cluster # 9206

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Schistosoma mansoni
cluster # 9206 cluster # 9206 Sequences # 8 consensus # 5

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9206#0 length = 550 sequences # 1
consensus_9206#1 length = 460 sequences # 2

consensus_9206#2 length = 381 sequences # 3
consensus_9206#3 length = 341 sequences # 1
consensus_9206#4 length = 164 sequences # 1

consensusID : consensus_9206#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 550
fasta sequence

                              [TTACAGAAAAAATTTGATGAACTCGAGGTGGAAGCTAAAGAATGGTCAGTAAAAGTGGCTGAAATACAAAAGAAAGAACGACTTAGACCTTTAAATATTGATACAATTTGCAAAGATGCGAAATCGAAGACGGTTATTAACTCGCCCAAACTTAAATATGAAGAGAATCTAGACTCAACATCAAATTCTGAAGAGGCCGCAGTGAATCGTTTAAAAGAATTTGTTAATAAGCATAATAAAACTATACGAAAATTTGGACTATTACAAAAACCATTAGATTCACAAAATTTTCTTGTTAAATATCCTGACTTAGTATGTGAAGAAACAGCTAATCAACTTGTAATTTGGTGTATTGATTTAGCTATGGAAGAGAAATTTGAATTAATGGAACATGNTTCACATCAGTGTATAGTGATGCAATTTATGCTTGAAATTAGCAAATCACTAAAAAGTTGATCCAAGAGCGTGTATTCGACCATTCTTTGCGAAATCGAAGACGGTTATTAACTCGCCCAAACTTAATATGAAGAGAATCTTGACTCANCATCAA]

[+] EMBL CD144289             [TTACAGAAAAAATTTGATGAACTCGAGGTGGAAGCTAAAGAATGGTCAGTAAAAGTGGCTGAAATACAAAAGAAAGAACGACTTAGACCTTTAAATATTGATACAATTTGCAAAGATGCGAAATCGAAGACGGTTATTAACTCGCCCAAACTTAAATATGAAGAGAATCTAGACTCAACATCAAATTCTGAAGAGGCCGCAGTGAATCGTTTAAAAGAATTTGTTAATAAGCATAATAAAACTATACGAAAATTTGGACTATTACAAAAACCATTAGATTCACAAAATTTTCTTGTTAAATATCCTGACTTAGTATGTGAAGAAACAGCTAATCAACTTGTAATTTGGTGTATTGATTTAGCTATGGAAGAGAAATTTGAATTAATGGAACATGNTTCACATCAGTGTATAGTGATGCAATTTATGCTTGAAATTAGCAAATCACTAAAAAGTTGATCCAAGAGCGTGTATTCGACCATTCTTTGCGAAATCGAAGACGGTTATTAACTCGCCCAAACTTAATATGAAGAGAATCTTGACTCANCATCAA]




>consensus_9206#0
TTACAGAAAAAATTTGATGAACTCGAGGTGGAAGCTAAAGAATGGTCAGTAAAAGTGGCT
GAAATACAAAAGAAAGAACGACTTAGACCTTTAAATATTGATACAATTTGCAAAGATGCG
AAATCGAAGACGGTTATTAACTCGCCCAAACTTAAATATGAAGAGAATCTAGACTCAACA
TCAAATTCTGAAGAGGCCGCAGTGAATCGTTTAAAAGAATTTGTTAATAAGCATAATAAA
ACTATACGAAAATTTGGACTATTACAAAAACCATTAGATTCACAAAATTTTCTTGTTAAA
TATCCTGACTTAGTATGTGAAGAAACAGCTAATCAACTTGTAATTTGGTGTATTGATTTA
GCTATGGAAGAGAAATTTGAATTAATGGAACATGNTTCACATCAGTGTATAGTGATGCAA
TTTATGCTTGAAATTAGCAAATCACTAAAAAGTTGATCCAAGAGCGTGTATTCGACCATT
CTTTGCGAAATCGAAGACGGTTATTAACTCGCCCAAACTTAATATGAAGAGAATCTTGAC
TCANCATCAA

consensusID : consensus_9206#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 460
fasta sequence

