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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9245#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1206 fasta sequence
[TGGTACAGCAACATTGATCTAGCCGGGAAAGCCTCAGCATGTGAAGGTTGTCCTAATCGATCTTTGTGTTCAAGTGGACAAGCCAGACTTCCTCTTTCTCAACGTGAACCAGACACGATTCTCTCCATAAAACGACGTCTTGGTTCAATTCGCCACAGAATAATTATTCTCTCTGGCAAGGGTGGAGTTGGGAAAAGTAGTCTTTCTGTTTGTCTAGCTAGAGGACTAAGCAGGTGTGAACACAGCCAAGTAAATAGTTACAATGAACCTTATCGTGTTGGACTACTTGATCTTGATCTGTGCGGCCCTTCCATTCCATGTATGTTCGGTTGCATGGATGAAAAGGTACACCAAAGCCAATCTGGTTGGTCTCCTGTCTTTGTGACGGAAAATCTTTGTTTGATGTCTATCGGGTTTCTGCTACCCGGTCCGGACCACCCAGTCATATGGCGTGGCCCTCGCAAAAACACGTTGATTCGCCAGCTCCTCACTGACGTTGCATGGTCTGAAGAAGATAGTAATCTAGACCAAGGGACCAATTTGGACTTTTTAATCATAGACACTCCTCCAGGGACATCTGATGAACATCTCTCAGTTGTTCAGTATCTTCA-GGCTGCTGAGTGTTTAGACGGNGCAATAATAATCACCACACCTCAGGAAGTATCTCTGTGTGATGTAAGAAAGGTCATTAACCTAACATTCAACGACGAAATTCATAGGCAAGAGAATGGCATAGCAATTAGATCCCTTCTTGGTCCATTACTAGCAGATTGCTTCATAGCCAGTCTAGAAAACAACCAACTTAAAATACTTATAGACAACTTCCACTTGTGTAAAAGATATCTGCTTCCCCTTCCATCTTTTCCATAGACTTTCTACTCCCAACTGGTTTGTTTCTATCTCTATAATCATCCTAATTACATTTTAATTTCAACATTTTATCTTATCATGCTGAACCATCCGTTCTCAATTATAAATTCCCTATTTATCTTCATGATGAATACTTAAATCCTTAACAATAAAACTACTATTAGCTTCGCTGACTAAAAAAATTCTTTAGTAGCTATGTTTATTCTTACTCACTGTTATCATGTTTAACAAAATCTTACTAACATTATTATTGTAATTGCTATCATCCTGAAAAGTAAGTATACATATTTGCGACTGTACAGCTTTGAAAATGAATTCACCAAAAATAAAACTCTT]
[+] EMBL CD069991 [TGGTACAGCAACATTGATCTAGCCGGGAAAGCCTCAGCATGTGAAGGTTGTCCTAATCGATCTTTGTGTTCAAGTGGACAAGCCAGACTTCCTCTTTCTCAACGTGAACCAGACACGATTCTCTCCATAAAACGACGTCTTGGTTCAATTCGCCACAGAATAATTATTCTCTCTGGCAAGGGTGGAGTTGGGAAAAGTAGTCTTTCTGTTTGTCTAGCTAGAGGACTAAGCAGGTGTGAACACAGCCAAGTAAATAGTTACAATGAACCTTATCGTGTTGGACCACTTGATCTTGATCTGTGCGGCCCTTCCATTCCATGTATGTTCGGTTGCATGGATGAAAAGGTACACCAAAGCCTATCTGGTTGGTCTCCTGTCTTTGTGACGGAAAATCTTTGTTTGATGTCTATCGGGTTTCTGCTACCCGGTCCGGACCACCCAGTCATATGGCGTGGCCCTCGCAAAAACACGTTGATTCGCCAGCTCCTCACTGACGTTGCATGGTCTGAAGAAGATAGTAATCTAGACCA ]
[+] EMBL CD070028 [TGGTACA CAACAGTGATCTAGCCGGGAAAGCCTCAGCATGTGAAGGTTGTCCTAATCGATCTTTGTGTTCAAGTGGACAAGCCAGACTTCCTCTTTCTCAACGTGAACCAGACACGATTCTCTCCATAAAACGACGTCTTGGTTCAATTCGCCACAGAATAATTATTCTCTCTGGCAAGGGTGGAGTTGGGAAAAGTAGTCTTTCTGTTTGTCTAGCTAGAGGACTAAGCAGGTGTGAACACAGCCAAGTAAATAGTTACAATGAACCTTATCGTGTTGGACCACTTGATCTTGATCTGTGCGGCCCTTCCATTCCATGTATGTTCGGTTGCATGGATGAAAAGGTACACCAAAGCCTATCTGGTTGGTCTCCTGTCTTTGTGACGGAAAATCTTTGTTTGATGTCTATCGGGTTTCTGCTACCCGGTCCGGACCACCCAGTCATATGGCGTGGCCCTCGCAAAAACACGTTGATTCGCCAGCTCCTCACTGACGTTGCATGGTCTGAAGAAGATAGTA ]
