cluster # 9182

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Schistosoma mansoni
cluster # 9182 cluster # 9182 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9182#0 length = 735 sequences # 7

consensus_9182#1 length = 457 sequences # 1

consensusID : consensus_9182#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 735
fasta sequence

                              [GTTGTCCAGAACTGATTATAGAACTAATAGCCTGAAGATCACTGGAATCAGAAGATGGACTAGGATGAGGATCAGACAGTAGACCTTTGGTGTGATCTGAAGTAGAACTTAAAGTCTCACTTTCTTTAATTGGTAAAAACAAATCGGTCTTGACCTCAGTAACAGGCAATTTGTTTTTGGCAGGCAAGACACCAACAGGGAGTTGAGAAGGTTTTGACCTTTTCATCATCGCTTGGAGTTTAGGCATGGCTTTAGGCTCCTCAACTTTTACATCCTTAGATGATTCGAAAACCCCGGATGATTCTGTAGGCACATCTGAACCTGGTAAAGACTTGGTAGACTTTCGCATACTAAATTTTAGAGGTCCTAAGGACTCCATTGTGTCAGACTTTGGGAGATAAGAAGACAAACGAGGATAGAACGGCGGTCCTTTGTCATCTACATTTTCAACTGTTAGATTGAGATTTGGTAAGGGAATGTCTGAAGCTTCTATCTTGGCAGCCGGCGGCAGTGGAATATTACATACATCGCTGACACTCTTTGGTATAGGAGCATTAATTGGCCTTGGTAGTGGAATAGCTGATAAATCAAGCGACGGAGAACAATCCT-CTA-ACTCATCCGTTGGTGAAGCCGGGTCATACTCCATCAAGATGTATCAGCTGTGTGAAACTAATACAGTACAATCCCACCA-GGATACAACCAAGGACGTTCAATGCTGTATTAAGGCGCTCTTTA]