                              [ACGTCCTATCGGCTTATGAGCATTGTACGTGTGGCAAGTCGACCAGATTGCATCCCTAACTGCGGTAGAACGCTTGGCTCTGTGGGCCGTGCCAAACAGGCCGAGATCAGATTCGTGTCGGTCCATC--CGGA-GGCTGATTACTTTGCTGCTTTGTGTGCTACGGTGCGCGTTGTGGTGAGGTTACTGCACTCTGACCCGGGTCGATCGTGGGCGGTTTCAGCTGTTAGTGTCGTGCAGCTAGCAACGCGCGAGGACATGTTCCACGTTGCGTCAAGCGGCTGTACTTCCATGGTCTGGCGCGCGACGGCTAACTCAGAACTGGCACGGACCAGGGGAATCCGACTGTCTAATTAAGACAAAGCATTGCGATGTCCACTGATTGGTTTTGACGCAATGTGATTTCTGCCCAGTGCTCTGAATGTCAAAGTGAAGAAATTCACCAAGCGCGGGTAAACGGCGG]

[+] EMBL CD193250             [ACGTCCTATCGGCTTATGAGCATTGTACGTGTGGCAAGTCGACCAGATTGCATCCCTAACTGCGGTAGAACGCTTGGCTCTGTGGGCCGTGCCAAACAGGCCGAGATCAGATTCGTGTCGGTCCATC  CGGA GGCTGATTACTTTGCTGCTTTGTGTGCTACGGTGCGCGTTGTGGTGAGGTTACTGCACTCTGACCCGGGTCGATCGTGGGCGGTTTCAGCTGTTAGTGTCGTGCAGCTAGCAACGCGCGAGGACATGTTCCACGTTGCGTCAAGCGGCTGTACTTCCATGGTCTGGCGCGCGACGGCTAACTCAGAACTGGCACGGACCAGGGGAATCCGACTGTCTAATTAAGACAAAGCATTGCGATGTCCACTGATTGGTTTTGACGCAATGTGATTTCTGCCCAGTGCTCTGAATGTCAAAGTGAAGAAATTCACCAAGCGCGGGTAAACGGCGG]
[+] EMBL BG931980             [                                                                                                               gatggtaCGGT GATCGACGGAGGGCTGGTTTCTTTGCTGCTTTGTGTGCTTCGGTGCGCGTTGTGGTGAGGTTACTGGACTCTGATCCGGGTCGATCGTGGGCGGTTTCAGCTGTTAGTGTCGTGCAGCTAGCAACGCGCGAGGACATGTTCCACGTTGCGTCAAGCGGCTGTACTTCCATGGTCTGGCGCGCGACGGCTAACTCAGAACTGGCACGGACCAGGGGAATCCGACTGTCTAATTAAAACAAAGCATTGCGATGTCCACTGATTGGTTTTGACGCAATGTGATTTCTGCCCGGTGCTCTGAATGTCAAAGTGA                              ]




>consensus_9206#1
ACGTCCTATCGGCTTATGAGCATTGTACGTGTGGCAAGTCGACCAGATTGCATCCCTAAC
TGCGGTAGAACGCTTGGCTCTGTGGGCCGTGCCAAACAGGCCGAGATCAGATTCGTGTCG
GTCCATCCGGAGGCTGATTACTTTGCTGCTTTGTGTGCTACGGTGCGCGTTGTGGTGAGG
TTACTGCACTCTGACCCGGGTCGATCGTGGGCGGTTTCAGCTGTTAGTGTCGTGCAGCTA
GCAACGCGCGAGGACATGTTCCACGTTGCGTCAAGCGGCTGTACTTCCATGGTCTGGCGC
GCGACGGCTAACTCAGAACTGGCACGGACCAGGGGAATCCGACTGTCTAATTAAGACAAA
GCATTGCGATGTCCACTGATTGGTTTTGACGCAATGTGATTTCTGCCCAGTGCTCTGAAT
GTCAAAGTGAAGAAATTCACCAAGCGCGGGTAAACGGCGG

consensusID : consensus_9206#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 381
fasta sequence

