cluster # 9229

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Schistosoma mansoni
cluster # 9229 cluster # 9229 Sequences # 9 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9229#0 length = 720 sequences # 8

consensus_9229#1 length = 129 sequences # 1

consensusID : consensus_9229#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 720
fasta sequence

                              [CCGCACCTCTAATGCAGAAGCCGTTGGTAATTCTTTCGTCACTTTTGAGG-TTCCGAAACCGAAACATGTGCAAGCAATTTATCAGACGACTTCCAAACAGCTCCAGAATACTCGTTGCATACTGAAGTTTACGTACCAGCAACTTTCCCTAGTACACTGTGTCGTTATACAAATCAGACAAACACCGATAGTTATGGAGATATTGTTTCTCAGAATTTGATGTGGCTAGCTGAG-GAAGCTGTACATGCGCCTCTTGATGTTATGACGGAACTTCCTCAGGATACAAATCTCATGTCTGATGTACACCCGAATTATAAGGCAGATAGTACTTTAGAAAGTCATTTCTATGTTACCCTTCCACCTCATTCAGAAATCTCTGGAGCCTCACAACCATTTTACAGTCTCCAGGACGAAAGCATTACTTCTAATAATGGACGTTCTGAGCAGATCCACATGTGTGTTGATAGCACAGTCCAAACTTTCTCATCAGAGTTGGAAGTAACTTCAGATTTAGTTCGCGTAAGTGGTTTCACCAGTGAATCGAAAGACAACATAAT-ACCGTGGCCTAACTCTAGTGAAAGTTGTTTCTATAATTCTCACTACTTCAAAGGTGTTCCAAATTTTTCCATGAACTCATCTCTATGTATTCATACGATGGAACCACGTGAAGCCAGTGGAGAGAATTACGTTAATGGTTTTACCGTATACCAGCCCTTCAGC]

