cluster # 9221

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Schistosoma mansoni
cluster # 9221 cluster # 9221 Sequences # 9 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9221#0 length = 626 sequences # 1

consensus_9221#1 length = 579 sequences # 8

consensusID : consensus_9221#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 626
fasta sequence

                              [TTCTGATAATAGGTAGTACTGGAATTTCAACCAGTTGTCCATCGACTACGACTTTCGTCCTCGCCTTAGGTCCCGACTTACCCAGGGCAGATCAGCTTTACCCTGGAAACCTTGGATATTCGGCCTAGAAGATTCTCACTTCTATCTCGCTACTCATTCCGGCATTCTCACTTGTAATTACTCCACAGCTCCTTACGGTACTGCTTCTGCGTTGTTACAACGCTCCTCTACCAATTGATCTAAGATCAATTCCATAGCTTCGGTGGTATGTTTTAGCCCCGGACATTTTCGGCGCAAGATCTCTCGACTAGTGAGCTATTACGCACTCTTTGAATGTATGGCTGCTTCTAAGCCAACATCCTAGTTGTCTTCGAAATCTCACATCCTTTTCCACTTAACATACACTTTGGGACCTTAGCTGATGGTCTGGGCTCTTTCCCTTTTGACCATGGGTCTTATCACTCATAGTCTGACTGCAGATGGTATCTATATGGCATTCTTAGTTTGATATGCTTCGGTAAGCTTGTAGGCCCCCTAGGCAATTCAGTGCTTTACCTCCATTAGACTCACATCCACGCTAGCCCTAAAGCTATTTCGAGGAGAACCAACTATCTCCAGGTTCGATT]

[+] EMBL CD085701             [TTCTGATAATAGGTAGTACTGGAATTTCAACCAGTTGTCCATCGACTACGACTTTCGTCCTCGCCTTAGGTCCCGACTTACCCAGGGCAGATCAGCTTTACCCTGGAAACCTTGGATATTCGGCCTAGAAGATTCTCACTTCTATCTCGCTACTCATTCCGGCATTCTCACTTGTAATTACTCCACAGCTCCTTACGGTACTGCTTCTGCGTTGTTACAACGCTCCTCTACCAATTGATCTAAGATCAATTCCATAGCTTCGGTGGTATGTTTTAGCCCCGGACATTTTCGGCGCAAGATCTCTCGACTAGTGAGCTATTACGCACTCTTTGAATGTATGGCTGCTTCTAAGCCAACATCCTAGTTGTCTTCGAAATCTCACATCCTTTTCCACTTAACATACACTTTGGGACCTTAGCTGATGGTCTGGGCTCTTTCCCTTTTGACCATGGGTCTTATCACTCATAGTCTGACTGCAGATGGTATCTATATGGCATTCTTAGTTTGATATGCTTCGGTAAGCTTGTAGGCCCCCTAGGCAATTCAGTGCTTTACCTCCATTAGACTCACATCCACGCTAGCCCTAAAGCTATTTCGAGGAGAACCAACTATCTCCAGGTTCGATT]




>consensus_9221#0
TTCTGATAATAGGTAGTACTGGAATTTCAACCAGTTGTCCATCGACTACGACTTTCGTCC
TCGCCTTAGGTCCCGACTTACCCAGGGCAGATCAGCTTTACCCTGGAAACCTTGGATATT
CGGCCTAGAAGATTCTCACTTCTATCTCGCTACTCATTCCGGCATTCTCACTTGTAATTA
CTCCACAGCTCCTTACGGTACTGCTTCTGCGTTGTTACAACGCTCCTCTACCAATTGATC
TAAGATCAATTCCATAGCTTCGGTGGTATGTTTTAGCCCCGGACATTTTCGGCGCAAGAT
CTCTCGACTAGTGAGCTATTACGCACTCTTTGAATGTATGGCTGCTTCTAAGCCAACATC
CTAGTTGTCTTCGAAATCTCACATCCTTTTCCACTTAACATACACTTTGGGACCTTAGCT
GATGGTCTGGGCTCTTTCCCTTTTGACCATGGGTCTTATCACTCATAGTCTGACTGCAGA
TGGTATCTATATGGCATTCTTAGTTTGATATGCTTCGGTAAGCTTGTAGGCCCCCTAGGC
AATTCAGTGCTTTACCTCCATTAGACTCACATCCACGCTAGCCCTAAAGCTATTTCGAGG
AGAACCAACTATCTCCAGGTTCGATT

