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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9248#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1794 fasta sequence
[TTCACAAACAACTGACACGTTAAGGTTGGACACACTTTCCACTGAACAATCGGATGCAATACATAGTGGATTTGATTTATCTGCAGACAATTCAGATCAAGATTTGGATTCGGTAGCTGCACAGCTTGTGTCTGATGTGTTGGAAAATGCCAAAAACTATTTCTCAAATCATATCACAAAATCTAATGATGCAGAACAAAAAACAGTGAATGTTATTCGCGATAGCGGATGTGCACCATCTGCCACAGATGAAGATGAAGATTATTATTATGAAGAAGAAATTGATGATGATGTTGATGATGATCACGTGAATAACGATGAAACAGTCGAAGAAATATCAGAAAATCATATTGATATCTTAACATCATCTGGAACTATTTCCACTTCAGACACTTCAACTCCTAAATTTGTAGGTGTTGCTTCTATTTTCGATGATGCTTCATTGGATCAAAGCAATCAGTTGGATAAGACATCGTCTATACACGATGATTTACTCATTGATAATGATGTTATTGATGTTGTAGCACCGTGTCCTGCTATTTTTATGTCTGGAATTACCACTTCTATTGATCCTCCTACTATTATTACAACAACAACAAATATTATTACTAACAATAATACTACAATAACAACAAATATCGGTCGTAATGACTCTCAGAAGTCAACCACTTCAAGTGGATATGTCGACTCTAGTGATGATTAAGATTAGTAGGTAATATTCTTCGAATGCTTTCTCAAACACGAACTTTTTCAAAAAAAAAAAGAAATTAATATCTAGTTTATCAATAATGAGTTGATTACCTTTCAGACATCTGATTAACCTCGTCATAAAAAAAATCATTTTTGTTGTATGATAATGATAATCAGAATAGGAAGACGGATATGTTTTCTATCTAGATTATATTTTTGTGTGTATGTATGTATGTGTGCTGTATGACTTTTTTTGAATAACATGCATTTCATTTGTGACGCCGTTTATTTTCAAAACTTATTATGTCTTTAACCCATCCTCTCTCTATATATACATATATCACCTACAATTGTTTGAAATAGACATTGTTCCTGGCGTTTTTTTCACCATGTTTTACACGTACATACACAAACGCTTTCGCATCAGGTATGCTCGNGTATCTTTTTTG-TTGGATATGTATGCGTGTACTTATTTTATCATATTTAATTTAGTTTATTACTCCTTTTCAAAGAACATTCTACTTTTTTTTGTTTCAATTATTTAAACATTATGTGCCTTCCATTTTTTGAATAGTTCGATTTCTTCCAAATATTTGTATTTAGAACAAGATAGACATGATTGTATTATACCCGCGAAAAAAAAAGGTTTTTGTATGTGTACGTGATAATTAGCAACTTGTTTCTGTTTTGCAAAAATTCATACATACACCTAAAAAGAAACATTCATTGTTTATACTGTTTACGTATTTTCTTTTTGTTTGAATAAAATATGTATCAATGTACACACGTGGATCGTGTGCTTTTTATAAATTTGTGTGTAAATACACTAATCCTGTTTTCAATAGTGACACTATACTACTAATAATAGTACTACTACTACTACTACCACTACTATACTCATTAATACAGAACATCTTCATTTTATTCTAAACTTATTTTCATTACAAGTATTTAACTCTCATCATTTGACATTGTTAGTTATAATTTTATTTCCTATTAAAGAATAAATTACACTCACATATTTACCTAATTACACANATTTATTGAATAAATAAATAAATAACCAGTGGTAAAAGAAGAGACACATCAATATACTGTTTCCTT]
[+] EMBL CD063380 [TTCACAAACAACTGACACGTTAAGGTTGGACACACTTTCCACTGAACAATCGGATGCAATACATAGTGGATTTGATTTATCTGCAGACAATTCAGATCAAGATTTGGATTCGGTAGCTGCACAGCTTGTGTCTGATGTGTTGGAAAATGCCAAAAACTATTTCTCAAATCATATCACAAAATCTAATGATGCAGAACAAAAAACAGTGAATGTTATTCGCGATAGCGGATGTGCACCATCTGCCACAGATGAAGATGAAGATTATTATTATGAAGAAGAAATTGATGATGATGTTGATGATGATCACGTGAATAAC ]
