cluster # 9203

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Schistosoma mansoni
cluster # 9203 cluster # 9203 Sequences # 8 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9203#0 length = 722 sequences # 2

consensus_9203#1 length = 555 sequences # 5
consensus_9203#2 length = 290 sequences # 1

consensusID : consensus_9203#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 722
fasta sequence

                              [TCCAGGCCAANAATTCGGCACGAGGAGCGTTACTGCCCATGT-TGCCGAAATAAATTGCCTGGTTTGATATCGAATCACTATGGATACAGTCCTATTGAGTGATCTTGAACGGTTCTACTTAGTACAAGGAGTTGAAGTGGGATGTAGAATGGATGGTCGTGGGCCAAGTGAATATCGACCTTTAGAAATCGAAACTAATATTTTGAGTCATGCAACTGGTTCAGCTAGGTGAAACTTTCATCGTTTGCTGTGTTAAAATGGAGGTTGGCAAACCTTCTTTAACTAACACTAGTGAAGGTCGTATTGAAATAAATGTTGAGTGGTGAGTGAAAGGTATTCATCTTCAAATAATATATAACTTTGTAACGTATATTTAATGTTTTGTGTCAACATATGCTTTCAATATCCCATATATCTCATCTGTATCATTACGTACATTTTTTTACAAAACTGACGATTTGTACAAAATCTTTCTCAGTTACCCTACGGCAACTCACCGCTGTAACGAAAAGGCAGCATCCGAACTGGAGGAACGTTTGAAGACAACATTGCAATCAGCCTATCAATTGAAGTTTATAGATCTAAGCCCTCTGTGTATCCAACGTGGTCGACAGTGCTGGGTCATCTATATTGATCTGCTTGTCAGTTTTTATCATACTTAGTTATTTTTCCCAGATTTTAGAGGGTGCTGGNAACTTACTTGATGCTTCCTNCTTGGTAGT]

[+] EMBL CD079828             [TCCAGGCCAANAATTCGGCACGAGGAGCGTTACTGCCCATGT TGCCGAAATAAATTGCCTGGTTTGATATCGAATCACTATGGATACAGTCCTATTGAGTGATCTTGAACGGTTCTACTTAGTACAAGGAGTTGAAGTGGGATGTAGAATGGATGGTCGTGGGCCAAGTGAATATCGACCTTTAGAAATCGAAACTAATATTTTGAGTCATGCAACTGGTTCAGCTAGGTGAAACTTTCATCGTTTGCTGTGTTAAAATGGAGGTTGGCAAACCTTCTTTAACTAACACTAGTGAAGGTCGTATTGAAATAAATGTTGAGTGGTGAGTGAAAGGTATTCATCTTCAAATAATATATAACTTTGTAACGTATATTTAATGTTTTGTGTCAACATATGCTTTCAATATCCCATATATCTCATCTGTATCATTACGTACATTTTTTTACAAAACTGACGATTTGTACAAAATCTTTCTCAGTTACCCTACGGCAACTCACCGCTGTAACGAAAAGGCAGCATCCGAACTGGAGGAACGTTTGAAGACAACATTGCAATCAGCCTATCAATTGAAGTTTATAGATCTAAGCCCTCTGTGTATCCAACGTGGTCGACAGTGCTGGGTCATCTATATTGATCTGCTTGTCAGTTTTTATCATACTTAGTTATTTTTCCCAGATTTTAGAGGGTGCTGGNAACTTACTTGATGCTTCCTNCTTGGTAGT]
[+] EMBL CD079236             [                         AGCGTTACTGCCCATGTATGCCGAAATAAATTGCCTGGTTTGATATCGAATCACTATGGATACAGTCCTATTGAGTGATCTTGAACGGTTCTACTTAGTACAAGGAGTTGAGGTGGGATGTAGAATGGATGGTCGTGGGCCAAGTGAATATCGACCTTTAGAAATCGAAACTAATATTTTGAGTCATGCAACTGGTTCAGCTAGGTGAAACTTTCATCGTTTGCTGTGTTAAAATGGAGGTTGGCAAACCTTCTTTAACTAACACTAGTGAAGGTCGTATTGAAATAAATGTTGAGTGGTGAGTGAAAGGTATTCATCTTCAAATAATATATAACTTTGTAACGTATATTTAATGTTTTGTGTCAACATATGCTTTCAATATCCCATATATCTCATCTGTATCATTACGTACATTTTTTTACAAAACTGACGATTTGTACAAAATCTTTCTCAGTTACCCTACGGCAACTCACCGCTGTAACGAAAAGGCAGCATCCGAACTGGAGGAACGTTTGAAGACAACATTGCAATCAGCCTATCAATTGAAGTTTATAGATCTAAGCCCTCTGTGT                                                                                                                              ]




