cluster # 9266

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Schistosoma mansoni
cluster # 9266 cluster # 9266 Sequences # 9 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9266#0 length = 982 sequences # 8

consensus_9266#1 length = 185 sequences # 1

consensusID : consensus_9266#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 982
fasta sequence

                              [AATTCCGATTAAAGTTATTGACTTTCACAATTCCTTTTTTTTCCCAATAATTCATCATTCTAACCAAATCAAAAGCGTAAACG-TTAAAAGAAAAAAAATTGAAGAAAAATGTAAATGTGTACGGTGTACGACAGCTAATGCCTGTTCACACACACACA-ACACACACTCACCTATAACAAACAAAATCGTTTATTCTATTTATTCAATATATTTACATTGTATCCTAATCAGATTCAATATGATGATTCGTAGAATGATTATTTCATTATTTGTTTATTTTGATTATTTTAATAAACTGCTCATAATTCATTCTATATACATGGTGATTATTTTTATTGATCATTGAATCATTTAAATCTGGCGCTTCTTTTTTTATTTAAAAAAACAAAACAATAAATGAACTATTGATTTAAACATTGAATAGAAATCATCTTGATCATGATGATGATGATGGAGACGCCTACATTGTTATAACCATATAACTTTACTATCATTATAAGTAGTATTATTCTTTTGTCATATTAACGATAACAATCTTTTACCTCAAAAATGATTCTTCCCCCCCTCTTTCTCTCTCCTTTTATCTCCATTCGTCATTATTGTTTACAATGAAGAAAGATACTGAAAAAGACAAAAAAAAATTTAATCCGATAGGATGGGGGATAATTTGGTGAATTTTTTCAAATACATTAATCCTAGAAAAAAAAAAGATACAAAATACATGATATTGTTGGTTATATTGATGTTTGAACTCTATTAGTCTCATTATTGAAATCATATTCGACTCAATATATCATATGTACTAAACTTATCAAAAACGAATATACCTTTCACTGCTGCTTTCCTTTCTGTTTAATGACTAGATATAATATAATACTTTTGTTTGTTTAATTATCTACAATCAGATGATTTCTATATGGATAAACTGCTGAATTGATTNTGCAATCATTATCATTACTGGTATGNAATTTCTTTTTTTTTG]