[+] EMBL CD155677 [ GGATTTGATTTATCTGCAGACAATTCAGATCAAGATTTGGATTCGGTAGCTGCACAGCTTGTGTCTGATGTGTTGGAAAATGCCAAAAACTATTTCTCAAATCATATCACAAAATCTAATGATGCAGAACAAAAAACAGTGAATGTTATTCGCGATAGCGGATGTGCACCATCTGCCACAGATGAAGATGAAGATTATTATTATGAAGAAGAAATTGATGATGATGTTGATGATGATCACGTGAATAACGATGAAACAGTCGAAGAAATATCAGAAAATCATATTGATATCTTAACATCATCTGGAACTATTTCCACTTCAGACACTTCAACTCCTAAATTTGTAGGTGTTGCTTCTATTTTCGATGATGCTTCATTGGATCAAAGCAATCAGTTGGATAAGACATCGTCTATACACGATGATTTACTCATTGATAATGATGTTATTGATGTTGTAGCACCGTGTCCTGCTATTTTTATGTCTGGAATTACCACT ]
[+] EMBL CD117422 [ TCAGTTGGATAAGACATCGTCTATACACGATGATTTACTCATTGATAATGATGTTATTGATGTTGTAGCACCGTGTCCTGCTATTTTTATGTCTGGAATTACCACTTCTATTGATCCTCCTACTATTATTACAACAACAACAAATATTATTACTAACAATAATACTACAATAACAACAAATATCGGTCGTAATGACTCTCAGAAGTCAACCACTTCAAGTGGATATGTCGACTCTAGTGATGATTAAGATTAGTAGGTAATATTCTTCGAATGCTTTCTCAAACACGAACTTTTTCAAAAAAAAAAAGAAATTAATATCTAGTTTATCAATAATGAGTTGATTACCTTTCAGACATCTGATTAACCTCGTCATAAAAAAAATCATTTTTGTTGTATGATAATGATAATCAGAATAGGAAGACGGATATGTTTTCTATCTAGATTATATTTTTGTGTGTATGTATGTATGTGTGCTGTATGACTTTTTTTGAATAACATGCATTTCATTTGTGACGCCGCTTATTTTCAAAACTTAT ]
[+] EMBL CD078818 [ AGTTTATCAATAATGAGTTGATTACCTTTCAGACATCTGATTAACCTCGTCATAAAAAAAATCATTTTTGTTGTATGATAATGATAATCAGAATAGGAAGACGGATATGTTTTCTATCTAGATTATATTTTTGTGTGTATGTATGTATGTGTGCTGTATGACTTTTTTTGAATAACATGCATTTCATTTGTGACGCCGTTTATTTTCAAAACTTATTATGTCTTTAACCCATCCTCTCTCTATATATACATATATCACCTACAATTGTTTGAAATAGACATTGTTCCTGGCGTTTTTTTCACCATGTTTTACACGTACATACACAAACGCTTTCGCATCAGGTATGCTCGNGTATCTTTTTTG TTGGATAT ]
[-] EMBL CD073278 [ GTTTATCAATAATGAGTTGATTACCTTTCAGACATCTGATTAACCTCGTCATAAAAAAAATCATTTTTGTTGTATGATAATGATAATCAGAATAGGAAGACGGATATGTTTTCTATCTAGATTATATTTTTGTGTGTATGTATGTATGTGTGCTGTATGACTTTTTTTGAATAACATGCATTTCATTTGTGACGCCGTTTATTTTCAAAACTTATTATGTCTTTAACCCATCCTCTCTCTATATATACATATATCACCTACAATTGTTTGAAATAGACATTGTTCCTGGCGTTTTTTTCACCATGTTTTACACGTACATACACAAACGCTTTCGCATCAGGTATGCTCGTGTATCTTTTTTGTTTGTATATGTATGCGTGTACTTATTTTATCATATTTAATTTAGTTTATTACTCCTTTTCAAAGAACATTCTACTTTTTTTTGTTTCAATTATTTAAACATTATGTGCCTTCCATTTTTTGAATAGTTCGATTTCTTCCAAATATTTGTATTTAGAACAAGATAGACATGATTGTATT ]
[+] EMBL CD133796 [ AAACATTATGTGCCTTCCATTTTTTGAATAGTTCGATTTCTTCCAAATATTTGTATTTAGAACAAGATAGACATGATTGTATTATACCCGCGAAAAAAAAAGGTTTTTGTATGTGTACGTGATAATTAGCAACTTGTTTCTGTTTTGCAAAAATTCATACATACACCTAAAAAGAAACATTCATTGTTTATACTGTTTACGTATTTTCTTTTTGTTTGAATAAAATATGTATCAATGTACACACGTGGATCGTGTGCTTTTTATAAATTTGTGTGTAAATACACTAATCCTGTTTTCAATAGTGACACTATACTACTAATAATAGTACTACTACTACTACTACCACTACTATACTCATTAATACAGAACATCTTCATTTTATTCTAAACTTATTTTCATTACAAGTATTTAACTCTCATCATTTGACATTGTTAGTTATAATTTTATTTCCTATTAAAGAATAAATTACACTCACATATTTACCTAATTACACANATTTATTGAATAAATAAATAAATAACCAGTGGTAAAAGAAGAGACACATCAATATACTGTTTCCTT]
