cluster # 9193

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Schistosoma mansoni
cluster # 9193 cluster # 9193 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9193#0 length = 1182 sequences # 7

consensus_9193#1 length = 369 sequences # 1

consensusID : consensus_9193#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1182
fasta sequence

                              [ATCGAGGAACTGCATAAACTCAGTATATGTCCTGGTTATGTTATGGCTTTACATGATATCAAATTGCTTTTATTACGTTTCGCCTGTAATCGAACATTCACTGTTGAAACTGGTGGGGGTGGCAAAGAAAGTAATATCCAATTACTGCCACATTTGATGCAAGTTTATTTACATTCATTGTTAATGAGCTCTCATGTTGAACAAGAATTGGAAGCTTTAAAACAATTTACTGAAGTTCCTGGCTCTTATTGGGCTAAATCGGATAAGTGTTGGATTACTACCGGACCCCTATATCGTCTAATAGCAGCTTTACATCTATGGTCACATGGTGAATGGCGTAATCATCGGGCAACTTTATTGCATAGTTTATTGTATATGGCTGTAGGACGTTCAAACAATGCAATATGCTCAACAAGTACTATCGATAATCAATTCACGCTGATCAAACCATATTTAATCTACTTTGGTCTAATCGATTCTATATATGAATATTTATTTAAGAATGTTCCATTAACAAGTTCAATGGAAACTAAATTGAAGTCAGTTACATCAAGTAGTAGTAGTGTTAGTCAGACATCACCATCATGGTCTGTTTCTTTATCGCACTACATTCGTACATCAGATGAAGCTTTGATGAAGGCAGCTCCAAAACTACTTGCTTATTTTGAAGAGAATCTTCTAACAATTGCAAGTGTAGAAGAATTTTTAGATGTTACAGGCTTATTAGAAAATGTAAGTTTAAATGAAATCGAAAGTATCATGGAGACAATGTGCAACAAATAGTCTAATTCCACTGATTAACTTTCTGTTAACAAAAAACGACTGATATATATATAATGAGATTGTACCTGTATTCGGGTTGAGAATTTACTGTAATTCTAAAATCCGCATTAATGTTGTCTAACTGTCGTTGATAATGTTATCGTCCCGCGCCACATATCTACCATAAAGAATAAATGACAAAGATGGAGCTAATCCCACCATTTGTTCCTTATATATATATTACTATTATTGTTGGTCACACGAAGTCCTGTTTCCGTTGAATCTTTTGTTCCATACATTATTATTCTGGCGAATACAATTATCCTCTCTTATATATGTATTGTATTAACTGTAATAAGATTAGAGTAGAATTGTCTATCACTCAATATAGAATTTTTTTGATGATCTAAATATATTTAT]

