cluster # 9257

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Schistosoma mansoni
cluster # 9257 cluster # 9257 Sequences # 9 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9257#0 length = 452 sequences # 4
consensus_9257#1 length = 379 sequences # 2

consensus_9257#2 length = 325 sequences # 1
consensus_9257#3 length = 196 sequences # 2

consensusID : consensus_9257#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 452
fasta sequence

                              [TAAAAACAAGAGTTAAGAAATAAGGAACTGATTCCCAATAATTTATATAAATGCCAAATCGCTTACGACTGGTAGTCCAATATCGGTATCAAAATTAAGTACATATTATTGATAATACATAAAATATG-AAAATAAAAATG-TATATCAAAGTCTAGCATCTTTAAATATACGCCTCATGGTCACACTCACTCCGGAACGACTTTGACATGAATTAGCAAGATAATTTATATTAAACCGATAGGGTGAAATTCCACACATAGAAAAGTCAATGATGTGTTCTGTTTCCGCCTGTGAGCTACCTAAAGATGGAGCATAAGCTGAAGGAGAGTTGAAGTGTTCAAGAATGTTGCATAATTCATCTCTCAGTTGATTGCTGATTTGACGACGATGATCCTCTTTTTCATTTGCACTGACAGTTTTCAAAATCACATTTACAATCCAACGTTCCCAAG]

[+] EMBL CD145146             [TAAAAACAAGAGTTAAGAAATAAGGAACTGATTCCCAATAATTTATATAAATGCCAAATCGCTTACGACTGGTAGTCCAATATCGGTATCAAAATTAAGTACATATTATTGATAATACATAAAATATG AAAATAAAAATG TATATCAAAGTCTAGCATCTTTAAATATACGCCTCATGGTCACACTCACTCCGGAACGACTTTGACATGAATTAGCAAGATAATTTATATTAAACCGATAGGGTGAAATTCCACACATAGAAAAGTCAATGATGTGTTCTGTTTCCGCCTGTGAGCTACCTAAAGATGGAGCATAAGCTGAAGGAGAGTTGAAGTGTTCAAGAATGTTGCATAATTCATCTCTCAGTTGATTGCTGATTTGACGACGATGATCCTCTTTTTCATTTGCACTGACAGTTTTCAAAATCACATTTACAATCCAACGTTCCCAAG]
[-] EMBL CD140497             [                      AGGAACTGATTCCCAATAATTGATATAAATGCCAAGTCGCTTACGACTGGTAGTCCAATATCGGTATCAAAATTAAGTACATATTATTGATAATACATAATATACG AAAATAGAAATG TATATCAAAGTCTAGCATCTTTAAATATACGCCTCATGGTCACACTCACTCCGGAACGACTTTGACATGAATTAGCAAGATAATTTATATTAAACCGATAGGGTGAAATTCCACACATAGAAAAGTCAATGATGTGTTCTGTTTCCGCCTGTGAGCTACCTAAAGATGGAGCATAAGCTGAAGGAGAGTTGAAGTGTTCAAGAATGTTGCATAATTCATCTCTCAGTTGATTGCTGATTTGACG                                                                    ]
[-] EMBL CD140490             [                      AGGAACTGATTCCCAATAATTTATATAAATGCCAAATCGCTTACGACTGGTAGTCCAATATCGGTATCAAAATTAAGTACATATTATTGATAATACATAAAATATG AAAATAAAAATG TATATCAAAGTCTAGCATCTTTAAATATACGCCTCATGGTCACACTCACTCCGGAACGACTTTGACATGAATTAGCAAGATAATTTATATTAAACCGATAGGGTGAAATTCCACACATAGAAAAGTCAATGATGTGTTCTGTTTCCGCCTGTGAGCTACCTAAAGATGGAGCATAAGCTGAAGGAGAGTTGAAGTGTTCAAGAATGTTGCATAATTCATCTCTCAGTTGATTGCTGATTTGACG                                                                    ]
[-] EMBL CD140577             [                      AGGAACTGATTCCCAATAATTTATATAAATGCCAAATCGCTTACGACTGGTAGTCCAATATCGGTATCAAAATTAAGTACATATTATTGATAATACATAAAATATGCAAAATAAAAATGCTATATCAAAGTCTAGCATCTTTAAATATACGCCTCACGGTCACACTCACTCCGGAACGACTTTGACATGAATTAGCAAGATAATTTATATTAAACCGATAGGGTGAAATTCCACACATAGAAAAGTCAATGATGTGT                                                                                                                                                                               ]