[+] EMBL CD069716             [CCGCACCTCTAATGCAGAAGCCGTTGGTAATTCTTTCGTCACTTTTGAGGTTTCCGAAACCGAAACATGTGCAAGCAATTTATCAGACGACTTCCAAACAGCTCCAGAATACTCGTTGCATACTGAAGTTTACGTACCAGCAACTTTCCCTAGTACACTGTGTCGTTATACAAATCAGACAAACACCGATAGTTATGGAGATATTGTTTCTCAGAATTTGATGTGGCTAGCTGAG GAAGCTGTACATGCGCCTCTTGATGTTATGACGGAACTTCCTCAGGATACAAATCTCATGTCTGATGTACACCCGAATTATAAGGCAGATAGTACTTTAGAAAGTCATTTCTATGTTACCCTTCCACCTCATTCAGAAATCTCTGGAGCCTCACAAGCATTTTACAGTCTCCAGGACGAAAGCATTACTTCTAATAATGGACGTTCTGAGCAGATCCACATGTGT                                                                                                                                                                                                                                                                      ]
[+] EMBL CD065795             [                                       CACTTTTGAGG TTCCGAAACCGAAACATGTGCAAGCAATTTATCAGACGACTTCCAAACAGCTCCAGAATACTCGTTGCATACTGAAGTTTACGTACCAGCAACTTTCCCTAGTACACTGTGTCGTTATACAAATCAGACAAACACCGATAGTTATGGAGATATTGTTTCTCAGAATTTGATGTGGCTAGCTGAG GAAGCTGTACATGCGCCTCTTGATGTTATGACGGAACTTCCTCAGGATACAAATCTCATGTCTGATGTACGCCCGAATTATAAGGCAGATAGTACTTTAGAAAGTCATTTCTATGTTACCCTTCCACCTCATTCAGAAATCTCTGGAGCCTCACAACCATTTTACAGTCTCCAGGACGAAAGCATTACTTCTAATAATGGACGTTCTGAGCAGATCCACATGTGTGTTGATAGCACAGTCCAAACTTTCTCATCAGAGTTGGAAGTAACTTCAGATTTAGTTCGCGTAAGTGGTTTCACCAGTGAATCGAAAGACAACATAAT ACCGTGGNCTAACTCTAGTGAAAGTT                                                                                                                                         ]
[+] EMBL CD065803             [                                       CACTTTTGAGG TTCCGAAACCGAAACATGTGCAAGCAATTTATCAGACGACTTCCAAACAGCTCCAGAATACTCGTTGCATACTGAAGTTTACGTACCAGCAACTTTCCCTAGTACACTGTGTCGTTATACAAATCAGACAAACACCGATAGTTATGGAGATATTGTTTCTCAGAACTTGATGTGGCTAGCTGAG GAAGCTGTACATGCGCCTCTTGATGTTATGACGGAACTTCCTCAGGATACAAATCTCATGTCTGATGTACGCCCGAATTATAAGGCAGATAGTACTTTAGAAAGTCATTTCTATGTTACCCTTCCACCTCATTCAGAAATCTCTGGAGCCTCACAACCATTTTACAGTCTCCAGGACGAAAGCATTACTTCTAATAATGGACGTTCTGAGCAGATCCACATGTGTGTTGATAGCACAGTCCAAACTTTCTCATCAGAGTTGGAAGTAACTTCAGATTTAGTTCGCGTAAGTGGTTTCACCAGTGAATCGAAAGACAACATAAT ACCGTGGCCTAACTCTAGTGAAA                                                                                                                                            ]
[+] EMBL CD065823             [                                          TTTTGAGGTTTCCGAAACCGAAACATGTGCAAGCAATTTATCAGACGACTTCCAAACAGCTCCAGAATACTCGTTGCATACTGAAGTTTACGTACCAGCAACTTTCCCTAGTACACTGTGTCGTTATACCAATCAGACAAACACCGATAGTTATGGAGATATTGTTTCTCAAAATTTGATGTGGCTAGCTGAGCGAAGCTGTACATGCGCCTCTTGATGTTATGACGGAACTTCCTCAGGATACAAATCTCATGTCTGATGTTCGCC                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CD167512             [                                                                                                                                                            ACTGTGTCGTTGTACAAATCAGACAGACACCGATAGTTATGGAGATATTGTTTCTCAGAATTTGATGTGGCTAGCTGAG GAAGCTGTACATGCGCCTCTTGATGTTATGACGGAACTTCCTCAGGATACAAATCTCATGTCTGATGTACACCCGAATTATAAGGCAGATAGTACTTTAGAAAGTCATTTCTATGTTACCCTTCCACCTCATTCAGAAATCTCTGGAGCCTCACAACCATTTTACAGTCTCCAGGACGAAAGCATTACTTCTAATAATGGACGTTCTGAGCAGATCCACATGTGTGTTGATAGCACAGTCCAAACTTTCTCATCAGAGTTGGAAGTAACTTCAGATTTAGTTCGCGTAAGTGGTTTCACCAGTGAATCGAAAGACAACATAAT ACCGTGGCCTAACTCTAGTGAAAGTTGTTTCTATAATTCTCACT                                                                                                                       ]
[-] EMBL CD065857             [                                                                                                                                                                              TCAGACAAACACCGATAGTTATGGAGATATTGTTTCTCAGAATTTGATGTGGCTAGCTGAG GAAGCTGTACATGCGCCTCTTGATGTTATGACGGAACTTCCTCAGGATACAAATCTCATGTCTGATGTACGCCCGAATTATAAGGCAGATAGTACTTTAGAAAGTCATTTCTATGTTACCCTTCCACCTCATTCAGAAATCTCTGGAGCCTCACAACCATTTTACAGTCTCCAGGACGAAAGCATTACTTCTAATAATGGACGTTCTGAGCAGATCCACATGTGTGTTGATAGCACAGTCCAAACTTTCTCATCAGAGTTGGAAGTAACTTCAGATTTAGTTCGCGTAAGTGGTTTCACCAGTGAATCGAAAGACAACATAATAACCGTGGCCTAACTATAGT                                                                                                                                                ]
[-] EMBL CD167506             [                                                                                                                                                                                    AAACACCGATAGTTATGGAGATATTGTTTCTCAGAATTTGATGTGGCTAGCTGAG GAAGCTGTACATGCGCCTCTTGATGTTATGACGGAACTTCCTCAGGATACAAATCTCATGTCTGATGTACACCCGAATTATAAGGCAGATAGTACTTTAGAAAGTCATTTCTATGTTACCCTTCCACCTCATTCAGAAATCTCTGGAGCCTCACAACCATTTTACAGTCTCCAGGACGAAAGCATTACTTCTAATAATGGACGTTCTGAGCAGATCCACATGTGTGTTGATAGCACAGTCCAAACTTTCTCATCAGAGTTGGAAGTAACTTCAGATTTAGTTCGCGTAAGTGGTTTCACCAGTGAATCGAAAGACAACATAAT ACCGTGGCCTAACTCTAGTGAAAGTTGTTTCTATAATTCTCACTACTTCAAAGGTGTTCCAAATTTTTCCATGAACTCATCTCTATGTATTCATACGATGGAACCACGTGAAGCCAGTGGAGAGAATTACGTTAATGGTTTTACCGTATACCAGCCCTTCAGC]
[-] EMBL CD069738             [                                                                                                                                                                                                                                                         CGCCTCTTGATGTTATGACGGAACTTCCTCAGGATACAAATCTCATGTCTGATGTACACCCGAATTATAAGGCAGATAGTACTTTAGAAAGTCATTTCTATGTTACCCTTCCACCTCATTCAGAAATCTCTGGAGCCTCACAACCA TTTACAGTCTCCAGGACGAAAGCATTACTTCTAACAATGGACGTTCTGAGCAGATCCACATGTGTGTTGATAGCACAGTCCAAACTTCCTCATCAGAGTTGGAAGTAACTTCAGATTTAGTTCGCGTAAGTGGTTTCACCAGTGAATCGAAAGACAACATAAT ACCGTGGCCTAACTCTGGTGAAAGTTGTTTCTATAATTCTCACTACTTCAAAGGTGTTCCAAATTTTTCCATGAACTCATCTCTATGTATTCATACGACGGAACCACGTGAAGCCAGTGGAGAGAATTACGTTAATGGTTTTACCGTA               ]