consensusID : consensus_9221#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 579
fasta sequence

                              [CGCGCCCCTTAGTATTCTCTACCTCCCCACCTGTGTCGGTTTCGAGTACGGGTAAAACTGCTTCAACACACTACACGCTTTTCTTGA-CACCAATTACAACTAAACGGAGAACGTATTCCCCTCCCAATCCAATCAGGGCATAGTTGCTTCTCAATGCGTCCCGTATAATGCTCCACAATTCTAGTTGAGGAATATTAACCTCATGTCCATCGACTACGACTTTCGTCCTCGCCTTAGGTCCCGACTTACCCAGAGTGGACGAACCTGCCTCTGGAACCCTTGNGGTTTCGGGGTATTGGATTCTCACCAATATTTGCGCTACTCAAGCCGACATTCTCACTTCTATCCAATCCACATCTGCTCGCCGCTAATGCTTCGCATCAGATAGAACGCTCCCCTACCGATTTTTCAATCCCACAGCTTCGGTACAATGTTTAGTCCCGTTCATTTTCGGCGCGCAAGCGCTTGACTAGTGAGCTATTACGCACTCATTCTAGGGTGGCTGCTTCTAGGCAAACCTCCTGGTTGTCTTTGCACTTGCACCTCCTTTCCCACTTAACACTGATTTGGGGACCTTAG]