[+] EMBL CD082094             [ATCGAGGAACTGCATAAACTCAGTATATGTCCTGGTTATGTTATGGCTTTACATGATATCAAATTGCTTTTATTACGTTTCGCCTGTAATCGAACATTCACTGTTGAAACTGGTGGGGGTGGCAAAGAAAGTAATATCCAATTACTGCCACATTTGATGCAAGTTTATTTACATTCATTGTTAATGAGCTCTCATGTTGAACAAGAATTGGAAGCTTTAAAACAATTTACTGAAGTTCCTGGCTCTTATTGGGCTAAATCGGATAAGTGTTGGATTACTACCGGACCCCTATATCGTCTAATAGCAGCTTTACATCTATGGTCACATGGTGAATGGCGTAATCATCGGGCAACTTTATTGCATAGTTTATTGTATATGGCTGTAGGACGTTCAAACAATGCAATATGCTCAACAAGTACTATCGATAATCAATTCACGCTGATCAAACCATATTTAATCTACTTTGGTCTAATCGATTCTATATATGAATATTTATTTAAGAATGTTCCATTAACAAGTTCAATGGAAACTAAATTGAAGTCAGTTACATCAAGTAGTAGTAGTGTTAGTCAGACATCACCATCATGGTCTGTTTCTTTATCGCACTACATTCGTACATCAGATGAAGCTTTGATGAANGCAGCTNCAAAACTACTTGCTTATTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD082926             [                                                                                                                                                                                                                                                                                                                                         TGAATGGCGTAATCATCGGGCAACTTTATTGCATAGTTTATTGTATATGGCTGTAGGACGTTCAAACAATGCAATATGCTCAACAAGTACTATCGATAATCAATTCACGCTGATCAAACCATATTTAATCTACTTTGGTCTAATCGATTCTATATATGAATATTTATTTAAGAATGTTCCATTAACAAGTTCAATGGAAACTAAATTGAAGTCAGTTACATCAAGTAGTAGTAGTGTTAGTCAGACATCACCATCATGGTCTGTTTCTTTATCGCACTACATTCGTACATCAGATGAAGCTTTGATGAAGGCAGCTCCAAAACTACTTGCTTATTTTGAAGAGAATCTTCTAACAATTGCAAGTGTAGAAGAATTTTTAGATGTTACAGGCTTATTAGAAAATGTAAGTTTAAATGAAATCGAAAGTATCATGGAGACAATGTGCAACAAATAGTCTAATTCCACTGATTAACTTTCTGTTAACAAAAAACGACTGATATATATATAATGAGATTGTACCTGTATTCGGGTTGAGAATTTACTGTAATTCTAAAATCCGCATTAATGTTGTCTAACTGTCGTTGATAATGTTATCGTCCCGCGCCACATATCTACCATAAAGAAATAATGANCAAGATGGAG                                                                                                                                                                                                                   ]
[-] EMBL CD076510             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GTTACATCAAGTAGTAGTAGTGTTAGTCAGACATCACCATCATGGTCTGTTTCTTTATCGCACTACATTCGTACATCAGATGAAGCTTTGATGAAGGCAGCTCCAAAACTACTTGCTTATTTTGAAGAGAATCTTCTAACAATTGCAAGTGTAGAAGAATTTTTAGATGTTACAGGCTTATTAGAAAATGTAAGTTTAAATGAAATCGAAAGTATCATGGAGACAATGTGCAACAAATAGTCTAATTCCACTGATTAACTTTCTGTTAACAAAAAACGACTGATATATATATAATGAGATTGTACCTGTATTCGGGTTGAGAATTTACTGTAATTCTAAAATCCGCATTAATGTTGTCTAACTGTCGTTGATAATGTTATCGTCCCGCGCCACATATCTACCATAAAGAATAAATGACAAAGATGGAGCTAATCCCACCATTTGTTCCTTATATATATATTACTATTATTGTTGGTCACACGAAGTCCTGTTTCCGTTGAATCTTTTGTTCCATACATTATTATTCTGGCGAATACAATTATCCTCTCTTATATATGTATTGTATTAACTGTAATAAGATTAGAGTAGAATTGTCTATCACTCAATATAGAATTTTTTTGATGATCTAAATATATTTAT]
[-] EMBL CD077002             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ATTCGTACATCAGATGAAGCTTTGATGAAGGCAGCTCCAAAACTACTTGCTTATTTTGAAGAGAATCTTCTAACAATTGCAAGTGTAGAAGAATTTTTAGATGTTACAGGCTTATTAGAAAATGTAAGTTTAAATGAAATCGAAAGTATCATGGAGACAATGTGCAACAAATAGTCTAATTCCACTGATTAACTTTCTGTTAACAAAAAACGACTGATATATATATAATGAGATTGTACCTGTATTCGGGTTGAGAATTTACTGTAATTCTAAAATCCGCATTAATGTTGTCTAACTGTCGTTGATAATGTTATCGTCCCGCGCCACATATCTACCATAAAGAATAAATGACAAAGATGGAGCTAATCCCACCATTTGTTCCTTATATATATATTACTATTATTGTTGGTCACACGAAGTCCTGTTTCCGTTGAATCTTTTGTTCCATACATTATTATTCTGGCGAATACAATTATCCTCTCTTATATATGTATTGTATTAACTGTAATAAGATTAGAGTAGAATTGTCTATCACTCAATATAGAATTTTTTTGATGATGTAAATATATTTAT]
[-] EMBL CD075709             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GAAGCTTTGATGAAGGCAGCTCCAAAACTACTTGCTTATTTTGAAGAGAATCTTCTAACAATTGCAAGTGTAGAAGAATTTTTAGATGTTACAGGCTTATTAGAAAATGTAAGTTTAAATGAAATCGAAAGTATCATGGAGACAATGTGCAACAAATAGTCTAATTCCACTGATTAACTTTCTGTTAACAAAAAACGACTGATATATATATAATGAGATTGTACCTGTATTCGGGTTGAGAATTTACTGTAATTTTAAAATCCGCATTAATGTTGTCTAACTGTCGTTGATAATGTTATCGTCCCGCGCCACATATTTACCATAAAGAATAAATGACAAAGATGGAGCTAATCCCCCCATTTGTTCCTTATATATATATTACTATTATTGTTGGTCACACGAAGTCCTGTTTCCGTTGAATCTTTTGTTCCATACATTATTATTCTGGCGAATACAATTATCCTCTCTTATATATGTATTGTATTAACTGTAATAAGATTAGAGTAGAATTGTCTATCACTCAATATAGAATTTTTTTGATGATCTAAATATATTTAT]
[-] EMBL CD077133             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   AGATGTTACAGGCTTATTAGAAAATGTAAGTTTAAATGAAATCGAAAGTATCATGGAGACAATGTGCAACAAATAGTCTAATTCCACTGATTAACTTTCTGTTAACAAAAAACGGCTGATATATATATAATGAGATTGTACCTGTATTCGGGTTGAGAATTTACTGTAATTCTAAAATCCGCATTAATGTTGTCTAACTGTCGTTGATAATGTTATCGTCCCGCGCCACATATCTACCATAAAGAATAAATGACAAAGATGGAGCTAATCCCACCATTTGTTCCTTATATATATATTACTATTATTGTTGGTCACACGAAGTCCTGTTTCCGTTGAATCTTTTGTTCCATACATTATTATTCTGGCGAATACAATTATCCTCTCTTATATATGTATTGTATTAACTGTAATAAGATTAGAGTAGAATTGTCTATCACTCAATATAGAATTTTTTTGATGATCTAAATATATTTAT]
[-] EMBL CD140897             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TGCAACAAATAGTCTAATTCCACTGATTAACTTTCTGCTAACAAAAAACGACTGATATATATATAATGAGATTGTACCTGTATTCGGGTTGAGAATTTACTGTAATTCTAAAATCCGCATTAATGTTGTCTAACTGTCGTTGATAATGTTATCGTCCCGCGCCACATATCTACCATAAAGAATAAATGACAAAGATGGAGCTAATCCCACCATTTGTTCCTTATATATATATTACTATTATTGTTGGTCACACGAAGTCCTGTTTCCGTTGAATCTTTTGTTCCATACATTATTATTCTGGCGAATACAATTATCCTCTCTTATATATGTATTGTATTAACTGTAATAAGATTAGAGTAGAATTGTCTATCACTCAATATAGA                            ]