                              [CCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCTCATTGCGTCAAAACCAATCAGTGGACATCGCAATGCTTTGTTTTAATTAGACAGTCGGATTCCCCTGGTCCGTGCCAGCTCTGAGTTAGCCGTCGCGCGCCAGACCATGGAAGTACAGCCGCTTGACGCAACGTGGAACATGTCCTCGCGCGTTGCTAGCTGCACGACACTAACAGCTGAAACCGCCCACGATCGACCCGGGTCAGAGTCCAGTAACCTCACCACAACGCGCACCGAAGCACACAAAGCAGCAAAGAAACCAGCCCCCAACTGGACCGACACGTATCTGATCTCGGACATTGTTGTTTGTCCGCG]

[+] EMBL CD162480             [CCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCTCATTGCGTCAAAACCAATCAGTGGACATCGCAATGCTTTGTTTTAATTAGACAGTCGGATTCCCCTGGTCCGTGCCAGCTCTGAGTTAGCCGTCGCGCGCCAGACCATGGAAGTACAGCCGCTTGACGCAACGTGGAACATGTCCTCGCGCGTTGCTAGCTGCACGACACTAACAGCTGANACCGCCCACGATCGACCCGGGTCAGAGTCCAGTAACCTCACCACAACGCGCACCGAAGCACA                                                                        ]
[-] EMBL CD184134             [ CCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAAAACCAATCAGTGGACATCGCAATGCTTTGTTTTAATTAGACAGTCGGATTCCCCTGGTCCGTGCCAGTTCTGAGTTAGCCGTCGCGCGCCAGACCATGGAAGTACAGCCGCTTGACACAACGTGGAACATGTCCTCGCGCGTTGCTAGCTGCACGACACTAACAGCTGAAACCGCCCACGATCGACCCGGGTCAGAGTCCAGTAACCTCACCACAACGCGCACCGAAGCACACAAAGCAGCAAAGAAACCAGCCCCCAACTGGACCGACACGT                               ]
[+] EMBL CD184783             [                                                                                                                                                                GCGCGCCAGACCATGGAAGTACAGCCGCTTGACGCAACGTGGAACATGTCCTCGCGCGTTGCTAGCTGCACGACACTAACAGCTGAAACCGCCCACGATCGACCCGGGTCAGAGTCCAGTAACCTCACCACAACGCGCACCGAAGCACACAAAGCAGCAAAGAAACCAGCCCCCAACTGGACCGACACGTATCTGATCTCGGACATTGTTGTTTGTCCGCG]




>consensus_9206#2
CCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAG
AAATCTCATTGCGTCAAAACCAATCAGTGGACATCGCAATGCTTTGTTTTAATTAGACAG
TCGGATTCCCCTGGTCCGTGCCAGCTCTGAGTTAGCCGTCGCGCGCCAGACCATGGAAGT
ACAGCCGCTTGACGCAACGTGGAACATGTCCTCGCGCGTTGCTAGCTGCACGACACTAAC
AGCTGAAACCGCCCACGATCGACCCGGGTCAGAGTCCAGTAACCTCACCACAACGCGCAC
CGAAGCACACAAAGCAGCAAAGAAACCAGCCCCCAACTGGACCGACACGTATCTGATCTC
GGACATTGTTGTTTGTCCGCG

consensusID : consensus_9206#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 341
fasta sequence

                              [TGGTACAACACTCATGAAATACCACTGCCCTTATACTCTACTCCCTGATTCTGTGCTGACTGAACTAACCATAAGACACCCTCATAACCATTTGACGGATGCACCGCCCCTCTCATAACTCCCTCGCCATGACATGGTCTTGATAAATGATCGCACACCACATCAAGACTCAAACACCACAATTCGCACCACGACTCATCTGACATGAACAATATATCGAAGCACGCAGCGATAGACCACGCACCCCGAAATGTGCTTTGAACCAAAATACAATTTCATTCCCGTTTCACTGAATAACTAAAGAAACAATGATAGCAGTGGTATTTCATTTGCGCTGGACA]

[+] EMBL CD194642             [TGGTACAACACTCATGAAATACCACTGCCCTTATACTCTACTCCCTGATTCTGTGCTGACTGAACTAACCATAAGACACCCTCATAACCATTTGACGGATGCACCGCCCCTCTCATAACTCCCTCGCCATGACATGGTCTTGATAAATGATCGCACACCACATCAAGACTCAAACACCACAATTCGCACCACGACTCATCTGACATGAACAATATATCGAAGCACGCAGCGATAGACCACGCACCCCGAAATGTGCTTTGAACCAAAATACAATTTCATTCCCGTTTCACTGAATAACTAAAGAAACAATGATAGCAGTGGTATTTCATTTGCGCTGGACA]