>consensus_9257#0
TAAAAACAAGAGTTAAGAAATAAGGAACTGATTCCCAATAATTTATATAAATGCCAAATC
GCTTACGACTGGTAGTCCAATATCGGTATCAAAATTAAGTACATATTATTGATAATACAT
AAAATATGAAAATAAAAATGTATATCAAAGTCTAGCATCTTTAAATATACGCCTCATGGT
CACACTCACTCCGGAACGACTTTGACATGAATTAGCAAGATAATTTATATTAAACCGATA
GGGTGAAATTCCACACATAGAAAAGTCAATGATGTGTTCTGTTTCCGCCTGTGAGCTACC
TAAAGATGGAGCATAAGCTGAAGGAGAGTTGAAGTGTTCAAGAATGTTGCATAATTCATC
TCTCAGTTGATTGCTGATTTGACGACGATGATCCTCTTTTTCATTTGCACTGACAGTTTT
CAAAATCACATTTACAATCCAACGTTCCCAAG

consensusID : consensus_9257#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 379
fasta sequence

                              [AAACCCCTTTTCTGTGAACCACAAACTCCAAGTTAATTGCACCACGAACTTCGCCATTATTGTTAGATGAACAGCTATCACGATGCATGGCTTCAACAAAGGCTGAAACTGAAGTCGCCACCTTTTCGATAAGTTGGTTTGAGTTTATACACACATAAGTCAAGTCAAGACTTTTACAATCCACATCACATATGCCAAGATAGGAATTGTAGCTCACTGCTCCTCCTTTAAAATCAAGAGTCGGTAACGTCCTATGAAGTAAAATTGTATGAAATAAAGCTGAAACAACATCCGAAATTTCAGGTTCTACAACAGAGAAGATAAAGGAATATTCTCTGCAATTCATCACGGGTAAGCCCAGGTCAAATCTGCCACCACG]

[+] EMBL CD186543             [AAACCCCTTTTCTGTGAACCACAAACTCCAAGTTAATTGCACCACGAACTTCGCCATTATTGTTAGATGAACAGCTATCACGATGCATGGCTTCAACAAAGGCTGAAACTGAAGTCGCCACCTTTTCGATAAGTTGGTTTGAGTTTATACACACATAAGTCAAGTCAAGACTTTTACAATCCACATCACATATGCCAAGATAGGAATTGTAGCTCACTGCTCCTCCTTTAAAATCAAGAGTCGGTAACGTCCTATGAAGTAAAATTGTATGAAATAAAGCTGAAACAACATCCGAAATTTCAGGTTCTACAACAGAGAAGATAAAGGAATATTCTCTGCAATTCATCACGGGTAAGCCCAGGTCAAATCTGCCACCAC ]
[-] EMBL CD098059             [                        ACTCCAAGTTAATTGCACCACGAACTTCGCCATTATTGTTAGATGAACAGCTATCACGATGCATGGCTTCAACAAAGGCTGAAACTGAAGTCGCCACCTTTTCGATAAGTTGGTTTGAGTTTATACACACATAAGTCAAGTCAAGACTTTTACAATCCACATCACATATGCCAAGATAGGAATTGTAGCTCACTGCTCCTCCTTTAAAATCAAGAGTCGGTAACGTCCTATGAAGTAAAATTGTATGAAATAAAGCTGAAACAACATCCGAAATTTCAGGTTCTACAACAGAGAAGATAAAGGAATATTCTCTGCAATTCATCACAGGTAAGCCCAGGTCAAATCTGCCACCACG]




>consensus_9257#1
AAACCCCTTTTCTGTGAACCACAAACTCCAAGTTAATTGCACCACGAACTTCGCCATTAT
TGTTAGATGAACAGCTATCACGATGCATGGCTTCAACAAAGGCTGAAACTGAAGTCGCCA
CCTTTTCGATAAGTTGGTTTGAGTTTATACACACATAAGTCAAGTCAAGACTTTTACAAT
CCACATCACATATGCCAAGATAGGAATTGTAGCTCACTGCTCCTCCTTTAAAATCAAGAG
TCGGTAACGTCCTATGAAGTAAAATTGTATGAAATAAAGCTGAAACAACATCCGAAATTT
CAGGTTCTACAACAGAGAAGATAAAGGAATATTCTCTGCAATTCATCACGGGTAAGCCCA
GGTCAAATCTGCCACCACG

consensusID : consensus_9257#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 325
fasta sequence

