCTGAAGAGTTTACGCGGAAATATGCGGAGAAAATTCCAAATTTGTAAATTTTGTAATAACTATTACAA TTTTTTTTCATTATCTCTTCGTGATCACTTCATCTTTTATTTTGTTTCTTTTTTTTGGTCCAAAGTGAAGTATGTTTTTCGTAACTTACACTATTCCACTCATAGTTATGTTGTTTACATTGGCTTGTACACAGTTCAGATGTGTGTTAGTGCCTGTATTGCCACTTTTCTTTTTGATGTTAGGAAAGCTTTTAGCGATATTCATTAGG AAAGTGTATATCG CCGGC AAAAAGT ATAG AGTG ATTAATACATCACTGATCTTCAAAATGTCAAACTAAGTTGACGTATAATTTCATTTAATTTAAATCATTATTTCATATACTTCTGTTGATACTACTAATATTTC AAAATCTTTTACTCTTC AAGCTTTTATTCTATTTTGACCAATGCATTGTGTTTCTTTAAAGTGCACAAAAATAATTGCATAT ]
[+] EMBL CD081317 [ aggGGAAACCTGCTACTAAAGTAGAACACGTTATTCAAGCACTTGTTGCAATGCTTCATGCACCGGAAGTTGAACATGCTCTACGTTCAGACTTAGCTGAAGAATATGCTAAGGATCAAAAGAAATTCTTCAAAAATGCTGAAGAGTTTACGCGGAAATATGCGGAGAAAATTCCAAATTTGTAAATTTTGTAATAACTATTACAATTTTTTTTTCATTATCTCTTCGTGATCACTTCATCTTTTATTTTGTTTCTTTTTTTTGGTCCAAAGTGAAGTATGTTTTTCGTAACTTACACTATTCCACTCATAGTTATGTTGTTTACATTGGCTTGTACACAGTTCAGATGTGTGTTAGTGCCTGTATTGCCACTTTTCTTTTTGATGTTAGGAAAGCTTTTAGCGATATTCATTAGG AAAGTGTATATCG CCGGC AAAAAGT ATAG AGTG ATTAATACATCACTGATCTTCAAAATGTCAAACTAAGTTGACGTATAATTTCATTTAATTTAAATCATTATTTCATATACTTCTGTTGATACTACTAATATTTC AAAATCTTTTACTCTTC AAGCTTTTATTCTATTTTGACCAATGCATTGTGTTTCTTTAAAGTGCACAAAAATAATTGCA ]
[-] EMBL CD075149 [ GTTGCAATGCTTCATGCACCGGAAGTTGAACATGCTCTACGTTCAGACTTAGCTGAAGAATATGCTAAGGATCAAAAGAAATTCTTCAAAAATGCTGAAGAGTTTACGCGGAAATATGCGGAGAAAATTCCAAATTTGTAAATTTTGTAATAACTATTACAATTTTTTTTTCATTATCTCTTCGTGATCACTTCATCTTTTATTTTGTTTCTTTTTTTTGGTCCAAAGTGAAGTATGTTTTTCGTAACTTACACTATTCCACTCATAGTTATGTTGTTTACATTGGCTTGTACACAGTTCAGATGTGTGTTAGTGCCTGTATTGCCACTTTTCTTTTTGATGTTAGGAAAGCTTTTAGCGATATTCATTAGG AAAGTGTATATCG CCGGC AAAAAGT ATAG AGTG ATTAATACATCACTGATCTTCAAAATGTCAAACTAAGTTGACGTATAATTTCATTTAATTTAAATCATTATTTCATATACTTCTGTTGATACTACTAATATTTC AAAATCTTTTACTCTTC AAGCTTTTATTCTATTTTGACCAATGCATTGTGTTTCTTTAAAGTGCACAAAAATAATTGCATAT ]
[-] EMBL AI014210 [ aATTAGGNAAAGTGTATACCGCCCGTCAAAAAAGTYATAGTAGTGTATTAATACATCACTGATCTTCAAAATGTCAAACTAAGTTGACGTATAATTTCATTTAATTTAAATCATTATTTCATATACTTCTGTTGATACTACTAATATTTC AAAATCTTTTACTCTTC AAGCTTTTATTCTATTTTGACCAATGCATTGTGTTTCTTTAAAGTGCACAAAAATAATTGCATATATCAATGACATGAATGCATATGA]
consensusID : consensus_9168#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 385 fasta sequence
[TTTGGTCCAAAGTGAAGTATGTTTTTTGTAACTTACACTATTCCACTCAAAGTTATGTTGTTTACATTGGGTTGTACCCAGTTCAAATGTGGGTTAGGGCCTGTATTGCCCCTTTTTTTTTTGATGTTAGGAAAGCTTTTAGCGATATTCATTAGGAAAGTGTATATCCCCGGCAAAAAGTATAGAGTGATTAATACATCCCTGATTTTCAAAATGTCAAATTAAGTTGAGGGAAAATTTCATTTAATTTAAATCATTATTTCAAAAACTTTTGTTAAAAATACTAAAATTTCAAAATTTTTTACTTTTCAAGCTTTTATTTTATTTTGACCAAAGCATTGTGTTTTTTTAAAGGGCCCAAAAATAATTGCATATATCAATGACA]
[-] EMBL CD073082 [TTTGGTCCAAAGTGAAGTATGTTTTTTGTAACTTACACTATTCCACTCAAAGTTATGTTGTTTACATTGGGTTGTACCCAGTTCAAATGTGGGTTAGGGCCTGTATTGCCCCTTTTTTTTTTGATGTTAGGAAAGCTTTTAGCGATATTCATTAGGAAAGTGTATATCCCCGGCAAAAAGTATAGAGTGATTAATACATCCCTGATTTTCAAAATGTCAAATTAAGTTGAGGGAAAATTTCATTTAATTTAAATCATTATTTCAAAAACTTTTGTTAAAAATACTAAAATTTCAAAATTTTTTACTTTTCAAGCTTTTATTTTATTTTGACCAAAGCATTGTGTTTTTTTAAAGGGCCCAAAAATAATTGCATATATCAATGACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9168#0 AACTCTTATCAACTCAAGTATCAAAAATGTGATTAGAAATGTGACATATGATGAACCAAA 60