>consensus_9229#0
CCGCACCTCTAATGCAGAAGCCGTTGGTAATTCTTTCGTCACTTTTGAGGTTCCGAAACC
GAAACATGTGCAAGCAATTTATCAGACGACTTCCAAACAGCTCCAGAATACTCGTTGCAT
ACTGAAGTTTACGTACCAGCAACTTTCCCTAGTACACTGTGTCGTTATACAAATCAGACA
AACACCGATAGTTATGGAGATATTGTTTCTCAGAATTTGATGTGGCTAGCTGAGGAAGCT
GTACATGCGCCTCTTGATGTTATGACGGAACTTCCTCAGGATACAAATCTCATGTCTGAT
GTACACCCGAATTATAAGGCAGATAGTACTTTAGAAAGTCATTTCTATGTTACCCTTCCA
CCTCATTCAGAAATCTCTGGAGCCTCACAACCATTTTACAGTCTCCAGGACGAAAGCATT
ACTTCTAATAATGGACGTTCTGAGCAGATCCACATGTGTGTTGATAGCACAGTCCAAACT
TTCTCATCAGAGTTGGAAGTAACTTCAGATTTAGTTCGCGTAAGTGGTTTCACCAGTGAA
TCGAAAGACAACATAATACCGTGGCCTAACTCTAGTGAAAGTTGTTTCTATAATTCTCAC
TACTTCAAAGGTGTTCCAAATTTTTCCATGAACTCATCTCTATGTATTCATACGATGGAA
CCACGTGAAGCCAGTGGAGAGAATTACGTTAATGGTTTTACCGTATACCAGCCCTTCAGC

consensusID : consensus_9229#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 129
fasta sequence

