cluster # 9207

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Schistosoma mansoni
cluster # 9207 cluster # 9207 Sequences # 8 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9207#0 length = 720 sequences # 5

consensus_9207#1 length = 483 sequences # 2
consensus_9207#2 length = 477 sequences # 1

consensusID : consensus_9207#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 720
fasta sequence

                              [AAATGAAATTACAAACAACGCTTAAATAAACGCTGAACATAGCTTTTGTGTATAAAACTGTCCCATTTAAGCGTAACCACCTGGGCCGTGGAGAACAGATTAATAATTCATAAGCAGCCATTACCAAAACAAATCGCCTAGGTAATCGGAATAAGAGTTTTAGAAGGTAACACCGAGTGTCTACTTGGAAATATAAATGGTGTTCAGGTCCACATGCAAAAGAATCTACTTAGAAATAAAAACGACAGATTAGTGCTGGAGTAATTTCAGATGTTAAAAGTCTATAGCTACAAACATTAACATAGTCAGCAGTAAATGTACGATACTGAATTCTTGTCATTAGATTGTCGATAAGGTCGCGATGAGTCTAGAACATCAAGGAGGAGGCTTCTTCTGAACTTCGGACATACCTTTGCGAAATGCTTCTTTCACTTGGCTAATAAGACCAGTCCAATCACGTGTTTGCCTTGTAGATGTATCAAGCATTTTATCTTTTGCTTCCAGAAACATGCGTACTGTTGTGCGGGCGACATATCTCATAGGTTTACTATCTG----CTTTCGTGTTAGCTCAGGGTTAGAAAAATAGGTTATTAGTATGCGTATCCACAACATATCAGTTCGTGTGTATCTGTCTTTGGGGTGTAACACACGTTCAGTCAGACCGTCTTAAACGCTTTGAAAACTGATACTGTCTGTAAA-----GCGTAACGTATTCATTCAACCG]