[+] EMBL CD124194             [GTTGTCCAGAACTGATTATAGAACTAATAGCCTGAAGATCACTGGAATCAGAAGATGGACTAGGATGAGGATCAGACAGTAGACCTTTGGTGTGATCTGAAGTAGAACTTAAAGTCTCACTTTCTTTAATTGGTAAAAACAAATCGGTCTTGACCTCAGTAACAGGCAATTTGTTTTTGGCAGGCAAGACACCAACAGGGAGTTGAGAAGGTTTTGACCTTTTCATCATCGCTTGGAGTTTAGGCATGGCTTTAGGCTCCTCAACTTTTACATCCTTAGATGATTCGAAAACCCCGGATGATTCTGTAGGCACATCTGAACCTGGTAAAGACTTGGTAGACTTTCGCATACTAAATTTTAGAGGTCCTAAGGACTCCATTGTGTCAGACTTTGGGAGATAAGAAGACAAACGAGGATAGAACGGCGGTCCTTTGTCATCTACATTTTCAACTGTTAGATTGAGATTTGGTAAGGGAATGTCTGAAGCTTCTATCTTGGTAGCCGGCGGCAGTGGAATATTACATACATCGCTGACACTCTNTGGTATAGGAGCATTAATTGGCCTTGGTAGTGGAATAGCTGATAAATCAAGCGACGGAGAAACATCCT CNT ACTCATCCGTTGGTGAAGCCGGGTCATACTCCATCAAGACGTATCAGCTGTGTGAAACTAATACAGTACAATCCCACCAGGGATAC ACCAAGG                              ]
[+] EMBL CD183345             [                                                                                                                                                                                                                                                                                                                                              GGTAGACTTTCGCATACTAAATTTTAGAGGTCCTAAGGACTCCATTGTGTCAGACTTTGGGAGATAAGAAGACAAACGAGGATAGAACGGCGGTCCTTTGTCATCTACATTTTCAACTGTTAGATTGAGATTTGGTAAGGGAATGTCTGAAGCCTCTATCTTGGCAGCCGGCGGCAGTGGAATATTACATACATCGCTGACACTCTTTGGTATAGGAGCATTAATTGGCCTTGGTAGTGGAATAGCTGATAAATCAAGCGACGGAGAACAATCCT CTA ACTCATCCGTTGGTGAAGCCGGGTCATACTCCATCAAGATGTATCAGCTGTGTGAAACTAATACAGTACAATCCCACCA GGATACAACCAAGGACGTTCAATGCTGTATTAAGGCGCTCTTTA]
[+] EMBL CD132932             [                                                                                                                                                                                                                                                                                                                                              GGTAGACTTTCGCATACTAAATTTTAGAGGTCCTAAGGACTCCATTGTGTCAGACTTTGGGAGATAAGAAGACAAACGAGGATAGAACGGCGGTCCTTTGTCATCTACATTTTCAACTGTTAGATTGAGATTTGGTAAGGGAATGTCTGAAGCTTCTATCTTGGCAGCCGGCGGCAGTGGAATATTACATACATCGCTGACACTCTTTGGTATAGGAGCATTAATTGGCCTTGGTAGTGGAATAGCTGATAAATCAAGCGACGGAGAACAATCCT CTA ACTCATCCGTTGGTGAAGCCGGGTCATACTCCATCAAGATGTATCAGCTGTGTGAAACTAATACAGTACAATCCCACCA GGATACAACCAAGGACGTTCAATGCTG                 ]
[-] EMBL CD188470             [                                                                                                                                                                                                                                                                                                                                               GTAGACTTTCGCATACTAAATTTTAGAGGTCCTAAGGACTCCATTGTGTCAGACTTTGGGAGATAAGAAGACAAACGAGGATAGAACGGCGGTCCTTTGTCATCTACATTTTCAACTGTTAGATTGAGATTTGGTAAGGGAATGTCTGAAGCTTCTATCTTGGCAGCCGGCGGCAGTGGAATATTACATACATCGCTGACACTCTTTGGTATAGGAGCATTAATTGGCCCTGGTAGTGGAATAGCTGATAAATCAAGCGACGGAGAACAATCCT CTA ACTCATCCGTTGGTGAAGCCGGGTCATACTCCATCAAGATGTATCAGCTGTGTGAAACTAATACAGTACAATCCCACCA GGATACAACCAAGGACGTTCAATGCTGT                ]
[-] EMBL CD183605             [                                                                                                                                                                                                                                                                                                                                               GTAGACTTTCGCATACTAAATTTTAGAGGTCCTAAGGACTCCATTGTGTCAGACTTTGGGAGGTAAGAAGACAAACGAGGATAGAACGGCGGTCCTTTGTCACCTACATTTTCAACTGTTAGATTGAGATTTGGTAAGGGAATGTCTGAAGCTTCTATCTTGGCAGCCGGCGGCAGTGGAATATTACATACATCGCTGACACTCTTTGGTATAGGAGCATTAATTGGCCTTGGTAGTGGAATAGCTGATAAATCAAGCGACGGAGAACAATCCT CTA ACTCATCCGTTGGTGAAGCCGGGTCATACTCCATCAAGATGTATCAGCTGTGTGAAACTAATACAGTACAATCCCACCA GGATACAACCAAGGACGTTCAATGCTG                 ]
[-] EMBL CD190041             [                                                                                                                                                                                                                                                                                                                                                                                              GTCAGCCTTTGGGAGATAAGAAGACAAACGAGGATAGAACGGCGGTCCTTTGTCATCTACATTTTCAACTGTTAGATTGAGATTTGGTAAGGGAATGTCTGAAGCTTCTATCTTGGCAGCCGGCGGCAGTGGAATACTACATACATCGCTGACACTCTTTGGTATAGGAGCATTAATTGGCCTTGGTAGTGGAATAGCTGATAAATCAAGCGACGGAGAACAATCCT CTA                                                                                                                             ]
[-] EMBL CD124259             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AACAATCATCCTATACTCAT CGTT GTGAAGCCGGGTCATACTCCATCAAGATGTATCAGCTGTGTGAAACTAATACAGTACAATCCCACCA GGATACAACCAAGGA                             ]