                              [AAACCATTAACGTAATTCTCTCCACTGGCTTCACGTGGTTCCATCGTATGAATACATAGAGATGAGTTCATGGAAAAATTTGGAACACTTTGACACCTCAGTGTTCTGTGTCATAACCTCAACTCAGCT]

[+] EMBL CD097452             [AAACCATTAACGTAATTCTCTCCACTGGCTTCACGTGGTTCCATCGTATGAATACATAGAGATGAGTTCATGGAAAAATTTGGAACACTTTGACACCTCAGTGTTCTGTGTCATAACCTCAACTCAGCT]




>consensus_9229#1
AAACCATTAACGTAATTCTCTCCACTGGCTTCACGTGGTTCCATCGTATGAATACATAGA
GATGAGTTCATGGAAAAATTTGGAACACTTTGACACCTCAGTGTTCTGTGTCATAACCTC
AACTCAGCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9229#0      CCGCACCTCTAATGCAGAAGCCGTTGGTAATTCTTTCGTCACTTTTGAGGTTCCGAAACC 60
consensus_9229#1      ------------------------------------------------------------
                                                                                  

consensus_9229#0      GAAACATGTGCAAGCAATTTATCAGACGACTTCCAAACAGCTCCAGAATACTCGTTGCAT 120
consensus_9229#1      ------------------------------------------------------------
                                                                                  

consensus_9229#0      ACTGAAGTTTACGTACCAGCAACTTTCCCTAGTACACTGTGTCGTTATACAAATCAGACA 180
consensus_9229#1      ------------------------------------------------------------
                                                                                  

consensus_9229#0      AACACCGATAGTTATGGAGATATTGTTTCTCAGAATTTGATGTGGCTAGCTGAGGAAGCT 240
consensus_9229#1      ------------------------------------------------------------
                                                                                  

consensus_9229#0      GTACATGCGCCTCTTGATGTTATGACGGAACTTCCTCAGGATACAAATCTCATGTCTGAT 300
consensus_9229#1      ------------------------------------------------------------
                                                                                  

consensus_9229#0      GTACACCCGAATTATAAGGCAGATAGTACTTTAGAAAGTCATTTCTATGTTACCCTTCCA 360
consensus_9229#1      ------------------------------------------------------------
                                                                                  

consensus_9229#0      CCTCATTCAGAAATCTCTGGAGCCTCACAACCATTTTACAGTCTCCAGGACGAAAGCATT 420
consensus_9229#1      ------------------------------------------------------------
                                                                                  

consensus_9229#0      ACTTCTAATAATGGACGTTCTGAGCAGATCCACATGTGTGTTGATAGCACAGTCCAAACT 480
consensus_9229#1      ------------------------------------------------------------
                                                                                  

consensus_9229#0      TTCTCATCAGAGTTGGAAGTAACTTCAGATTTAGTTCGCGTAAGTGGTTTCACCAGTGAA 540
consensus_9229#1      -------------------AAACCATTAACGTAATTCTCTCCACTGGCTTCAC--GTGGT 39
                                          ***     *  ** *** *   * *** *****  ***  

consensus_9229#0      TCGAAAGACAACATAATACCGTGGCCTAACTCTAGTGAAAGTTGTTTCTATAATTCTCAC 600
consensus_9229#1      TCCATCGTATG---AATACATAGAGATGAGTTCATGGAAAA--ATTTGGAACACTTTGAC 94
                      ** *  *       *****   *   * * *  *  ****    ***  *  * * * **

consensus_9229#0      TACTTCAAAGGTGTTCCAAATTTTTCCATGAACTCATCTCTATGTATTCATACGATGGAA 660
consensus_9229#1      -ACCTCA---GTGTTCTGTGTCATAACCTCAACTCAGCT--------------------- 129
                       ** ***   ******    *  *  * * ****** **                     

consensus_9229#0      CCACGTGAAGCCAGTGGAGAGAATTACGTTAATGGTTTTACCGTATACCAGCCCTTCAGC 720
consensus_9229#1      ------------------------------------------------------------