[-] EMBL CD091437             [AAATGAAATTACAAACAACGCTTAAATAAACGCTGAACATAGCTTTTGTGTATAAAACTGTCCCATTTAAGCGTAACCACCTGGGCCGTGGAGAACAGATTAATAATTCATAAGCAGCCATTACCAAAACAAATCGCCTAGGTAATCGGAATAAGAGTTTTAGAAGGTAACACCGAGTGTCTACTTGGAAATATAAATGGTGTTCAGGTCCACATGCAAAAGAATCTACTTAGAAATAAAAACGACAGATTAGTGCTGGAGTAATTTCAGATGTTAAAAGTCTATAGCTACAAACATTAACATAGTCAGCAGTAAATGTACGATACTGAATTCTTGTCATTAGATTGTCGATAAGGTCGCGATGAGTTTAGAACATCAAGGAGGAGGCTTTTTTTGAACTT                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD178853             [                                                                                                                                                                                GTGTCTACTTGGAAATATAAATGGTGTTCAGGTCCACATGCAAAAGAGTCTACTTAGAAATAAAAACGACAGATTAGTGCTGGAGTAATTTCAGATGTTAAAAGTCTATAGCTACAAACATTAACATAGTCAGCAGTAAATGTACGATACTGAATTCTTGTCATTAGATTGTCGATAAGGTCGCGATGAGTCTAGAACATCAAGGAGGAGGCTTCTTCTGAACTTCGGACATACCTTTGCGAAATGCTTCTTTCACTTGGCTAATAAGACCAGTCCAATCACGTGTTTGCCTTGTAGATGTATCAAGCATTTTATCTTTTGCTTCCAGAAACATGCGTACTGTTGTGCGGGCGACATATCTCATAGGTTTACTATCTG    CTTTCGTGTTAGCTCAGGGTTAGAAAAATAGGTTATTAGTATGCGTATCCACAACATATCAGTTCGTGTGTATCTGTCTTTGGGGTGTAACACACGTTCAGTCAGACCGTCTTAAACGCTTTTGAAACTGATACTGTCTGTAAA     GCGTAACGTATTCATTCAACC ]
[+] EMBL CD179186             [                                                                                                                                                                                GTGTCTACTTGGAAATATAAATGGTGTTCAGGTCCACATGCAAAAGAATCTACTTAGAAATAAAAACGACAGATTAGTGCTGGAGTAATTTCAGATGTTAAAAGTCTATAGCTACAAACATTAACATAGTCAGCAGTAAATGTACGATACTGAATTCTTGTCATTAGATTGTCGATAAGGTCGCGATGAGTCTAGAACATCAAGGAGGGGGCTTCTTCTGAACTTCGGACATACCTTTGCGAAATGCTTCTTTCACTTGGCTAATAAGACCAGTCCAATCACGTGTTAGCCTTGTAGATGTATCAAGCATTTTATCTTTTGCCTCCAGAAACATGCGTACTGTTGTGCGGGCGACATATCTCATAGGTTTACTATCTG    CTTTCGTGTTAGCTCAGGGTTAGAAAAATAGGTTATTAGTATGCGTATCCACAACATATCAGTTCGTGTGTATCTGTCTTTGGGGTG AACACACGTTCAGGCAGACCGTCTTAAACGCTTTG AAACTGATACTGTCTGTAAA     GCGTAACGTATTCATTCAACC ]
[-] EMBL CD133505             [                                                                                                                                                                                                                                                                             GATGTTAAAAGTCTATAGCTACAAACATTAACATAGTCAGCAGTAAATGTACGATACTGAATTCTTGTCATTAGATTGTCGATAAGGTCGCGATGAGTCTAGAACATCAAGGAGGAGGCTTCTTCTGAACTTCGGACATACCTTTGCGAAATGCTTCTTTCACTTGGCTAATAAGACCAGTCCAATCACGTGTTTGCCTTGTAGATGTATCAAGCATTTTATCTTTTGCTTCCAGAAACATGCGTACTGTTGTGCGGGCGACATATCTCATAGGTTTACTATCTGCTAACTTTCGTGTTAGCTCAGGGTTAGAAAAATAGGTTATTAGTATGCGTATCCACAACATATCAGTTCGTGTGTATCTGTCTTTGGGGTGTAACACACGTTCAGTCAGACCGTCTTAAACGCTTTGAAAACTGATACTGTCTGTAAA     GCGTAACGTATTCATTCAACCG]
[-] EMBL CD179472             [                                                                                                                                                                                                                                                                                                                                                                     CGCGATGAGTCTAGAACATCAAGGAGGAGGCTTCCTCTGAACTTCGGACATACCTTTGCGAAATGCTTCTTTCACTTGGCTAATAAGACCAGTCCAATCACGTGTTTGCCTTGTAGATGTATCAAGCATTTTATCTTTTGCTTCCAGAAACATGCGTACTGTTGTGCGGGCGACATATCTCATAGGTTTACTATCTG    CTTTCGTGTTAGCTCAGGGTTAGAAAAATAGGTTATTAGTATGCGTATCCACAACATATCAGTTCGTGTGTATCTGTCTTTGGGGTGTAACACACGTTCAGTCAGACCGTCTTAAACGCTTTGAAAACTGATACTGTCTGTAAACTTACGCGTAACGTATTCATTCAACCG]




>consensus_9207#0
AAATGAAATTACAAACAACGCTTAAATAAACGCTGAACATAGCTTTTGTGTATAAAACTG
TCCCATTTAAGCGTAACCACCTGGGCCGTGGAGAACAGATTAATAATTCATAAGCAGCCA
TTACCAAAACAAATCGCCTAGGTAATCGGAATAAGAGTTTTAGAAGGTAACACCGAGTGT
CTACTTGGAAATATAAATGGTGTTCAGGTCCACATGCAAAAGAATCTACTTAGAAATAAA
AACGACAGATTAGTGCTGGAGTAATTTCAGATGTTAAAAGTCTATAGCTACAAACATTAA
CATAGTCAGCAGTAAATGTACGATACTGAATTCTTGTCATTAGATTGTCGATAAGGTCGC
GATGAGTCTAGAACATCAAGGAGGAGGCTTCTTCTGAACTTCGGACATACCTTTGCGAAA
TGCTTCTTTCACTTGGCTAATAAGACCAGTCCAATCACGTGTTTGCCTTGTAGATGTATC
AAGCATTTTATCTTTTGCTTCCAGAAACATGCGTACTGTTGTGCGGGCGACATATCTCAT
AGGTTTACTATCTGCTTTCGTGTTAGCTCAGGGTTAGAAAAATAGGTTATTAGTATGCGT
ATCCACAACATATCAGTTCGTGTGTATCTGTCTTTGGGGTGTAACACACGTTCAGTCAGA
CCGTCTTAAACGCTTTGAAAACTGATACTGTCTGTAAAGCGTAACGTATTCATTCAACCG

consensusID : consensus_9207#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 483
fasta sequence