>consensus_9182#0
GTTGTCCAGAACTGATTATAGAACTAATAGCCTGAAGATCACTGGAATCAGAAGATGGAC
TAGGATGAGGATCAGACAGTAGACCTTTGGTGTGATCTGAAGTAGAACTTAAAGTCTCAC
TTTCTTTAATTGGTAAAAACAAATCGGTCTTGACCTCAGTAACAGGCAATTTGTTTTTGG
CAGGCAAGACACCAACAGGGAGTTGAGAAGGTTTTGACCTTTTCATCATCGCTTGGAGTT
TAGGCATGGCTTTAGGCTCCTCAACTTTTACATCCTTAGATGATTCGAAAACCCCGGATG
ATTCTGTAGGCACATCTGAACCTGGTAAAGACTTGGTAGACTTTCGCATACTAAATTTTA
GAGGTCCTAAGGACTCCATTGTGTCAGACTTTGGGAGATAAGAAGACAAACGAGGATAGA
ACGGCGGTCCTTTGTCATCTACATTTTCAACTGTTAGATTGAGATTTGGTAAGGGAATGT
CTGAAGCTTCTATCTTGGCAGCCGGCGGCAGTGGAATATTACATACATCGCTGACACTCT
TTGGTATAGGAGCATTAATTGGCCTTGGTAGTGGAATAGCTGATAAATCAAGCGACGGAG
AACAATCCTCTAACTCATCCGTTGGTGAAGCCGGGTCATACTCCATCAAGATGTATCAGC
TGTGTGAAACTAATACAGTACAATCCCACCAGGATACAACCAAGGACGTTCAATGCTGTA
TTAAGGCGCTCTTTA

consensusID : consensus_9182#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 457
fasta sequence

                              [GTAGACTTTCGCATACTAAATTTTAGAGGTCCTAAGGACTCTCATTGTGTCAGACTTTGGGAGGTAAGAAGACAAACGAGGATAGAGCGGCGGTCCTTTGTCATCTACATTTTCAACTGTTAGATTGAGATTTGGTAAGGGAATGTCTGAAGCTTCTATCTTGGCAGCCGGCGGCAGTGGAATATTGCATACATCGCTGACACTCTTTGGTATAGGAGCATTAATTGGCCCTTAAGAATTAGTTAGTTATGGATTTTACTATAAATATCACATACTTGGTAGTGGAATAGCTGATAAATCAAGCGACGGAGGACAATCCTTTAACTCTACTAAATTAGATTTTTATATACAAAAAAAGCGCACTTACTTCGTTGGTGAAGCCGGGTCATAGTCCATCAAAATTGTATCAGCTGTGTGAAAGTAAAGCAGTTCAATCCCCCCAGGAGACATCCAAGGA]

[-] EMBL CD188716             [GTAGACTTTCGCATACTAAATTTTAGAGGTCCTAAGGACTCTCATTGTGTCAGACTTTGGGAGGTAAGAAGACAAACGAGGATAGAGCGGCGGTCCTTTGTCATCTACATTTTCAACTGTTAGATTGAGATTTGGTAAGGGAATGTCTGAAGCTTCTATCTTGGCAGCCGGCGGCAGTGGAATATTGCATACATCGCTGACACTCTTTGGTATAGGAGCATTAATTGGCCCTTAAGAATTAGTTAGTTATGGATTTTACTATAAATATCACATACTTGGTAGTGGAATAGCTGATAAATCAAGCGACGGAGGACAATCCTTTAACTCTACTAAATTAGATTTTTATATACAAAAAAAGCGCACTTACTTCGTTGGTGAAGCCGGGTCATAGTCCATCAAAATTGTATCAGCTGTGTGAAAGTAAAGCAGTTCAATCCCCCCAGGAGACATCCAAGGA]




>consensus_9182#1
GTAGACTTTCGCATACTAAATTTTAGAGGTCCTAAGGACTCTCATTGTGTCAGACTTTGG
GAGGTAAGAAGACAAACGAGGATAGAGCGGCGGTCCTTTGTCATCTACATTTTCAACTGT
TAGATTGAGATTTGGTAAGGGAATGTCTGAAGCTTCTATCTTGGCAGCCGGCGGCAGTGG
AATATTGCATACATCGCTGACACTCTTTGGTATAGGAGCATTAATTGGCCCTTAAGAATT
AGTTAGTTATGGATTTTACTATAAATATCACATACTTGGTAGTGGAATAGCTGATAAATC
AAGCGACGGAGGACAATCCTTTAACTCTACTAAATTAGATTTTTATATACAAAAAAAGCG
CACTTACTTCGTTGGTGAAGCCGGGTCATAGTCCATCAAAATTGTATCAGCTGTGTGAAA
GTAAAGCAGTTCAATCCCCCCAGGAGACATCCAAGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9182#0      GTTGTCCAGAACTGATTATAGAACTAATAGCCTGAAGATCACTGGAATCAGAAGATGGAC 60
consensus_9182#1      ------------------------------------------------------------
                                                                                  