>consensus_9193#0
ATCGAGGAACTGCATAAACTCAGTATATGTCCTGGTTATGTTATGGCTTTACATGATATC
AAATTGCTTTTATTACGTTTCGCCTGTAATCGAACATTCACTGTTGAAACTGGTGGGGGT
GGCAAAGAAAGTAATATCCAATTACTGCCACATTTGATGCAAGTTTATTTACATTCATTG
TTAATGAGCTCTCATGTTGAACAAGAATTGGAAGCTTTAAAACAATTTACTGAAGTTCCT
GGCTCTTATTGGGCTAAATCGGATAAGTGTTGGATTACTACCGGACCCCTATATCGTCTA
ATAGCAGCTTTACATCTATGGTCACATGGTGAATGGCGTAATCATCGGGCAACTTTATTG
CATAGTTTATTGTATATGGCTGTAGGACGTTCAAACAATGCAATATGCTCAACAAGTACT
ATCGATAATCAATTCACGCTGATCAAACCATATTTAATCTACTTTGGTCTAATCGATTCT
ATATATGAATATTTATTTAAGAATGTTCCATTAACAAGTTCAATGGAAACTAAATTGAAG
TCAGTTACATCAAGTAGTAGTAGTGTTAGTCAGACATCACCATCATGGTCTGTTTCTTTA
TCGCACTACATTCGTACATCAGATGAAGCTTTGATGAAGGCAGCTCCAAAACTACTTGCT
TATTTTGAAGAGAATCTTCTAACAATTGCAAGTGTAGAAGAATTTTTAGATGTTACAGGC
TTATTAGAAAATGTAAGTTTAAATGAAATCGAAAGTATCATGGAGACAATGTGCAACAAA
TAGTCTAATTCCACTGATTAACTTTCTGTTAACAAAAAACGACTGATATATATATAATGA
GATTGTACCTGTATTCGGGTTGAGAATTTACTGTAATTCTAAAATCCGCATTAATGTTGT
CTAACTGTCGTTGATAATGTTATCGTCCCGCGCCACATATCTACCATAAAGAATAAATGA
CAAAGATGGAGCTAATCCCACCATTTGTTCCTTATATATATATTACTATTATTGTTGGTC
ACACGAAGTCCTGTTTCCGTTGAATCTTTTGTTCCATACATTATTATTCTGGCGAATACA
ATTATCCTCTCTTATATATGTATTGTATTAACTGTAATAAGATTAGAGTAGAATTGTCTA
TCACTCAATATAGAATTTTTTTGATGATCTAAATATATTTAT