                              [TAATTTCAGATGTTAAAAGTCTATAGCTACAAAGATTAACATAGTCAGCAGTAAATGTACGATACTGAATTCTTGTCATTAGATTGTCGATAAGGTCGCGATGAGTCTAGAACATCAAGGAGGAGGAGGCTTCTTCTGAACTTCGGACATACCTTTGCGAAATGCTTCTTTCACTTGGCTAATAAGACCAGTCCAATCACGTGTTTGCCTTGTAGATGTATCAAGCATTTTATCTTTTGCTTCCAGAAACATGCGTACTGTTGTGCGGGCGACATATCTCATAGGTTTACTATCTGCTAACTTTCGTGTTAGCTCAGGGTTAGAAAAATAGGTTATTAGTATGCGTATCCACAACATATCAGTTCGTGTGTATCTGTCTTTGGGGTGTAACACACGTTCAGTCAGACCGTCTTAAACGCTTTGAAAACTGATACTGTCTGTAAACTTACGCGTAACGTCCTCGTGCCGAATTNCTGGCCTCGA]

[-] EMBL CD079315             [TAATTTCAGATGTTAAAAGTCTATAGCTACAAAGATTAACATAGTCAGCAGTAAATGTACGATACTGAATTCTTGTCATTAGATTGTCGATAAGGTCGCGATGAGTCTAGAACATCAAGGAGGAGGAGGCTTCTTCTGAACTTCGGACATACCTTTGCGAAATGCTTCTTTCACTTGGCTAATAAGACCAGTCCAATCACGTGTTTGCCTTGTAGATGTATCAAGCATTTTATCTTTTGCTTCCAGAAACATGCGTACTGTTGTGCGGGCGACATATCTCATAGGTTTACTATCTGCTAACTTTCGTGTTAGCTCAGGGTTAGAAAAATAGGTTATTAGTATGCGTATCCACAACATATCAGTTCGTGTGTATCTGTCTTTGGGGTGTAACACACGTTCAGTCAGACCGTCTTAAACGCTTTGAAAACTGATACTGTCTGTAAACTTACGCGTAACGTCCTCGTGCCGAATTNCTGGCCTCGA]
[-] EMBL CD084182             [TAATTTCAGATGTTAAAAGTCTATAGCTACAAACATTAACATAGTCAGCAGTAAATGTACGATACTGAATTCTTGTCATTAGATTGTCGATAAGGTCGCGATGAGTCTAGAACATCA   AGGAGGAGGCTTCTTCTGAACTTCGGACATACCTTTGCGAAATGCTTCTTTCACTTGGCTAATAAGACCAGTCCAATCACGTGTTTGCCTTGTAGATGTATCAAGCATTTTATCTTTTGCTTCCAGAAACATGCGTACTGTTGTGCGGGCGACATATCTCATAGGTTTACTATCTGCTAACTTTCGTGTTAGCTCAGGGTTAGAAAAATAGGTTATTAGTATGCGTATCCACAACATATCAGTTCGTGTGTATCTGTCTTTGGGGTGTAACACACGTTCAGTCAGACCGTCTTAAACGCTTTGAAAACTGATACTGTCTGTAAAgcg                                    ]




>consensus_9207#1
TAATTTCAGATGTTAAAAGTCTATAGCTACAAAGATTAACATAGTCAGCAGTAAATGTAC
GATACTGAATTCTTGTCATTAGATTGTCGATAAGGTCGCGATGAGTCTAGAACATCAAGG
AGGAGGAGGCTTCTTCTGAACTTCGGACATACCTTTGCGAAATGCTTCTTTCACTTGGCT
AATAAGACCAGTCCAATCACGTGTTTGCCTTGTAGATGTATCAAGCATTTTATCTTTTGC
TTCCAGAAACATGCGTACTGTTGTGCGGGCGACATATCTCATAGGTTTACTATCTGCTAA
CTTTCGTGTTAGCTCAGGGTTAGAAAAATAGGTTATTAGTATGCGTATCCACAACATATC
AGTTCGTGTGTATCTGTCTTTGGGGTGTAACACACGTTCAGTCAGACCGTCTTAAACGCT
TTGAAAACTGATACTGTCTGTAAACTTACGCGTAACGTCCTCGTGCCGAATTNCTGGCCT
CGA

consensusID : consensus_9207#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 477
fasta sequence