[+] EMBL CD081124 [ gaggCGCTCTTTGTGTTCAAGTGGACAAGCCAGACTTCCTCTTTCT AACGTGAACCAGACACGATTCTCTCCATAAAACGACGTCTTGGTTCAATTCGCCACAGAATAATTATTCTCTCTGGCAAGGGTGGAGTTGGGAAAAGTAGTCTTTCTGTTTGTCTAGCTAGAGGACTAAGCAGGTGTGAACACAGCCAAGTAAATAGTTACAATGAACCTTATCGTGTTGGACTACTTGATCTTGATCTGTGCGGCCCTTCCATTCCATGTATGTTCGGTTGCATGGATGAAAAGGTACACCAAAGCCAATCTGGTTGGTCTCCTGTCTTTGTGACGGAAAATCTTTGTTTGATGTCTATCGGGTTTCTGCTACCCGGTCCGGACCACCCAGTCATATGGCGTGGCCCTCGCAAAAACACGTTGATTCGCCAGCTCCTCACTGACGTTGCATGGTCTGAAGAAGATAGTAATCTAGACCAAGGGACCAATTTGGACTTTTTAATCATAGACACTCCTCCAGGGACATCTGATGAACATCTCTCAGTTGTTCAGTATCTTCA GGCTGCTGAGTGTTTAGACGGNGCAATAATAATCACCACACCTCAGGAAGTATCTCTGTGTGATGTAAGAAAGGTCATTAACCTAACATTCAACGACGAAATTCATAGGCAAGAGAATGGCATA ]
[-] EMBL CD069999 [ AAGT GACAAGCCAGACTTCCTCTTTCTCAACGTGAACCAGACACGATTCTCTCCATAAAACGACGTCTTGGTTCAATTCGCCACAGAATAATTATTCTCTCTGGCAAGGGTGGAGTTGGGAAAAGTAGTCTTTCTGTTTGTCTAGCTAGAGGACTAAGCAGGTGTG ACACAGCCAAGTAAATAGTTACAATGAACCTTATCGTGTTGGACTACTTGATCTTGATCTGTGCGGCCCTTCCATTCCATGTATGTTCGGTTGCATGGATGAAAAGGTACACCAAAGCCAATCTGGTTGGTCTCCTGTCTTTGTGACGGAAAATCTTTGTTTGATGTCTATCGGGTTTCTGCTACCCGGTCCGGACCACCCAGTCATATGGCGTGGCCCTCGCAAAAACACGTTGATTCGCCAGCTCCTCACTGACGTTGCATGGTCTGAAGAAGATAGTAATCTAGACCAAGGGACCAATTTGGACTTTTTAATCATAGACACTCCTCCAGGGACATCTGATGAACATCTCTCAGTTGTTCAGTATCTTCACGGCTGCT ]
[-] EMBL CD070037 [ TCAACGTGAACCAGACACGATTCTCTCCATAAAACGACGTCTTGGTTCAATTCGCCACAGAATAATTATTCTCTCTGGCAAGGGTGGAGTTGGGAAAAGTAGTCTTTCTGTTTGTCTAGCTAGAGGACAAAGCAGGTGTGAACACAGCCAAGTAAATAGTTACAATGAACCTTATCGTGTTGGACTACTTGATCTTGATCTGTGCGGCCCTTCCATTCCATGTATGTTCGGTTGCATGGATGAAAAGGTACACCAAAGCCAATCTGGTTGGTCTCCTGTCTTTGTGACGGAAAATCTTTGTTTGATGTCTATCGGGTTTCTGCTACCCGGTCCGGACCACCCAGTCATATGGCGTGGCCCTCGCAAAAACACGTTGATTCGCCAGCTCCTCACTGACGTTGCATGGTCTGAAGAAGATAGTAATCTAGACCAAGGGACCAATTTGGACTTTTTAATCATAGACACTCCTCCAGGGACATCTGATGAACATCTCTCAGTTGTTCAGTATCTTCA GGCTGCT ]