[+] EMBL CD087356             [CGCGCCCCTTAGTATGGGCTACCTCCCCACCTGTGTCGGTTTCGAGTACGGGTAGAACTGCTTCAACACACTACACGCTTTTCTTGA CACCAATTACAACTAAACGGAGAACATATTCCCCTCCCAATCCAATCAGGGCATAGTTGCTTCTCAATGCGTCCCGTATAATGCTCCACAATTCTAGTTGAGGAATATTAACCTCATGTCCATCGACTACGACTTTCGTCCTCGCCTTAGGTCCCGACTTACCCAGAGTGGACGAACCTGCCTCTGGAACCCTTGNGGTTTCGGGGTATTGGATTCTCACCAATATTTGCGCTACTCAAGCCGACATTCTCA                                                                                                                                                                                                                                                ]
[+] EMBL CD087292             [CGCGCCCCTTAGTATTCTCTACCTACCCACCTGTGTCGGGTTCGAGTACGGGTAAAACTGCTTCAACACACTACACGCTTTTCTTGA CACCAATTACAACTAAACTGAGAACGTATTCCCCTCCCAATCCAATCACGGCATAGTTGCTTCTCAATGCGTTCCGTATAATGCTCCACAATTCTAGTTGAGGAATATTAACCTCATGT                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD087229             [CGCGCCCCTTAGTATTCTCTACCTCCCCACCTGTGTCGGTTTCGAGTACGGGTAAAACTGCTTCAACACACTACACGCTTTTCTTGA CACCAATTACAACTAAACGGAGAACGTATTCCCCTCCCAATCCAATCAGGGCATAGTTGCTTCTCAATGCGTCCCGTATAATGCTCCACAATTCTAGTTGAGGAATATTAACCTCATGTCCATCGACTACGACTTTCGTCCTCGCCTTAGGTCCCGACTTACCCATAGTGGACGA                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CD087283             [CGCGCCCCTTAGTATTCTCTACCTCCCCACCTGTGTCGGTTTCGAGTACGGGTAAAACTGCTTCAACACACTACACGCTTTTCTTGA CACCAATTACAACTAAACGGAGAACGTATTCCCCTCCCAATCCAATCAGGGCATAGTTGCTTCTCAATGCGTGCCGTATAATGCTCCACAATTCTAGTTGAGGAATATTAACCTCATGTCC                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CD087351             [                                          ccacTACGGGTAAAACTGCTTCAACACACTACACGCTTTTCTTGACCACCAATTACAACTAAACGGAGAACGTATTCCCCTCCCAATCCAATCACGGCATAATTGCTTCTCAATGCGTGCCGTATAATGCTCCACAATTCTACTTGAAGAATATTAACCTCATGTCC                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CD087344             [                                                                                                                                                                                                                                                                                   AACCCTTGGGGTTTCGGGGTATTGGATTCTCACCAATATTTGCGCTACTCAAGCCGACATTCTCACTTCTATCCAATCCACATCTGCTCGCCGCTAATGCTTCGCATCAGATAGAACGCTCCCCTACCGATTTTTCAATCCCACAGCTTCGGTACAATGTTTAGTCCCGTTCATTTTCGGCGCGCAAGCGCTTGACTAGTGAGCTATTACGCACTCATTCTAGGGTGGCTGCTTCTAGGCAAACCTCCTGGTTGTCTTTGCACTTGCACCTCCTTTCCCACTTAACACTGATTTGGGGACCTTAG]
[-] EMBL CD087339             [                                                                                                                                                                                                                                                                                                                                                                       TGCTCGCCGCTAATGCTTCGCATCAGATAGAACGCTCCCCTACCGATTTTTCAATCACACAGCTTCGGTACAATGTTTAGTCCCGTTCATTTTCGGCGCGCAAGCGCTTGGCCAGTGAGCTATTACGCACTCATTCTAGGGTGGCTGCTTCTAGGCAAACCTCCTGGTTGTCTTTGCACTTGCACCTCCTTTCCCACTTAACACTGATTTAGGGACCTTAG]
[-] EMBL CD087273             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ACTCATTTTAGGGTGGCTGCTTTTAGGCAAACCTTCTGGTTGTCTTTGCACTTGCACCTCCTTTCCCACTTAACATTGATTTGGGGACCTTAG]




>consensus_9221#1
CGCGCCCCTTAGTATTCTCTACCTCCCCACCTGTGTCGGTTTCGAGTACGGGTAAAACTG
CTTCAACACACTACACGCTTTTCTTGACACCAATTACAACTAAACGGAGAACGTATTCCC
CTCCCAATCCAATCAGGGCATAGTTGCTTCTCAATGCGTCCCGTATAATGCTCCACAATT
CTAGTTGAGGAATATTAACCTCATGTCCATCGACTACGACTTTCGTCCTCGCCTTAGGTC
CCGACTTACCCAGAGTGGACGAACCTGCCTCTGGAACCCTTGNGGTTTCGGGGTATTGGA
TTCTCACCAATATTTGCGCTACTCAAGCCGACATTCTCACTTCTATCCAATCCACATCTG
CTCGCCGCTAATGCTTCGCATCAGATAGAACGCTCCCCTACCGATTTTTCAATCCCACAG
CTTCGGTACAATGTTTAGTCCCGTTCATTTTCGGCGCGCAAGCGCTTGACTAGTGAGCTA
TTACGCACTCATTCTAGGGTGGCTGCTTCTAGGCAAACCTCCTGGTTGTCTTTGCACTTG
CACCTCCTTTCCCACTTAACACTGATTTGGGGACCTTAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9221#0      ------------------------------------------------------------
consensus_9221#1      CGCGCCCCTTAGTATTCTCTACCTCCCCACCTGTGTCGGTTTCGAGTACGGGTAAAACTG 60
                                                                                  