                              [AATGCCACTCAAGGTCGTGACTGGCAAATTCGATCTGGGCTTACCTGTGATGAATTGCAGAGAATATTCCTTTATCTTCTCTGTTGTAGAACCTGAAATTTCGGATGTTGTTTCAGGTGTGTATAAACTCAAACCAACTTATCGAAAAGGTGGCGACTTCAGTTTCAGCCTTTGTTGAAGCCATGCATCGTGATAGCTGTTCATCTAACAATAATGGCGAAGTTCGTGGTGCAATTAACTTGGAGTTTATGGTTCACAGAAAAGGGGTTTGGTTGGGACCAGGAGCCTCGACTTGGGAACGTTGGATTGTAAATGTGATTTTGAA]

[+] EMBL CD187014             [AATGCCACTCAAGGTCGTGACTGGCAAATTCGATCTGGGCTTACCTGTGATGAATTGCAGAGAATATTCCTTTATCTTCTCTGTTGTAGAACCTGAAATTTCGGATGTTGTTTCAGGTGTGTATAAACTCAAACCAACTTATCGAAAAGGTGGCGACTTCAGTTTCAGCCTTTGTTGAAGCCATGCATCGTGATAGCTGTTCATCTAACAATAATGGCGAAGTTCGTGGTGCAATTAACTTGGAGTTTATGGTTCACAGAAAAGGGGTTTGGTTGGGACCAGGAGCCTCGACTTGGGAACGTTGGATTGTAAATGTGATTTTGAA]




>consensus_9257#2
AATGCCACTCAAGGTCGTGACTGGCAAATTCGATCTGGGCTTACCTGTGATGAATTGCAG
AGAATATTCCTTTATCTTCTCTGTTGTAGAACCTGAAATTTCGGATGTTGTTTCAGGTGT
GTATAAACTCAAACCAACTTATCGAAAAGGTGGCGACTTCAGTTTCAGCCTTTGTTGAAG
CCATGCATCGTGATAGCTGTTCATCTAACAATAATGGCGAAGTTCGTGGTGCAATTAACT
TGGAGTTTATGGTTCACAGAAAAGGGGTTTGGTTGGGACCAGGAGCCTCGACTTGGGAAC
GTTGGATTGTAAATGTGATTTTGAA

consensusID : consensus_9257#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 196
fasta sequence

                              [TCGTGGTGGCAGATTTGACCTGGGCTTACCTGTGATGAATTGCAGAGAATATTCCTTTATCTTCTCTGTTGTAGAACCTGAAATTTCGGATGTTGTTTCAGGTATCCGATTTGTGGGGGCGTTGTGTTTCAGCTTTATTTCATACAATTTTACTTCATAGGACGTTACCGACTGTGAGTTTCTATAGTTCTTTTAT]

[+] EMBL CD202565             [TCGTGGTGGCAGATTTGACCTGGGCTTACCTGTGATGAATTGCAGAGAATATTCCTTTATCTTCTCTGTTGTAGAACCTGAAATTTCGGATGTTGTTTCAGGTATCCGATTTGTGGGGGCGTTGTGTTTCAGCTTTATTTCATACAATTTTACTTCATAGGACGTTACCGACTGTGAGTTTCTATAGTTCTTTTAT]
[+] EMBL CD202601             [TCGTGGTGGCAGATTTGACCTGGGCTTACCTGTGATGAATNGCNAAGAATATTCCTTTATCTTCTCTGTTGTAGAACCTGAAATTTCGGATGTTGTTTCAGGTATCCGATTCGTTGTGGGGGTGTGTTTCAGCTTTATTTCATACAATTGTACTTCATAGGACGTTACCGACTGTGAGTTTCTATAGTTCTTTTAT]