[-] EMBL CD074946 [ ACCACACCTCAGGAAGTATCTCTGTGTGATGTAAGAAAGGTCATTAACCTAACATTCAACGACGAAATTCATAGGCAAGAGAATGGCATAGCAATTAGATCCCTTCTTGGTCCATTACTAGCAGATTGCTTCATAGCCAGTCTAGAAAACAACCAACTTAAAATACTTATAGACAACTTCCACTTGTGTAAAAGATATCTGCTTCCCCTTCCATCTTTTCCATAGACTTTCTACTCCCAACTGGTTTGTTTCTATCTCTATAATCATCCTAATTACATTTTAATTTCAACATTTTATCTTATCATGCTGAACCATCCGTTCTCAATTATAAATTCCCTATTTATCTTCATGATGAATACTTAAATCCTTAACAATAAAACTACTATTAGCTTCGCTGACTAAAAAAATTCTTTAGTAGCTATGTTTATTCTTACTCACTGTTATCATGTTTAACAAAATCTTACTAACATTATTATTGTAATTGCTATCATCCTGAAAAGTAAGTATACATATTTGCGACTGTACAGCTTTGAAAATGAATTCACCAAAAATAAAACTCTT]
consensusID : consensus_9245#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 700 fasta sequence
[GAGTGGGAAAAGTAGTCTTTCTGTTTGTCTAGCTAGAGGACTAAGCAGGTGTGAACACAGCCAAGTAAATAGTTACAATGAACCTTATCGTGTTGGACTACTTGATCTTGATCTGTGCGGCCCTTCCATTCCATGTATGTTCGGTTGCATGGATGAAAAGGTACACCAAAGCCAATCTGGTTGGTCTCCTGTCTTTGTGACGGAAAATCTTTGTTTGATGTCTATCGGGTTTCTGCTACCCGGTCCGGACCACCCAGTCATATGGCGTGGCCCTCGCAAAAACACGTTGATTCGCCAGCTCCTCACTGACGTTGCATGGTCTGAAGAAGATAGTAATCTAGACCAAGGGACCAATTTGGACTTTTTAATCATAGACACTCCTCCAGGGACATCTGATGAACATCTCTCAGTTGTTCAGTATCTTCAGGCTGCTGAGTGTTTAGACGGGGCAATAATAATCACCACACCTCAGGAAGTATCTCTGTGTGATGTAAGAAAGGAAATAGATTTTTGTCGGAAACTATCAATCCCAATCTTAGGGGTCGTGGAGAATATGGTTGAATTTGTGTGTCCAACTTGCAAACACACATGTCCATTATTTCCATCATTCACAGGCGGTGCCAGCTCTCTATCCACTACCAAACACAATGAAAATGCTGATGATTCATCATTTTCAGATCTTGAAATAATTGGTCGGTTA]
[-] EMBL CD124842 [GAGTGGGAAAAGTAGTCTTTCTGTTTGTCTAGCTAGAGGACTAAGCAGGTGTGAACACAGCCAAGTAAATAGTTACAATGAACCTTATCGTGTTGGACTACTTGATCTTGATCTGTGCGGCCCTTCCATTCCATGTATGTTCGGTTGCATGGATGAAAAGGTACACCAAAGCCAATCTGGTTGGTCTCCTGTCTTTGTGACGGAAAATCTTTGTTTGATGTCTATCGGGTTTCTGCTACCCGGTCCGGACCACCCAGTCATATGGCGTGGCCCTCGCAAAAACACGTTGATTCGCCAGCTCCTCACTGACGTTGCATGGTCTGAAGAAGATAGTAATCTAGACCAAGGGACCAATTTGGACTTTTTAATCATAGACACTCCTCCAGGGACATCTGATGAACATCTCTCAGTTGTTCAGTATCTTCAGGCTGCTGAGTGTTTAGACGGGGCAATAATAATCACCACACCTCAGGAAGTATCTCTGTGTGATGTAAGAAAGGAAATAGATTTTTGTCGGAAACTATCAATCCCAATCTTAGGGGTCGTGGAGAATATGGTTGAATTTGTGTGTCCAACTTGCAAACACACATGTCCATTATTTCCATCATTCACAGGCGGTGC ]
[-] EMBL CD186657 [ CGGTCCGGACCACCCAGTCATATGGCGTGGCCCTCGCAAAAACACGTTGATTCGCCAGCTCCTCACTGACGTTGCATGGTCTGAAGAAGATAGTAATCTAGACCAAGGGACCAATTTGGACTTTTTAATCATAGACACTCCTCCAGGGACATCTGATGAACATCTCTCAGTTGTTCAGTATCTTCAGGCTGCTGAGTGTTTAGACGGGGCAATAATAATCACCACACCTCAGGAAGTATCTCTGTGTGATGTAAGAAAGGAAATAGATTTTTGTCGGAAACTATCAATCCCAATCTTAGGGGTCGTGGAGAATATGGTTGAATTTGTGTGTCCAACTTGCAAACACACATGTCCATTATTTC ]