>consensus_9203#0
TCCAGGCCAANAATTCGGCACGAGGAGCGTTACTGCCCATGTTGCCGAAATAAATTGCCT
GGTTTGATATCGAATCACTATGGATACAGTCCTATTGAGTGATCTTGAACGGTTCTACTT
AGTACAAGGAGTTGAAGTGGGATGTAGAATGGATGGTCGTGGGCCAAGTGAATATCGACC
TTTAGAAATCGAAACTAATATTTTGAGTCATGCAACTGGTTCAGCTAGGTGAAACTTTCA
TCGTTTGCTGTGTTAAAATGGAGGTTGGCAAACCTTCTTTAACTAACACTAGTGAAGGTC
GTATTGAAATAAATGTTGAGTGGTGAGTGAAAGGTATTCATCTTCAAATAATATATAACT
TTGTAACGTATATTTAATGTTTTGTGTCAACATATGCTTTCAATATCCCATATATCTCAT
CTGTATCATTACGTACATTTTTTTACAAAACTGACGATTTGTACAAAATCTTTCTCAGTT
ACCCTACGGCAACTCACCGCTGTAACGAAAAGGCAGCATCCGAACTGGAGGAACGTTTGA
AGACAACATTGCAATCAGCCTATCAATTGAAGTTTATAGATCTAAGCCCTCTGTGTATCC
AACGTGGTCGACAGTGCTGGGTCATCTATATTGATCTGCTTGTCAGTTTTTATCATACTT
AGTTATTTTTCCCAGATTTTAGAGGGTGCTGGNAACTTACTTGATGCTTCCTNCTTGGTA
GT

consensusID : consensus_9203#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 555
fasta sequence

                              [AAAAATGGCGGGGTTGATATTGAATCCCTATGGATCCAGTCCTATTAAGTGTTTTGAACGGTTTTATTTAGACCAAGGAGTTGAATTGGGATGTAAAATGGATGTTCGTGGGCCAAGTAAATATCGACCTTTAGAAATCGAAACTAATATTTTGAGTCATGCAACTGGTTCAGCTAGTATTCGTATTGGTGAAACTTTCATCGTTTGCTGTGTTAAAATGGAGGTTGGCAAACCTTCTTTAACTAACACTAGTGAAGGTCGTATTGAAATAGATGTTGAGTGTTACCCTAC-GGCAACTCACCGCTGTAACGAAAAGGCAGCATCCGAACTGGAGGAACGTTTGAAGACAACATTGCAATCAGCCTATCAATTGAAGTTTATAGATCTAAGCCCTCTGTGTATCCAACGTGGTCGACAGTGCTGGGTCATCTATATTGATCTGCTTATTTTAGAGGGTGCTGGAAACTTACTTGATGCTTCCTCCTTGGTAGTCAAAGCTGCTCTACTAAACGCTACACAGTCAAATTCTTTATTATTGTCTGTTTTTCAAAACAA]