consensusID : consensus_9248#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 382 fasta sequence
[CGGCACGAGGACTATTTCCACTTCAGACACTTCAACTCCTAAATTTGTAGGTGTTGCTTCTATTTTCGATGATGCTTCATTGGATCAAAGCAATCAGTTGGATAAGACATCGTCTATACACGATGATTTACTCATTGATAATGATGTTATTGATGTTGTAGCACCGTGTCCTGCTATTTTTATGTCTGGAATTACCACTTCTATTGATCCTCCTACTATTATTACAACAACAACAACAAATATTATTACTAACAATAATACTACAATAACAACAAATATCGGTCGTAATGACTCTCAGAAGTCAACCACTTCAAGTGGATATGTCGACTCTAGTGATGATTAAGATTAGTAGGTAATATTCTTCGAATGC-TTCTCAAACACG]
[+] EMBL CD079344 [CGGCACGAGGACTATTTCCACTTCAGACACTTCAACTCCTAAATTTGTAGGTGTTGCTTCTATTTTCGATGATGCTTCATTGGATCAAAGCAATCAGTTGGATAAGACATCGTCTATACACGATGATTTACTCATTGATAATGATGTTATTGATGTTGTAGCACCGTGTCCTGCTATTTTTATGTCTGGAATTACCACTTCTATTGATCCTCCTACTATTATTACAACAACAACAACAAATATTATTACTAACAATAATACTACAATAACAACAAATATCGGTCGTAATGACTCTCAGAAGTCAACCACTTCAAGTGGATATGTCGACTCTAGTGATGATTAAGATTAGTAGGTAATATTCTTCGAATGC TTCTCAAACAC ]
[-] EMBL CD073621 [ GGCACGAGGACTATTTCCACTTCAGACACTTCAACTCCTAAATTTGTAGGTGTTGCTTCTATTTTCGATGATGCTTCATTGGATCAAAGCAATCAGTTGGATAAGACATCGTCTATACACGATGATTTACTCATTGATAATGATGTTATTGATGTTGTAGCACCGTGTCCTGCTATTTTTATGTCTGGAATTACCACTTCTATTGATCCTCCTACTATTATTACAACAACAACAACAAATATTATTACTAACAATAATACTACAATAACAACAAATATCGGTCGTAATGACTCTCAGAAGTCAACCACTTCAAGTGGATATGTCGACTCTAGTGATGATTAAGATTAGTAGGTAATATTCTTCGAATGC TTCTCAAACACG]
[+] EMBL CD078817 [ TTTTTATGTCTGGAATTACCACTTCTATTGATCCTCCTACTATTATTACAACAACAACAACAAATATTATTACTAACAATAATACTACAATAACAACAAATATCGGTCGTAATGACTCTCAGAAGTCAACCACTTCAAGTGGATATGTCGACTCTAGTGATGATTAAGATTAGTAGGTAATATTCTTCGAATGCTTTCTCAAACAC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9248#0 TTCACAAACAACTGACACGTTAAGGTTGGACACACTTTCCACTGAACAATCGGATGCAAT 60
consensus_9248#1 ------------------------------------------------------------
consensus_9248#0 ACATAGTGGATTTGATTTATCTGCAGACAATTCAGATCAAGATTTGGATTCGGTAGCTGC 120
consensus_9248#1 ------------------------------------------------------------
consensus_9248#0 ACAGCTTGTGTCTGATGTGTTGGAAAATGCCAAAAACTATTTCTCAAATCATATCACAAA 180
consensus_9248#1 ------------------------------------------------------------
consensus_9248#0 ATCTAATGATGCAGAACAAAAAACAGTGAATGTTATTCGCGATAGCGGATGTGCACCATC 240