[-] EMBL CD186163 [ GAACATCTCTCAGTTGTTCAGTATCTTCAGGCTGCTGAGTGTTTAGACGGGGCAATAATAATCACCACACCTCAGGAAGTATCTCTGTGTGATGTAAGAAAGGAAATAGATTTTTGTCGGAAACTATCAATCCCAATCTTAGGGGTCGTGGAGAATATGGTTGAATTTGTGTGTCCAACTTGCAAACACACATGTCCATTATTTCCATCATTCACAGGCGGTGCCAGCTCTCTATCCACTACCAAACACAATGAAAATGCTGATGATTCATCATTTTCAGATCTTGAAATAATTGGTCGGTTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9245#0 TGGTACAGCAACATTGATCTAGCCGGGAAAGCCTCAGCATGTGAAGGTTGTCCTAATCGA 60
consensus_9245#1 ------------------------------------------------------------
consensus_9245#0 TCTTTGTGTTCAAGTGGACAAGCCAGACTTCCTCTTTCTCAACGTGAACCAGACACGATT 120
consensus_9245#1 ------------------------------------------------------------
consensus_9245#0 CTCTCCATAAAACGACGTCTTGGTTCAATTCGCCACAGAATAATTATTCTCTCTGGCAAG 180
consensus_9245#1 ------------------------------------------------------------
consensus_9245#0 GGTGGAGTTGGGAAAAGTAGTCTTTCTGTTTGTCTAGCTAGAGGACTAAGCAGGTGTGAA 240
consensus_9245#1 ----GAGT-GGGAAAAGTAGTCTTTCTGTTTGTCTAGCTAGAGGACTAAGCAGGTGTGAA 55
**** ***************************************************
consensus_9245#0 CACAGCCAAGTAAATAGTTACAATGAACCTTATCGTGTTGGACTACTTGATCTTGATCTG 300
consensus_9245#1 CACAGCCAAGTAAATAGTTACAATGAACCTTATCGTGTTGGACTACTTGATCTTGATCTG 115
************************************************************
consensus_9245#0 TGCGGCCCTTCCATTCCATGTATGTTCGGTTGCATGGATGAAAAGGTACACCAAAGCCAA 360
consensus_9245#1 TGCGGCCCTTCCATTCCATGTATGTTCGGTTGCATGGATGAAAAGGTACACCAAAGCCAA 175
************************************************************
consensus_9245#0 TCTGGTTGGTCTCCTGTCTTTGTGACGGAAAATCTTTGTTTGATGTCTATCGGGTTTCTG 420
consensus_9245#1 TCTGGTTGGTCTCCTGTCTTTGTGACGGAAAATCTTTGTTTGATGTCTATCGGGTTTCTG 235
************************************************************
consensus_9245#0 CTACCCGGTCCGGACCACCCAGTCATATGGCGTGGCCCTCGCAAAAACACGTTGATTCGC 480
consensus_9245#1 CTACCCGGTCCGGACCACCCAGTCATATGGCGTGGCCCTCGCAAAAACACGTTGATTCGC 295
************************************************************
consensus_9245#0 CAGCTCCTCACTGACGTTGCATGGTCTGAAGAAGATAGTAATCTAGACCAAGGGACCAAT 540
consensus_9245#1 CAGCTCCTCACTGACGTTGCATGGTCTGAAGAAGATAGTAATCTAGACCAAGGGACCAAT 355