consensusID : consensus_9193#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 369
fasta sequence

                              [CGACTTCATCAAAAACTGTAAAACAACAACAAGCTCCAGACACTGTTTACGCTGGACATTTAGCCAACTTCATGGATTTCATTATGCATAAACTCAGTTATATGTCCTGGTTATGTAATGGCTTTACATGATATCAAATTGCTTTTATTACGTTTCGCCTGTAATCGAACATTCACTGTTGAAACTGGTGGGGGTGGCAAAGAAAGTAATATCCAATTACTGCCACATTTGATGCAAGTTTATTTACATTCATTGTTAATGAGCTCTCATGTTGAACAAGAATTGGAAGCTTTAAAACAATTTACTGAAGTTCCTGGCTCTTATTGGGCTAAATCGGATAAGTGTTGGATTACTACCGGACCCCTATAT]

[-] EMBL CD121289             [CGACTTCATCAAAAACTGTAAAACAACAACAAGCTCCAGACACTGTTTACGCTGGACATTTAGCCAACTTCATGGATTTCATTATGCATAAACTCAGTTATATGTCCTGGTTATGTAATGGCTTTACATGATATCAAATTGCTTTTATTACGTTTCGCCTGTAATCGAACATTCACTGTTGAAACTGGTGGGGGTGGCAAAGAAAGTAATATCCAATTACTGCCACATTTGATGCAAGTTTATTTACATTCATTGTTAATGAGCTCTCATGTTGAACAAGAATTGGAAGCTTTAAAACAATTTACTGAAGTTCCTGGCTCTTATTGGGCTAAATCGGATAAGTGTTGGATTACTACCGGACCCCTATAT]




>consensus_9193#1
CGACTTCATCAAAAACTGTAAAACAACAACAAGCTCCAGACACTGTTTACGCTGGACATT
TAGCCAACTTCATGGATTTCATTATGCATAAACTCAGTTATATGTCCTGGTTATGTAATG
GCTTTACATGATATCAAATTGCTTTTATTACGTTTCGCCTGTAATCGAACATTCACTGTT
GAAACTGGTGGGGGTGGCAAAGAAAGTAATATCCAATTACTGCCACATTTGATGCAAGTT
TATTTACATTCATTGTTAATGAGCTCTCATGTTGAACAAGAATTGGAAGCTTTAAAACAA
TTTACTGAAGTTCCTGGCTCTTATTGGGCTAAATCGGATAAGTGTTGGATTACTACCGGA
CCCCTATAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9193#0      ------------------------------------------------------------
consensus_9193#1      CGACTTCATCAAAAACTGTAAAACAACAACAAGCTCCAGACACTGTTTACGCTGGACATT 60
                                                                                  

consensus_9193#0      --------ATCGAGGAACT------GCATAAACTCAGT-ATATGTCCTGGTTATGTTATG 45
consensus_9193#1      TAGCCAACTTCATGGATTTCATTATGCATAAACTCAGTTATATGTCCTGGTTATGTAATG 120
                               **  ***  *      ************* ***************** ***

consensus_9193#0      GCTTTACATGATATCAAATTGCTTTTATTACGTTTCGCCTGTAATCGAACATTCACTGTT 105
consensus_9193#1      GCTTTACATGATATCAAATTGCTTTTATTACGTTTCGCCTGTAATCGAACATTCACTGTT 180
                      ************************************************************