>consensus_9206#3
TGGTACAACACTCATGAAATACCACTGCCCTTATACTCTACTCCCTGATTCTGTGCTGAC
TGAACTAACCATAAGACACCCTCATAACCATTTGACGGATGCACCGCCCCTCTCATAACT
CCCTCGCCATGACATGGTCTTGATAAATGATCGCACACCACATCAAGACTCAAACACCAC
AATTCGCACCACGACTCATCTGACATGAACAATATATCGAAGCACGCAGCGATAGACCAC
GCACCCCGAAATGTGCTTTGAACCAAAATACAATTTCATTCCCGTTTCACTGAATAACTA
AAGAAACAATGATAGCAGTGGTATTTCATTTGCGCTGGACA

consensusID : consensus_9206#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 164
fasta sequence

                              [CCTCTTCCGGCACACGGGGGTTGGGTTATATGCTGCTTTGCGCACTTCATTGCACCTTGTGGTGAGGTTACTGGACTCTGACCCGGGTCGATCGTGGGCGGTTTCAGCTGTTAGTGTCGTGCAGCTAGCAACGCGCGAGGACATGTTCCACGTTGCGTCAAGCG]

[+] EMBL CD092627             [CCTCTTCCGGCACACGGGGGTTGGGTTATATGCTGCTTTGCGCACTTCATTGCACCTTGTGGTGAGGTTACTGGACTCTGACCCGGGTCGATCGTGGGCGGTTTCAGCTGTTAGTGTCGTGCAGCTAGCAACGCGCGAGGACATGTTCCACGTTGCGTCAAGCG]




>consensus_9206#4
CCTCTTCCGGCACACGGGGGTTGGGTTATATGCTGCTTTGCGCACTTCATTGCACCTTGT
GGTGAGGTTACTGGACTCTGACCCGGGTCGATCGTGGGCGGTTTCAGCTGTTAGTGTCGT
GCAGCTAGCAACGCGCGAGGACATGTTCCACGTTGCGTCAAGCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9206#1      ------------------------ACGTCCTATCGGCTTATGAGCATTGTACGTGTGGCA 36
consensus_9206#4      ------------------------------------------------------------
consensus_9206#3      ------------------------------------------------------------
consensus_9206#0      TTACAGAAAAAATTTGATGAACTCGAGGTGGAAGCTAAAGAATGGTCAGTAAAAGTGGCT 60
consensus_9206#2      ------------------------------------------------------------
                                                                                  

consensus_9206#1      AGTCGACCAGATTGCATCCCTAACTGCGGTAGAACGCTTGGCTCTGTGGGCCGTGCCAAA 96
consensus_9206#4      ------------------------------------------------------------
consensus_9206#3      ------------------------------------------------------------
consensus_9206#0      GAAATACAAAAGAAAGAACGACTTAGACCTTTAAATATTGATACAATTTGCAAAGATGCG 120
consensus_9206#2      -----------------------------------------CCCGCCGTTTACCCGCGCT 19
                                                                                  

consensus_9206#1      CAGGCCGAGATCAGATTCGTGTCGGTCCATCCGGAGGCTGATTACTTTGCTGCTTTGTGT 156
consensus_9206#4      ---------------CCTCTTCCGGCACA--CGGGGGTTGGGTTATATGCTGCTTTGCGC 43
consensus_9206#3      -----------------TGGTACAACACTCATGAAATACCACTGCCCTTATACTCTACTC 43
consensus_9206#0      AAATCGAAGACGGTTATTAACTCGCCCAAACTTAAATATGAAGAGAATCTAGACTCAACA 180
consensus_9206#2      TGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCTCATTGCGTCAAAA 79
                                            *                                     