************************************************************
consensus_9245#0 TTGGACTTTTTAATCATAGACACTCCTCCAGGGACATCTGATGAACATCTCTCAGTTGTT 600
consensus_9245#1 TTGGACTTTTTAATCATAGACACTCCTCCAGGGACATCTGATGAACATCTCTCAGTTGTT 415
************************************************************
consensus_9245#0 CAGTATCTTCAGGCTGCTGAGTGTTTAGACGGNGCAATAATAATCACCACACCTCAGGAA 660
consensus_9245#1 CAGTATCTTCAGGCTGCTGAGTGTTTAGACGGGGCAATAATAATCACCACACCTCAGGAA 475
******************************** ***************************
consensus_9245#0 GTATCTCTGTGTGATGTAAGAAAGGTCATTAACCTAACATTCAACGACGAAATTCATAGG 720
consensus_9245#1 GTATCTCTGTGTGATGTAAGAAAGGAAATAGATTTT-TGTCGGAAACTATCAATCCCAAT 534
************************* ** * * * * * ** *
consensus_9245#0 CAAGAGAATGGCATAGCAATTAGATCCCTTCTTG-GTCCA--TTACTAGCAGATTGCTTC 777
consensus_9245#1 CTTAGGGGTCGTGGAGAATATGGTTGAATTTGTGTGTCCAACTTGCAAACACACATGTCC 594
* * * * ** * * * * ** ** ***** ** * * ** * * *
consensus_9245#0 ATAGCCAGTCTAGAAAACAACCAACTTAAAATACTTATAGACAACTTCCACTTGTGTAAA 837
consensus_9245#1 ATTATTTCCATCATTCACAGGCGGTGCCAGCTCTCTAT---CCACTACCAAACACAATGA 651
** * *** * * * *** * *** *** *
consensus_9245#0 AGATATCTGCTTCCCCTTCCATCTTTTCCATAGACTTTCTACTCCCAACTGGTTTGTTTC 897
consensus_9245#1 AAATG-CTGATGA----TTCATCATTTTC--AGATCTTGAAAT---AATTGGTCGGTTA- 700
* ** *** * * **** *** * *** ** * * ** **** ***
consensus_9245#0 TATCTCTATAATCATCCTAATTACATTTTAATTTCAACATTTTATCTTATCATGCTGAAC 957
consensus_9245#1 ------------------------------------------------------------
consensus_9245#0 CATCCGTTCTCAATTATAAATTCCCTATTTATCTTCATGATGAATACTTAAATCCTTAAC 1017
consensus_9245#1 ------------------------------------------------------------
consensus_9245#0 AATAAAACTACTATTAGCTTCGCTGACTAAAAAAATTCTTTAGTAGCTATGTTTATTCTT 1077
consensus_9245#1 ------------------------------------------------------------
consensus_9245#0 ACTCACTGTTATCATGTTTAACAAAATCTTACTAACATTATTATTGTAATTGCTATCATC 1137
consensus_9245#1 ------------------------------------------------------------
consensus_9245#0 CTGAAAAGTAAGTATACATATTTGCGACTGTACAGCTTTGAAAATGAATTCACCAAAAAT 1197
consensus_9245#1 ------------------------------------------------------------
consensus_9245#0 AAAACTCTT 1206
consensus_9245#1 ---------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||