consensus_9193#0      GAAACTGGTGGGGGTGGCAAAGAAAGTAATATCCAATTACTGCCACATTTGATGCAAGTT 165
consensus_9193#1      GAAACTGGTGGGGGTGGCAAAGAAAGTAATATCCAATTACTGCCACATTTGATGCAAGTT 240
                      ************************************************************

consensus_9193#0      TATTTACATTCATTGTTAATGAGCTCTCATGTTGAACAAGAATTGGAAGCTTTAAAACAA 225
consensus_9193#1      TATTTACATTCATTGTTAATGAGCTCTCATGTTGAACAAGAATTGGAAGCTTTAAAACAA 300
                      ************************************************************

consensus_9193#0      TTTACTGAAGTTCCTGGCTCTTATTGGGCTAAATCGGATAAGTGTTGGATTACTACCGGA 285
consensus_9193#1      TTTACTGAAGTTCCTGGCTCTTATTGGGCTAAATCGGATAAGTGTTGGATTACTACCGGA 360
                      ************************************************************

consensus_9193#0      CCCCTATATCGTCTAATAGCAGCTTTACATCTATGGTCACATGGTGAATGGCGTAATCAT 345
consensus_9193#1      CCCCTATAT--------------------------------------------------- 369
                      *********                                                   

consensus_9193#0      CGGGCAACTTTATTGCATAGTTTATTGTATATGGCTGTAGGACGTTCAAACAATGCAATA 405
consensus_9193#1      ------------------------------------------------------------
                                                                                  

consensus_9193#0      TGCTCAACAAGTACTATCGATAATCAATTCACGCTGATCAAACCATATTTAATCTACTTT 465
consensus_9193#1      ------------------------------------------------------------
                                                                                  

consensus_9193#0      GGTCTAATCGATTCTATATATGAATATTTATTTAAGAATGTTCCATTAACAAGTTCAATG 525
consensus_9193#1      ------------------------------------------------------------
                                                                                  

consensus_9193#0      GAAACTAAATTGAAGTCAGTTACATCAAGTAGTAGTAGTGTTAGTCAGACATCACCATCA 585
consensus_9193#1      ------------------------------------------------------------
                                                                                  

consensus_9193#0      TGGTCTGTTTCTTTATCGCACTACATTCGTACATCAGATGAAGCTTTGATGAAGGCAGCT 645
consensus_9193#1      ------------------------------------------------------------
                                                                                  

consensus_9193#0      CCAAAACTACTTGCTTATTTTGAAGAGAATCTTCTAACAATTGCAAGTGTAGAAGAATTT 705
consensus_9193#1      ------------------------------------------------------------
                                                                                  

consensus_9193#0      TTAGATGTTACAGGCTTATTAGAAAATGTAAGTTTAAATGAAATCGAAAGTATCATGGAG 765
consensus_9193#1      ------------------------------------------------------------
                                                                                  

consensus_9193#0      ACAATGTGCAACAAATAGTCTAATTCCACTGATTAACTTTCTGTTAACAAAAAACGACTG 825
consensus_9193#1      ------------------------------------------------------------
                                                                                  

consensus_9193#0      ATATATATATAATGAGATTGTACCTGTATTCGGGTTGAGAATTTACTGTAATTCTAAAAT 885
consensus_9193#1      ------------------------------------------------------------
                                                                                  

consensus_9193#0      CCGCATTAATGTTGTCTAACTGTCGTTGATAATGTTATCGTCCCGCGCCACATATCTACC 945
consensus_9193#1      ------------------------------------------------------------
                                                                                  

consensus_9193#0      ATAAAGAATAAATGACAAAGATGGAGCTAATCCCACCATTTGTTCCTTATATATATATTA 1005
consensus_9193#1      ------------------------------------------------------------
                                                                                  

consensus_9193#0      CTATTATTGTTGGTCACACGAAGTCCTGTTTCCGTTGAATCTTTTGTTCCATACATTATT 1065
consensus_9193#1      ------------------------------------------------------------
                                                                                  

consensus_9193#0      ATTCTGGCGAATACAATTATCCTCTCTTATATATGTATTGTATTAACTGTAATAAGATTA 1125
consensus_9193#1      ------------------------------------------------------------
                                                                                  

consensus_9193#0      GAGTAGAATTGTCTATCACTCAATATAGAATTTTTTTGATGATCTAAATATATTTAT 1182
consensus_9193#1      ---------------------------------------------------------