consensus_9248#1 ------------------------------------------------------------
consensus_9248#0 TGCCACAGATGAAGATGAAGATTATTATTATGAAGAAGAAATTGATGATGATGTTGATGA 300
consensus_9248#1 ------------------------------------------------------------
consensus_9248#0 TGATCACGTGAATAACGATGAAACAGTCGAAGAAATATCAGAAAATCATATTGATATCTT 360
consensus_9248#1 ------------------------------------------------------------
consensus_9248#0 AACATCATCTGGAACTATTTCCACTTCAGACACTTCAACTCCTAAATTTGTAGGTGTTGC 420
consensus_9248#1 --CGGCA-CGAGGACTATTTCCACTTCAGACACTTCAACTCCTAAATTTGTAGGTGTTGC 57
* ** * * ***********************************************
consensus_9248#0 TTCTATTTTCGATGATGCTTCATTGGATCAAAGCAATCAGTTGGATAAGACATCGTCTAT 480
consensus_9248#1 TTCTATTTTCGATGATGCTTCATTGGATCAAAGCAATCAGTTGGATAAGACATCGTCTAT 117
************************************************************
consensus_9248#0 ACACGATGATTTACTCATTGATAATGATGTTATTGATGTTGTAGCACCGTGTCCTGCTAT 540
consensus_9248#1 ACACGATGATTTACTCATTGATAATGATGTTATTGATGTTGTAGCACCGTGTCCTGCTAT 177
************************************************************
consensus_9248#0 TTTTATGTCTGGAATTACCACTTCTATTGATCCTCCTACTATTATTACAACAACAACAA- 599
consensus_9248#1 TTTTATGTCTGGAATTACCACTTCTATTGATCCTCCTACTATTATTACAACAACAACAAC 237
***********************************************************
consensus_9248#0 --ATATTATTACTAACAATAATACTACAATAACAACAAATATCGGTCGTAATGACTCTCA 657
consensus_9248#1 AAATATTATTACTAACAATAATACTACAATAACAACAAATATCGGTCGTAATGACTCTCA 297
**********************************************************
consensus_9248#0 GAAGTCAACCACTTCAAGTGGATATGTCGACTCTAGTGATGATTAAGATTAGTAGGTAAT 717
consensus_9248#1 GAAGTCAACCACTTCAAGTGGATATGTCGACTCTAGTGATGATTAAGATTAGTAGGTAAT 357
************************************************************
consensus_9248#0 ATTCTTCGAATGCTTTCTCAAACACGAACTTTTTCAAAAAAAAAAAGAAATTAATATCTA 777
consensus_9248#1 ATTCTTCGAATGCTT-CTCAAACACG---------------------------------- 382
*************** **********
consensus_9248#0 GTTTATCAATAATGAGTTGATTACCTTTCAGACATCTGATTAACCTCGTCATAAAAAAAA 837
consensus_9248#1 ------------------------------------------------------------
consensus_9248#0 TCATTTTTGTTGTATGATAATGATAATCAGAATAGGAAGACGGATATGTTTTCTATCTAG 897
consensus_9248#1 ------------------------------------------------------------
consensus_9248#0 ATTATATTTTTGTGTGTATGTATGTATGTGTGCTGTATGACTTTTTTTGAATAACATGCA 957