[-] EMBL CD149915             [AAAAATGGCGGGGTTGATATTGAATCCCTATGGATCCAGTCCTATTAAGTGTTTTGAACGGTTTTATTTAGACCAAGGAGTTGAATTGGGATGTAAAATGGATGTTCGTGGGCCAAGTAAATATCGACCTTTAGAAATCGAAACTAATATTTTGAGTCATGCAACTGGTTCAGTTAGTATTCG ATTGGT AAACTTTCATGGTTGGCTGTGTTAAAAT GAGGGTGGCCAACCTTCTTTAATTAACATTAGTGAAGGTCGTATTGAAATAAATGTTAAGTGTTA CCTCCGGGCAATTCACGGTTGTAACGAAAAGCCAGC TCCGAACTGGAGGAACGTTTGAAGACAACATTGCAATCAGCCTATCAATTGAAGTTTATAGATCTAAGCCCTCTGTGTATCCAACGTGGTCGACAGTGCTGGGTCATCTATATTGATCTGCTTATTTTAGAGGGTGCTGGAAACTTACTTGATGCTTCCTCCTTGGTAGTCAAAGCTGCTCTACTAAACGCTACACAGTCAAATTCTTTATTATTGTCTGTTTTTCAAAACAA]
[-] EMBL CD149991             [                                                                                                                                                           GTCATGCAACTGGTTCAGCTAGTATTCGTATTGGTGAAACTTTCATCGTTTGCTGTGTTAAAATGGAGGTTGGCAAACCTTCTTTAACTAACACTAGTGAAGGTCGTATTGAAATAGATGTTGAGTGTTACCCTAC GGCAACTCACCGCTGTAACGAAAAGGCAGCATCCGAACTGGAGGAACGTTTGAAGACAACATTGCAATCAGCCTATCAATTGAAGTTTATAGATCTAAGCCCTCTGTGTATCCAACGTGGTCGACAGTGCTGGGTCATCTATATTGATCTGCTTATTTTAGAGGGTGCTGGAAACTTACTTGATGCTTCCTCCTTGGTAGTCAAAGCTGCTCTACTAAACGCTACACAGTCAAATTCTTTATTATTGTCTGTTTTTCAAAACAA]
[-] EMBL CD150016             [                                                                                                                                                                        TTCAGCTAGTATTCGTATTGGTGAAACTTTCATCGTTTGCTGTGTTAAAATGGAGGTTGGCAAACCTTCTTTAACTAACACTAGTGAAGGTCGTATTGAAATAGATGTTGAGTGTTACCCTAC GGCAACTCACCGCTGTAACGAAAAGGCAGCATCCGAACTGGAGGAACGTTTGAAGACAACATTGCAATCAGCCTATCAATTGAAGTTTATAGATCTAAGCCCTCTGTGTATCCAACGTGGTCGACAGTGCTGGGTCATCTATATTGATCTGCTTATTTTAGAGGGTGCTGGAAACTTACTTGATGCTTCCTCCTTGGTAGTCAAAGCTGCTCTACTAAACGCTACACAGTCAAATTCTTTATTATTGTCTGTTTTTCAAAACAA]
[-] EMBL CD149984             [                                                                                                                                                                                          TGGTGAAACTTTCATCGTTTGCTGTGTTAAAATGGAGGTTGGCAAACCTTCTTTAACTAACACTAGTGAAGGTCGTATTGAAATAGATGTTGAGTGTTACCCTAC GGCAACTCACCGCTGTAACGAAAAGGCAGCATCCGAACTGGAGGAACGTTTGAAGACAACATTGCAATCAGCCTATCAATTGAAGTTTATAGATCTAAGCCCTCTGTGTATCCAACGTGGTCGACAGTGCTGGGTCATCTATATTGATCTGCTTATTTTAGAGGGTGCTGGAAACTTACTTGATGCTTCCTCCTTGGTAGTCAAAGCTGCTCTACTAAACGCTACACAGTCAAATTCTTTATTATTGTCTGTTTTTCAAAACAA]
[-] EMBL CD149982             [                                                                                                                                                                                                                                                           GTGAAGGTCGTATTGAAATAGATGTTGAGTGTTACCNTAC GGCAACTCACCGCTGTAACGAAAAGGCAGCATCCGAACTGGAGGAACGTTTGAAGACAACATTGCAATCAGCCTATCAATTGAAGTTTATAGATCTAAGCCCTCTGTGTATCCAACGTGGTCGACAGTGCTGGGTCATCTATATTGATCTGCTTATTTTAGAGGGTGCTGGAAACTTACTTGATGCTTCCTCCTTGGTAGTCAAAGCTGCTCTACTAAACGCTACACAGTCAAATTCTTTATTATTGTCTGTTTTTCAAAACAA]