consensus_9206#1      GCT---ACGGTGCGCGTTGTGGTGA---GGTTACTGCACTCTGACC--CGGGT-CGATCG 207
consensus_9206#4      ACT---TCATTGCACCTTGTGGTGA---GGTTACTGGACTCTGACC--CGGGT-CGATCG 94
consensus_9206#3      CCTGATTCTGTGCTGACTGAACTAA---CCATAAGACACCCTCATAA-CCATT-TGACGG 98
consensus_9206#0      TCAAATTCTGAAGAGGCCGCAGTGAATCGTTTAAAAGAATTTGTTAA-TAAGCATAATAA 239
consensus_9206#2      CCAA--TCAGTGGACATCGCAATGC----TTTGTTTTAATTAGACAGTCGGATTCCCCTG 133
                       *     *          *   *        *     *                      

consensus_9206#1      ---TGGGCGG---TTT---CAGCTGTTAGTGTCGTGCAGCTAGCAACGC---GCGAGGAC 255
consensus_9206#4      ---TGGGCGG---TTT---CAGCTGTTAGTGTCGTGCAGCTAGCAACGC---GCGAGGAC 142
consensus_9206#3      A--TGCACCG---CCC---CTCTCATAACTCCCTCGCCA-TGACATGGT---CTTGATAA 146
consensus_9206#0      AACTATACGAAAATTTGGACTATTACAAAAACCATTAGATTCACAAAATTTTCTTGTTAA 299
consensus_9206#2      GTCCGTGCCA---GCT---CTGAGTTAGCCGTCGCGCGCCAGACCATGG---AAGTACAG 184
                             *           *            *          *              * 

consensus_9206#1      ATGTTC-CACGTTGCGTCAAGCGGCTGTACTTCCATGGTCTGGCGCGCGACGGCTAACTC 314
consensus_9206#4      ATGTTC-CACGTTGCGTCAAGCG------------------------------------- 164
consensus_9206#3      ATGATCGCACACCACATCAAG--ACTCAAACACCACAATTCGCACCACGACTCATCTGAC 204
consensus_9206#0      ATATCCTGACTTAGTATGTGAAGAAACAGCTAAT-CAACTTGTAATTTGGTGTAT-TGAT 357
consensus_9206#2      CCGCTT-GACGCAACGTGGAACATGTCCTCGCGCGTTGCTAGCTGCACGACACTAACAGC 243
                              **      *                                           

consensus_9206#1      AGAACTGGCACGGACCAGGGGAATCCGACTGTCTAATTAAGACA--A-AGCATTGCGATG 371
consensus_9206#4      ------------------------------------------------------------
consensus_9206#3      ATGAACAATATATCGAAGCACGCAGCGATAGACCACGCACCCCG--A-AATGTGCTTTGA 261
consensus_9206#0      TTAGCTATGGAAGAGAAATTTGAATTAATGGAACATGNTTCACA--TCAGTGTATAGTGA 415
consensus_9206#2      TGAAACCGCCCACGATCGACCCGGGTCAGAGTCCAGTAACCTCACCACAACGCGCACCGA 303
                                                                                  

consensus_9206#1      TCCACTGATTGGTTTTG-ACGCAATGTGATTTCTGCCCAGTGCTCTGAATGTCAAAGTGA 430
consensus_9206#4      ------------------------------------------------------------
consensus_9206#3      ACCAAAATACAATTTCA-TTCCCGTTTCACTG--AATAACTAAAGAAACAATGATAGCAG 318
consensus_9206#0      TGCAATTTATGCTTGAAATTAGCAAATCACTA--AAAAGTTGATCCAAGAGCGTGTATTC 473
consensus_9206#2      AGCACACAAAGCAGCAAAGAAACCAGCCCCCA--ACTGGACCGACACGTATCTGATCTCG 361
                                                                                  

consensus_9206#1      AGAAATTCACCAAGCGCGGGTAAACGGCGG------------------------------ 460
consensus_9206#4      ------------------------------------------------------------
consensus_9206#3      TGGTATTTCATTTGCGCTGGACA------------------------------------- 341
consensus_9206#0      GACCATTCTTTGCGAAATCGAAGACGGTTATTAACTCGCCCAAACTTAATATGAAGAGAA 533
consensus_9206#2      GACATTGTTGTTTGTCCGCG---------------------------------------- 381
                                                                                  

consensus_9206#1      -----------------
consensus_9206#4      -----------------
consensus_9206#3      -----------------
consensus_9206#0      TCTTGACTCANCATCAA 550
consensus_9206#2      -----------------