consensus_9248#1 ------------------------------------------------------------
consensus_9248#0 TTTCATTTGTGACGCCGTTTATTTTCAAAACTTATTATGTCTTTAACCCATCCTCTCTCT 1017
consensus_9248#1 ------------------------------------------------------------
consensus_9248#0 ATATATACATATATCACCTACAATTGTTTGAAATAGACATTGTTCCTGGCGTTTTTTTCA 1077
consensus_9248#1 ------------------------------------------------------------
consensus_9248#0 CCATGTTTTACACGTACATACACAAACGCTTTCGCATCAGGTATGCTCGNGTATCTTTTT 1137
consensus_9248#1 ------------------------------------------------------------
consensus_9248#0 TGTTGGATATGTATGCGTGTACTTATTTTATCATATTTAATTTAGTTTATTACTCCTTTT 1197
consensus_9248#1 ------------------------------------------------------------
consensus_9248#0 CAAAGAACATTCTACTTTTTTTTGTTTCAATTATTTAAACATTATGTGCCTTCCATTTTT 1257
consensus_9248#1 ------------------------------------------------------------
consensus_9248#0 TGAATAGTTCGATTTCTTCCAAATATTTGTATTTAGAACAAGATAGACATGATTGTATTA 1317
consensus_9248#1 ------------------------------------------------------------
consensus_9248#0 TACCCGCGAAAAAAAAAGGTTTTTGTATGTGTACGTGATAATTAGCAACTTGTTTCTGTT 1377
consensus_9248#1 ------------------------------------------------------------
consensus_9248#0 TTGCAAAAATTCATACATACACCTAAAAAGAAACATTCATTGTTTATACTGTTTACGTAT 1437
consensus_9248#1 ------------------------------------------------------------
consensus_9248#0 TTTCTTTTTGTTTGAATAAAATATGTATCAATGTACACACGTGGATCGTGTGCTTTTTAT 1497
consensus_9248#1 ------------------------------------------------------------
consensus_9248#0 AAATTTGTGTGTAAATACACTAATCCTGTTTTCAATAGTGACACTATACTACTAATAATA 1557
consensus_9248#1 ------------------------------------------------------------
consensus_9248#0 GTACTACTACTACTACTACCACTACTATACTCATTAATACAGAACATCTTCATTTTATTC 1617
consensus_9248#1 ------------------------------------------------------------
consensus_9248#0 TAAACTTATTTTCATTACAAGTATTTAACTCTCATCATTTGACATTGTTAGTTATAATTT 1677
consensus_9248#1 ------------------------------------------------------------
consensus_9248#0 TATTTCCTATTAAAGAATAAATTACACTCACATATTTACCTAATTACACANATTTATTGA 1737
consensus_9248#1 ------------------------------------------------------------
consensus_9248#0 ATAAATAAATAAATAACCAGTGGTAAAAGAAGAGACACATCAATATACTGTTTCCTT 1794
consensus_9248#1 ---------------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||