consensus_9221#0      ------------------------------------------------------------
consensus_9221#1      CTTCAACACACTACACGCTTTTCTTGACACCAATTACAACTAAACGGAGAACGTATTCCC 120
                                                                                  

consensus_9221#0      -------------------------------------------------TTCTGATAATA 11
consensus_9221#1      CTCCCAATCCAATCAGGGCATAGTTGCTTCTCAATGCGTCCCGTATAATGCTCCACAATT 180
                                                                            * *** 

consensus_9221#0      GGTAGTACTGGAATTTCAACCAGTTGTCCATCGACTACGACTTTCGTCCTCGCCTTAGGT 71
consensus_9221#1      C-TAGTTGAGGAATATTAACCTCATGTCCATCGACTACGACTTTCGTCCTCGCCTTAGGT 239
                        ****   ***** * ****   ************************************

consensus_9221#0      CCCGACTTACCCAGGGCAGATCAGCTTTACCCTGGAAACCTTGGATATTCGGCCTAGAAG 131
consensus_9221#1      CCCGACTTACCCAGAGTGGACGAACCTGCCTCTGGAACCCTTGNGGTTTCGGGGTATTGG 299
                      ************** *  **  * * *  * ****** *****    *****  **   *

consensus_9221#0      ATTCTCACTTCTATCT-CGCTACTCATTCCGGCATTCTCACTTGTAATTACTCCACAGCT 190
consensus_9221#1      ATTCTCACCAATATTTGCGCTACTCAAGCCGACATTCTCACTTCTATCCAATCCACATCT 359
                      ********   *** * *********  *** *********** **   * ****** **

consensus_9221#0      CCTTACGG-TACTGCTTCTGCGTTGTTACAACGCTCCTCTACCAATTGATCTAAGATCAA 249
consensus_9221#1      GCTCGCCGCTAATGCTTCGCATCAGATAGAACGCTCCCCTACCGATT-------TTTCAA 412
                       **  * * ** ******      * ** ******** ***** ***         ****

consensus_9221#0      TTCCATAGCTTCGGTGGTATGTTTTAGCCCCGGACATTTTCGGCGCAAGATCTCTCGACT 309
consensus_9221#1      TCCCACAGCTTCGGTACAATGTTT-AGTCCCGTTCATTTTCGGCGCGCAAGCGCTTGACT 471
                      * *** *********   ****** ** ****  ************   * * ** ****

consensus_9221#0      AGTGAGCTATTACGCACTCTTTGAATGTATGGCTGCTTCTAAGCCAACATCCTAGTTGTC 369
consensus_9221#1      AGTGAGCTATTACGCACTCATTCTA-GGGTGGCTGCTTCTAGGCAAACCTCCTGGTTGTC 530
                      ******************* **  * *  ************ ** *** **** ******

consensus_9221#0      TTCGAAATCTCACATCCTTTTCCACTTAACATACACTTTGGGACCTTAGCTGATGGTCTG 429
consensus_9221#1      TTTGCACTTGCACCTCCTTTCCCACTTAACACTGATTTGGGGACCTTAG----------- 579
                      ** * * *  *** ****** **********   * ** **********           

consensus_9221#0      GGCTCTTTCCCTTTTGACCATGGGTCTTATCACTCATAGTCTGACTGCAGATGGTATCTA 489
consensus_9221#1      ------------------------------------------------------------
                                                                                  

consensus_9221#0      TATGGCATTCTTAGTTTGATATGCTTCGGTAAGCTTGTAGGCCCCCTAGGCAATTCAGTG 549
consensus_9221#1      ------------------------------------------------------------
                                                                                  

consensus_9221#0      CTTTACCTCCATTAGACTCACATCCACGCTAGCCCTAAAGCTATTTCGAGGAGAACCAAC 609
consensus_9221#1      ------------------------------------------------------------
                                                                                  

consensus_9221#0      TATCTCCAGGTTCGATT 626
consensus_9221#1      -----------------