                              [ACTATTAGGGTTGTCCAATCACTATTTTGTAACAAAAGAATTAAGTGAAAATGAATGTTGATACGTCCTTATATCAGTTGATACAGGTAAATCCAAAGATGGGAACGAAACAGGACACACTAAATTCACGTTCTATCCCACATGGTACATCATATGGAAAGGCCAATCTATCTTTGCGAAATGCTTCTTTCACTTGGCTAATAAGACCAGTCCAATCACGTGTTTGCCTTGTAGATGTATCAAGCATTTTATCTTTTGCTTCCAGAAACATGCGTACTGTTGTGCGGGCGACATATCTCATAGGTTTACTATCTGCTAACTTTCGTGTTAGCTCAGGGTTAGAAAAATAGGTTATTAGTATGCGTATCCACAACATATCAGTTCGTGTGTATCTGTCTTTGGGGTGTAACACACGTTCAGTCAGACCGTCTTAAACGCTTTGAAAACTGATACTGTCTGTAAACTTACGCGTAACGT]

[+] EMBL CD097959             [ACTATTAGGGTTGTCCAATCACTATTTTGTAACAAAAGAATTAAGTGAAAATGAATGTTGATACGTCCTTATATCAGTTGATACAGGTAAATCCAAAGATGGGAACGAAACAGGACACACTAAATTCACGTTCTATCCCACATGGTACATCATATGGAAAGGCCAATCTATCTTTGCGAAATGCTTCTTTCACTTGGCTAATAAGACCAGTCCAATCACGTGTTTGCCTTGTAGATGTATCAAGCATTTTATCTTTTGCTTCCAGAAACATGCGTACTGTTGTGCGGGCGACATATCTCATAGGTTTACTATCTGCTAACTTTCGTGTTAGCTCAGGGTTAGAAAAATAGGTTATTAGTATGCGTATCCACAACATATCAGTTCGTGTGTATCTGTCTTTGGGGTGTAACACACGTTCAGTCAGACCGTCTTAAACGCTTTGAAAACTGATACTGTCTGTAAACTTACGCGTAACGT]




>consensus_9207#2
ACTATTAGGGTTGTCCAATCACTATTTTGTAACAAAAGAATTAAGTGAAAATGAATGTTG
ATACGTCCTTATATCAGTTGATACAGGTAAATCCAAAGATGGGAACGAAACAGGACACAC
TAAATTCACGTTCTATCCCACATGGTACATCATATGGAAAGGCCAATCTATCTTTGCGAA
ATGCTTCTTTCACTTGGCTAATAAGACCAGTCCAATCACGTGTTTGCCTTGTAGATGTAT
CAAGCATTTTATCTTTTGCTTCCAGAAACATGCGTACTGTTGTGCGGGCGACATATCTCA
TAGGTTTACTATCTGCTAACTTTCGTGTTAGCTCAGGGTTAGAAAAATAGGTTATTAGTA
TGCGTATCCACAACATATCAGTTCGTGTGTATCTGTCTTTGGGGTGTAACACACGTTCAG
TCAGACCGTCTTAAACGCTTTGAAAACTGATACTGTCTGTAAACTTACGCGTAACGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9207#0      AAATGAAATTACAAACAACGCTTAAATAAACGCTGAACATAGCTTTTGTGTATAAAACTG 60
consensus_9207#1      ------------------------------------------------------------
consensus_9207#2      ------------------------------------------------------------
                                                                                  

consensus_9207#0      TCCCATTTAAGCGTAACCACCTGGGCCGTGGAGAACAGATTAATAATTCATAAGCAGCCA 120
consensus_9207#1      ------------------------------------------------------------
consensus_9207#2      ------------------------------------------------------------
                                                                                  

consensus_9207#0      TTACCAAAACAAATCGCCTAGGTAATCGGAATAAGAGTTTTAGAAGGTAACACCGAGTGT 180
consensus_9207#1      ------------------------------------------------------------
consensus_9207#2      ------------------------------------------------------------
                                                                                  

consensus_9207#0      CTACTTGGAAATATAAATGGTGTTCAGGTCCACATGCAAAAGAATCTACTTAGAAATAAA 240
consensus_9207#1      ------------------------------------------------------------
consensus_9207#2      ------------------------------------------------------------
                                                                                  