consensus_9182#0      TAGGATGAGGATCAGACAGTAGACCTTTGGTGTGATCTGAAGTAGAACTTAAAGTCTCAC 120
consensus_9182#1      ------------------------------------------------------------
                                                                                  

consensus_9182#0      TTTCTTTAATTGGTAAAAACAAATCGGTCTTGACCTCAGTAACAGGCAATTTGTTTTTGG 180
consensus_9182#1      ------------------------------------------------------------
                                                                                  

consensus_9182#0      CAGGCAAGACACCAACAGGGAGTTGAGAAGGTTTTGACCTTTTCATCATCGCTTGGAGTT 240
consensus_9182#1      ------------------------------------------------------------
                                                                                  

consensus_9182#0      TAGGCATGGCTTTAGGCTCCTCAACTTTTACATCCTTAGATGATTCGAAAACCCCGGATG 300
consensus_9182#1      ------------------------------------------------------------
                                                                                  

consensus_9182#0      ATTCTGTAGGCACATCTGAACCTGGTAAAGACTTGGTAGACTTTCGCATACTAAATTTTA 360
consensus_9182#1      -----------------------------------GTAGACTTTCGCATACTAAATTTTA 25
                                                         *************************

consensus_9182#0      GAGGTCCTAAGGACTC-CATTGTGTCAGACTTTGGGAGATAAGAAGACAAACGAGGATAG 419
consensus_9182#1      GAGGTCCTAAGGACTCTCATTGTGTCAGACTTTGGGAGGTAAGAAGACAAACGAGGATAG 85
                      **************** ********************* *********************

consensus_9182#0      AACGGCGGTCCTTTGTCATCTACATTTTCAACTGTTAGATTGAGATTTGGTAAGGGAATG 479
consensus_9182#1      AGCGGCGGTCCTTTGTCATCTACATTTTCAACTGTTAGATTGAGATTTGGTAAGGGAATG 145
                      * **********************************************************

consensus_9182#0      TCTGAAGCTTCTATCTTGGCAGCCGGCGGCAGTGGAATATTACATACATCGCTGACACTC 539
consensus_9182#1      TCTGAAGCTTCTATCTTGGCAGCCGGCGGCAGTGGAATATTGCATACATCGCTGACACTC 205
                      ***************************************** ******************

consensus_9182#0      TTTGGTATAGGAGCATTAATTGGCC----------------------------------- 564
consensus_9182#1      TTTGGTATAGGAGCATTAATTGGCCCTTAAGAATTAGTTAGTTATGGATTTTACTATAAA 265
                      *************************                                   

consensus_9182#0      ----------TTGGTAGTGGAATAGCTGATAAATCAAGCGACGGAGAACAATCCTCTAAC 614
consensus_9182#1      TATCACATACTTGGTAGTGGAATAGCTGATAAATCAAGCGACGGAGGACAATCCTTTAAC 325
                                ************************************ ******** ****

consensus_9182#0      TCA---------------------------------------TCCGTTGGTGAAGCCGGG 635
consensus_9182#1      TCTACTAAATTAGATTTTTATATACAAAAAAAGCGCACTTACTTCGTTGGTGAAGCCGGG 385
                      **                                        * ****************

consensus_9182#0      TCATACTCCATCAAGAT-GTATCAGCTGTGTGAAACTAATACAGTACAATCCCACCAGGA 694
consensus_9182#1      TCATAGTCCATCAAAATTGTATCAGCTGTGTGAAAGTAAAGCAGTTCAATCCCCCCAGGA 445
                      ***** ******** ** ***************** ***  **** ******* ******

consensus_9182#0      TACAACCAAGGACGTTCAATGCTGTATTAAGGCGCTCTTTA 735
consensus_9182#1      GACATCCAAGGA----------------------------- 457
                       *** *******