>consensus_9203#1
AAAAATGGCGGGGTTGATATTGAATCCCTATGGATCCAGTCCTATTAAGTGTTTTGAACG
GTTTTATTTAGACCAAGGAGTTGAATTGGGATGTAAAATGGATGTTCGTGGGCCAAGTAA
ATATCGACCTTTAGAAATCGAAACTAATATTTTGAGTCATGCAACTGGTTCAGCTAGTAT
TCGTATTGGTGAAACTTTCATCGTTTGCTGTGTTAAAATGGAGGTTGGCAAACCTTCTTT
AACTAACACTAGTGAAGGTCGTATTGAAATAGATGTTGAGTGTTACCCTACGGCAACTCA
CCGCTGTAACGAAAAGGCAGCATCCGAACTGGAGGAACGTTTGAAGACAACATTGCAATC
AGCCTATCAATTGAAGTTTATAGATCTAAGCCCTCTGTGTATCCAACGTGGTCGACAGTG
CTGGGTCATCTATATTGATCTGCTTATTTTAGAGGGTGCTGGAAACTTACTTGATGCTTC
CTCCTTGGTAGTCAAAGCTGCTCTACTAAACGCTACACAGTCAAATTCTTTATTATTGTC
TGTTTTTCAAAACAA

consensusID : consensus_9203#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 290
fasta sequence

                              [GTGCTTTCAAACTTAAGCGTTACTGCCCATTTACCCTACGGCAACTCACCGCTGTAACGAAAAGGCAGCATCCGAACTGGAGGAACGTTTGAAGACAACATTGCAATCAGCCTATCAATTGAAGTTTATAGATCTAAGCCCTCTGTGTATCCAACGTGGTCGACAGTGCTGGGTCATCTATATTGATCTGCTTGTCAGTTTTTATCATACTTAGTTATTTTTCCCAGATTTTAGAGGGTGCTGGAAACTTACTTGATGCTTCCTCCTTGGTAGTCAAAGCTGCTCTACTA]

[-] EMBL CD192630             [GTGCTTTCAAACTTAAGCGTTACTGCCCATTTACCCTACGGCAACTCACCGCTGTAACGAAAAGGCAGCATCCGAACTGGAGGAACGTTTGAAGACAACATTGCAATCAGCCTATCAATTGAAGTTTATAGATCTAAGCCCTCTGTGTATCCAACGTGGTCGACAGTGCTGGGTCATCTATATTGATCTGCTTGTCAGTTTTTATCATACTTAGTTATTTTTCCCAGATTTTAGAGGGTGCTGGAAACTTACTTGATGCTTCCTCCTTGGTAGTCAAAGCTGCTCTACTA]




>consensus_9203#2
GTGCTTTCAAACTTAAGCGTTACTGCCCATTTACCCTACGGCAACTCACCGCTGTAACGA
AAAGGCAGCATCCGAACTGGAGGAACGTTTGAAGACAACATTGCAATCAGCCTATCAATT
GAAGTTTATAGATCTAAGCCCTCTGTGTATCCAACGTGGTCGACAGTGCTGGGTCATCTA
TATTGATCTGCTTGTCAGTTTTTATCATACTTAGTTATTTTTCCCAGATTTTAGAGGGTG
CTGGAAACTTACTTGATGCTTCCTCCTTGGTAGTCAAAGCTGCTCTACTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9203#0      TCCAGGCCAANAATTCGGCACGAGGAGCGTTACTGCCCATGTTGCCGAAATAAATTGCCT 60
consensus_9203#2      ------------------------------------------------------------
consensus_9203#1      ------------------------------------------------------------
                                                                                  

consensus_9203#0      GGTTTGATATCGAATCACTATGGATACAGTCCTATTGAGTGATCTTGAACGGTTCTACTT 120
consensus_9203#2      ------------------------------------------------------------
consensus_9203#1      ------------------------------------------------------------
                                                                                  

consensus_9203#0      AGTACAAGGAGTTGAAGTGGGATGTAGAATGGATGGTCGTGGGCCAAGTGAATATCGACC 180
consensus_9203#2      ------------------------------------------------------------
consensus_9203#1      ------------------------------------------------------------
                                                                                  

consensus_9203#0      TTTAGAAATCGAAACTAATATTTTGAGTCATGCAACTGGTTCAGCTAGGTGAAACTTTCA 240
consensus_9203#2      ------------------------------------------------------------
consensus_9203#1      ----------------AAAAATGGCGGGGTTGATATTGAATCCCTATGGATCCAGTCCTA 44
                                                                                  