consensus_9207#0      AACGACAGATTAGTGCTGGAGTAATTTCAGATGTTAAAAGTCTA-TAGCTACAAACATTA 299
consensus_9207#1      ---------------------TAATTTCAGATGTTAAAAGTCTA-TAGCTACAAAGATTA 38
consensus_9207#2      ACTATTAGGGTTGTCCAATCACTATTTTGTAACAAAAGAATTAAGTGAAAATGAATGTTG 60
                                             ****   *    ** * *  * *    *  **  ** 

consensus_9207#0      ACATAGTCAGCAGTAAATGTACGATACTGAATTCTTGTCATTAGATTGTCGATAAGGTCG 359
consensus_9207#1      ACATAGTCAGCAGTAAATGTACGATACTGAATTCTTGTCATTAGATTGTCGATAAGGTCG 98
consensus_9207#2      ATACGTCCTTATATCAGT-TGATACAGGTAAATCCAAAGATGGGAACG--AAACAGGACA 117
                      * *    *     * * * *   * *   ** **     **  **  *   *  *** * 

consensus_9207#0      CGATGAGTCTAGAACATCAAGGAGGAGG---CTTCTTCTGAACTTCGGACATACCTTTGC 416
consensus_9207#1      CGATGAGTCTAGAACATCAAGGAGGAGGAGGCTTCTTCTGAACTTCGGACATACCTTTGC 158
consensus_9207#2      CACTAAATTCACGTTCTATCCCACATGGTACATCATATGGAAAGGCCAATCTATCTTTGC 177
                      *  * * *  *     *     *   **    *  *   ***   *  *  ** ******

consensus_9207#0      GAAATGCTTCTTTCACTTGGCTAATAAGACCAGTCCAATCACGTGTTTGCCTTGTAGATG 476
consensus_9207#1      GAAATGCTTCTTTCACTTGGCTAATAAGACCAGTCCAATCACGTGTTTGCCTTGTAGATG 218
consensus_9207#2      GAAATGCTTCTTTCACTTGGCTAATAAGACCAGTCCAATCACGTGTTTGCCTTGTAGATG 237
                      ************************************************************

consensus_9207#0      TATCAAGCATTTTATCTTTTGCTTCCAGAAACATGCGTACTGTTGTGCGGGCGACATATC 536
consensus_9207#1      TATCAAGCATTTTATCTTTTGCTTCCAGAAACATGCGTACTGTTGTGCGGGCGACATATC 278
consensus_9207#2      TATCAAGCATTTTATCTTTTGCTTCCAGAAACATGCGTACTGTTGTGCGGGCGACATATC 297
                      ************************************************************

consensus_9207#0      TCATAGGTTTACTATCTGCT----TTCGTGTTAGCTCAGGGTTAGAAAAATAGGTTATTA 592
consensus_9207#1      TCATAGGTTTACTATCTGCTAACTTTCGTGTTAGCTCAGGGTTAGAAAAATAGGTTATTA 338
consensus_9207#2      TCATAGGTTTACTATCTGCTAACTTTCGTGTTAGCTCAGGGTTAGAAAAATAGGTTATTA 357
                      ********************    ************************************

consensus_9207#0      GTATGCGTATCCACAACATATCAGTTCGTGTGTATCTGTCTTTGGGGTGTAACACACGTT 652
consensus_9207#1      GTATGCGTATCCACAACATATCAGTTCGTGTGTATCTGTCTTTGGGGTGTAACACACGTT 398
consensus_9207#2      GTATGCGTATCCACAACATATCAGTTCGTGTGTATCTGTCTTTGGGGTGTAACACACGTT 417
                      ************************************************************

consensus_9207#0      CAGTCAGACCGTCTTAAACGCTTTGAAAACTGATACTGTCTGTAAA-----GCGTAACGT 707
consensus_9207#1      CAGTCAGACCGTCTTAAACGCTTTGAAAACTGATACTGTCTGTAAACTTACGCGTAACGT 458
consensus_9207#2      CAGTCAGACCGTCTTAAACGCTTTGAAAACTGATACTGTCTGTAAACTTACGCGTAACGT 477
                      **********************************************     *********

consensus_9207#0      ATTCATTC--AACCG---------- 720
consensus_9207#1      CCTCGTGCCGAATTNCTGGCCTCGA 483
consensus_9207#2      -------------------------