>consensus_9257#3
TCGTGGTGGCAGATTTGACCTGGGCTTACCTGTGATGAATTGCAGAGAATATTCCTTTAT
CTTCTCTGTTGTAGAACCTGAAATTTCGGATGTTGTTTCAGGTATCCGATTTGTGGGGGC
GTTGTGTTTCAGCTTTATTTCATACAATTTTACTTCATAGGACGTTACCGACTGTGAGTT
TCTATAGTTCTTTTAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9257#2      ------------------------------------------------------------
consensus_9257#3      ------------------------------------------------------------
consensus_9257#1      ------------------------------------------------------------
consensus_9257#0      TAAAAACAAGAGTTAAGAAATAAGGAACTGATTCCCAATAATTTATATAAATGCCAAATC 60
                                                                                  

consensus_9257#2      --------------------------------------------------AATGCCACTC 10
consensus_9257#3      ------------------------------------------------------------
consensus_9257#1      ----AAACCCCTTTTCTGTGAACCACAAACTCCAAGTTAATTGCACCACGAACTTCGCCA 56
consensus_9257#0      GCTTACGACTGGTAGTCCAATATCGGTATCAAAATTAAGTACATATTATTGATAATACAT 120
                                                                                  

consensus_9257#2      AAGGT-CGTGACTGGCAAATTCGATCTGGGCTTACCTGTGATGAATTGCAGAGAATATTC 69
consensus_9257#3      ----T-CGTGG-TGGCAGATTTGACCTGGGCTTACCTGTGATGAATTGCAGAGAATATTC 54
consensus_9257#1      TTATT-GTTAGATGAACAGCTATCACGATGCATGGCTTCAACAAAGGCTGAAACTGAAGT 115
consensus_9257#0      AAAATATGAAAATAAAAATGTATATCAAAGTCTAGCATCTTTAAAT-ATACGCCTCATGG 179
                          *       *       *    *   *  *  *       **           *   

consensus_9257#2      CTTTATCTTCTCTGTTG----TAGAACCTGAAATTTCG-GATG-T-TGTTTCAGGTGTGT 122
consensus_9257#3      CTTTATCTTCTCTGTTG----TAGAACCTGAAATTTCG-GATG-T-TGTTTCAGGTAT-- 105
consensus_9257#1      CGCCACCTTTTCGATAA----GTTGGTTTGAGTTTATA-CACA-CATAAGTCAAGTCAAG 169
consensus_9257#0      TCACACTCACTCCGGAACGACTTTGACATGAATTAGCAAGATAATTTATATTAAACCGAT 239
                          *     **                ***  *      *     *   * *       

consensus_9257#2      ATAAACTCAAACCAACTTATCGAAA--AGGTGGCGACTTCAGTTTCA--GCCTTTGTTGA 178
consensus_9257#3      -----------CCGATTTGT--------GGGGGCG--TTGTGTTTCA--GCTTTATTTCA 142
consensus_9257#1      ACTTTTACAATCCACATCACATATGCCAAGATAGGAATTGTAGCTCACTGCTCCTCCTTT 229
consensus_9257#0      AGGGTGAAATTCCACACATAGAAAAGTCAATGATGTGTTCTGTTTCCG-CCTGTGAGCTA 298
                                 **                     *  **     **    *         

consensus_9257#2      AGCCATGCATCGTGATAGCTGTTCATCTAACAATAATGGCGAAGTTCGTGGTGCAATTA- 237
consensus_9257#3      TACAATTTTACTTCATAGGACGTTACCGACTGTGAGTTTCTATAGTTCTTTTAT------ 196
consensus_9257#1      AAAATCAAGAGTCGGTAACGTCCTATGAAGTAAAATTGTATGAAATAAAGCTGAAACAAC 289
consensus_9257#0      CCTAAAGATGGAGCATAAGCTGAAGGAGAGTTGAAGTGTTCAAGAATGTTGCATAATTCA 358
                                     **           *     * *                       

consensus_9257#2      ACTTGGAGTTTATGGTTC----ACAGAAAAGGGGTTTGGTTGGGACCAGGAGCCTCGACT 293
consensus_9257#3      ------------------------------------------------------------
consensus_9257#1      ATCCGAAATTTCAGGTTCTACAACAGAGAAGATAAAGGAATATTCTCTGCAATTCATCAC 349
consensus_9257#0      TCTCTCAGTTGATTGCTGATTTGACGACGATGATCCTCTTTTTCATTTGCACTGACAGTT 418
                                                                                  

consensus_9257#2      TGGGAACGTTGGATTGTAAATGTGATTTTGAA-- 325
consensus_9257#3      ----------------------------------
consensus_9257#1      GGGTAAGCCCAGGTCAAATCTGCCACCACG---- 379
consensus_9257#0      TTCAAAATCACATTTACAATCCAACGTTCCCAAG 452