consensus_9203#0      TCGTTTGCTGTGTTAAAATGGAGGTTGGCAAACCTTCTTTAACTAACACTAGTGAAGGTC 300
consensus_9203#2      ------------------------------------------------------------
consensus_9203#1      TTAAGTGTTTTGAACGGTTTTATTTAGACCAAGGAGTTGAATTGGGATGTAAAATGGATG 104
                                                                                  

consensus_9203#0      GTATTGAAATAAATGTTGAGTGGTGAGTGAAAGGTATTCATCTTCAAATAATATATAACT 360
consensus_9203#2      ------------------------------------------------------------
consensus_9203#1      TTCGTGGGCCAAGTAAATATCGACCTTTAGAAATCGAAACTAATATTTTGAGTCATGCAA 164
                                                                                  

consensus_9203#0      TTGTAACGTATATTTAATGTTTTGTGTCAACATATGCTTTCAATATCCCATATATCTCAT 420
consensus_9203#2      ------------------------------------------------------------
consensus_9203#1      CTGGTTCAGCTAGTATTCGTATTGGTGAAACTTTCATCGTTTGCTGTGTTAAAATGGAGG 224
                                                                                  

consensus_9203#0      CTGTATCATTACGTACATTTTTTTACAAAACTG-ACGATTTGTACAAAATCTTTCTCAGT 479
consensus_9203#2      ---------------------------GTGCTT-TCAAACT-TAAGCGTTACTGCCCATT 31
consensus_9203#1      TTGGCAAACCTTCTTTAACTAACACTAGTGAAGGTCGTATTGAAATAGATGTTGAGTG-T 283
                                                         *    *  *     *  *      *

consensus_9203#0      TACCCTACGGCAACTCACCGCTGTAACGAAAAGGCAGCATCCGAACTGGAGGAACGTTTG 539
consensus_9203#2      TACCCTACGGCAACTCACCGCTGTAACGAAAAGGCAGCATCCGAACTGGAGGAACGTTTG 91
consensus_9203#1      TACCCTACGGCAACTCACCGCTGTAACGAAAAGGCAGCATCCGAACTGGAGGAACGTTTG 343
                      ************************************************************

consensus_9203#0      AAGACAACATTGCAATCAGCCTATCAATTGAAGTTTATAGATCTAAGCCCTCTGTGTATC 599
consensus_9203#2      AAGACAACATTGCAATCAGCCTATCAATTGAAGTTTATAGATCTAAGCCCTCTGTGTATC 151
consensus_9203#1      AAGACAACATTGCAATCAGCCTATCAATTGAAGTTTATAGATCTAAGCCCTCTGTGTATC 403
                      ************************************************************

consensus_9203#0      CAACGTGGTCGACAGTGCTGGGTCATCTATATTGATCTGCTTGTCA--------GTTTTT 651
consensus_9203#2      CAACGTGGTCGACAGTGCTGGGTCATCTATATTGATCTGCTTGTCA--------GTTTTT 203
consensus_9203#1      CAACGTGGTCGACAGTGCTGGGTCATCTATATTGATCTGCTTATTTTAGAGGGTGCTGGA 463
                      ****************************************** *          * *   

consensus_9203#0      ATCATACTTAGTTATTTTTCCCAGATTTTAGAGGGTGCTG----GNAACTTACTTGAT-G 706
consensus_9203#2      ATCATACTTAGTTATTTTTCCCAGATTTTAGAGGGTGCTG----GAAACTTACTTGAT-G 258
consensus_9203#1      AACTTACTTGATGCTTCCTCCTTGGTAGTCAAAGCTGCTCTACTAAACGCTACACAGTCA 523
                      * * *****  *  **  ***  * *  *  * * ****       *   ***    *  

consensus_9203#0      CTTCCTNCTTGGTAGT---------------- 722
consensus_9203#2      CTTCCTCCTTGGTAGTCAAAGCTGCTCTACTA 290
consensus_9203#1      AATTCTTTATTATTGTCTGTTTTTCAAAACAA 555
                        * **   *  * **