consensus_9168#1 ------------------------------------------------------------
consensus_9168#0 CTTCCTAACATGGACTGGATTATAGTTTTGGATGAACCTCCCTATAAAAGGGTGCTTTCA 120
consensus_9168#1 ------------------------------------------------------------
consensus_9168#0 AAATTGAAATCACTTTTCCGGTTGAATATCCTTTCAAACCTCCTAAAGTGATATTTAAAA 180
consensus_9168#1 ------------------------------------------------------------
consensus_9168#0 CACGCATATATCATCCAAATATTGATGAAAAAGGTCAAATATGTCTACCAATAATTAACC 240
consensus_9168#1 ------------------------------------------------------------
consensus_9168#0 CAGAAAATTGGAAACCTGCTACTAAAGTAGAACACGTTATTCAAGCACTTGTTGCAATGC 300
consensus_9168#1 ------------------------------------------------------------
consensus_9168#0 TTCATGCACCGGAAGTTGAACATGCTCTACGTTCAGACTTAGCTGAAGAATATGCTAAGG 360
consensus_9168#1 ------------------------------------------------------------
consensus_9168#0 ATCAAAAGAAATTCTTCAAAAATGCTGAAGAGTTTACGCGGAAATATGCGGAGAAAATTC 420
consensus_9168#1 ------------------------------------------------------------
consensus_9168#0 CAAATTTGTAAATTTTGTAATAACTATTACAATTTTTTTTCATTATCTCTTCGTGATCAC 480
consensus_9168#1 ------------------------------------------------------------
consensus_9168#0 TTCATCTTTTATTTTGTTTCTTTTTTTTGGTCCAAAGTGAAGTATGTTTTTCGTAACTTA 540
consensus_9168#1 -------------------------TTTGGTCCAAAGTGAAGTATGTTTTTTGTAACTTA 35
************************** ********
consensus_9168#0 CACTATTCCACTCATAGTTATGTTGTTTACATTGGCTTGTACACAGTTCAGATGTGTGTT 600
consensus_9168#1 CACTATTCCACTCAAAGTTATGTTGTTTACATTGGGTTGTACCCAGTTCAAATGTGGGTT 95
************** ******************** ****** ******* ***** ***
consensus_9168#0 AGTGCCTGTATTGCCACTTTTCTTTTTGATGTTAGGAAAGCTTTTAGCGATATTCATTAG 660
consensus_9168#1 AGGGCCTGTATTGCCCCTTTTTTTTTTGATGTTAGGAAAGCTTTTAGCGATATTCATTAG 155
** ************ ***** **************************************
consensus_9168#0 GAAAGTGTATATCGCCGGCAAAAAGTATAGAGTGATTAATACATCACTGATCTTCAAAAT 720
consensus_9168#1 GAAAGTGTATATCCCCGGCAAAAAGTATAGAGTGATTAATACATCCCTGATTTTCAAAAT 215
************* ******************************* ***** ********
consensus_9168#0 GTCAAACTAAGTTGACGTATAATTTCATTTAATTTAAATCATTATTTCATATACTTCTGT 780
consensus_9168#1 GTCAAATTAAGTTGAGGGAAAATTTCATTTAATTTAAATCATTATTTCAAAAACTTTTGT 275
****** ******** * * ***************************** * **** ***
consensus_9168#0 TGATACTACTAATATTTCAAAATCTTTTACTCTTCAAGCTTTTATTCTATTTTGACCAAT 840
consensus_9168#1 TAAAAATACTAAAATTTCAAAATTTTTTACTTTTCAAGCTTTTATTTTATTTTGACCAAA 335
* * * ****** ********** ******* ************** ************
consensus_9168#0 GCATTGTGTTTCTTTAAAGTGCACAAAAATAATTGCATATATCAATGACATGAATGCATA 900
consensus_9168#1 GCATTGTGTTTTTTTAAAGGGCCCAAAAATAATTGCATATATCAATGACA---------- 385
*********** ******* ** ***************************
consensus_9168#0 TGA 903
consensus_9168#1 ---
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||