[-] EMBL CD066457             [AATTCCGATTAAAGTTATTGACTTTCACAATTCCTTTTTTTTCCCAATAATTCATCATTCTAACCAAATCAAAAGCGTAAACG TTAAAAGAAAAAAAATTGAAGAAAAATGTAAATGTGTACGGTGTACGACAGTTAATGCCTGTTCACACACACACATACACACACTCACNTATAACAAACAAAATCGTTTATTCTATTTATTCAATATATTTACATTGTATCCTAATCAGATTCAATATGATGATTCGTAGAATGATTATTTCATTATTTGTTTATTTTGATTATTTTAATAAACTGCTCATAATTCATTCTATATACATGGTGATTATTTTTATTGATCATTGAATCATTTAAATCTGGCGCTTCTTTTTTTATTTAAAAAAACAAAACAATAAATGAACTATTGATTTAAACATTGAATAGAAATCATCTTGATCATGATGATGATGATGGAGACGCCTACATTGTTATAACCATATAACTTTACTATCATTATAAGTAGTATTATTCTTTTGTCATATTAACGATAACAATCTTTTACCTCAAAAATGATTCTTCCCCCCCT                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AI976947             [                                                                CAAATCAAAAGCGTAAACGCTTAAAACAAAAAAAATTGAAGAAAAATGTAAATGTGTACGGTGTACGACAGCTAATGCCTGTTCACACACAC    ACACACACTCACCTATAACAAACAAAATCGTTTATTCTATTTATTCAATATATTTACATTGTATCCTAATCAGATTCAATATGATGATTCGTAGAATGATTATTTCATTATTTGTTTATTTTGATTATTTTAATAAACTGCTCATAATTCATTCTATATACATGGTGATTATTTTTATTGATCATTGAATCATTTAAATCTGGCGCTTCTTTTTTTATTTAAAAAAACAAAACAATAAATGAACTATTGATTTAAACATTGAATAGAAATCATCTTGATCATGATGATGATGATGGAGACGCCTACATTGTTATAACCATATAACTTTACTATCATTATAAGNAGNATTATTCTTTTGTCATATTAACGATAACAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD082859             [                                                                                                            AATGTAAATGTGTACGGTGTACGACAGCTAATGCCTGTTCACACACACACACACACACACTCACCTATAACAAACAAAATCGTTTATTCTATTTATTCAATATATTTACATTGTATCCTAATCAGATTCAATATGATGATTCGTAGAATGATTATTTCATTATTTGTTTATTTTGATTATTTTAATAAACTGCTCATAATTCATTCTATATACATGGTGATTATTTTTATTGATCATTGAATCATTTAAATCTGGCGCTTCTTTTTTTATTTAAAAAAACAAAACAATAAATGAACTATTGATTTAAACATTGAATAGAAATCATCTTGATCATGATGATGATGATGGAGACGCCTACATTGTTATAACCATATAACTTTACTATCATTATAAGTAGTATTATTCTTTTGTCATATTAACGATAACAATCTTTTACCTCAAAAATGATTCTTCCCCCCCTCTTTCTCTCTCCTTTTATCTCCATTCGTCATTATTGTTTACAATGAAGAAAGATACTnng                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD078368             [                                                                                                                                                                                                                                                                                                                                                                 TTAAATCTGGCGCTTCTTTTTTTATTTAAAAAAACAAAACAATAAATGAACTATTGATTTAAACATTGAATAGAAATCATCTTGATCATGATGATGATGATGGAGACGCCTACATTGTTATAACCATATAACTTTACTATCATTATAAGTAGTATTATTCTTTTGTCATATTAACGATAACAATCTTTTACCTCAAAAATGATTCTTCCCCCCCTCTTTCTCTCTCCTTTTATCTCCATTCGTCATTATTGTTTACAATGAAGAAAGATACTGAAAAAGACAAAAAAAAATTTAATCCGATAGGATGGGGGATAATTTGGTGAATTTTTTCAAATACATTAATCCTAGAAAAAAAAAAGATACAAAATACATGATATTGTTGGTTATATTGATGTTTGAACTCTATTAGTCTCATTATTGAAATCATATTCGACTCAATATATCATATGTACTAAACTTATCAAAAACGAATATACCTTTCACTGCTGCTTTCCTTTCTGTTTAATGACTAGATATAATATAATACTTTTGTTTGTTTAATTATCTACAATCAGATGATTTCTATATGGATAAACTGCTGAATTGATTNTGCAATCATTATCATTACTGGTATGNAATTTCTTTTTTTTTG]
[+] EMBL CD078282             [                                                                                                                                                                                                                                                                                                                                                                 TTAAATCTGGCGCTTCTTTTTTTATTTAAAAAAACAAAACAATAAATGAACTATTGATTTAAACATTGAATAGAAATCATCTTGATCATGATGATGATGATGGAGACGCCTACATTGTTATAACCATATAACTTTACTATCATTATAAGTAGTATTATTCTTTTGTCATATTAACGATAACAATCTTTTACCTCAAAAATGATTCTTCCCCCCCTCTTTCTCTCTCCTTTTATCTCCATTCGTCATTATTGTTTACAATGAAGAAAGATACTGAAAAAGACAAAAAAAAATTTAATCCGATAGGATGGGGGATAATTTGGTGAATTTTTTCAAATACATTAATCCTAGAAAAAAAAAAGATACAAAATACATGATATTGTTGGTTATATTGATGTTTGAACTCTATTAGTCTCATTATTGAAATCATATTCGACTCAATATATCATATGTACTAAACTTATCAAAAACGAATATACCTTTCACTGCTGCTTTCCTTTCTGTTTAATGACTAGATATAATATAATACTTTTGTTTGTTTAATTATCTACAATCAGATGATTTCTATATGGATAAACTGCTGAATTGATTNTGCAATCATTATCATTACTGNTATGNAATTTCTTTTTTTTT ]
[+] EMBL CD083819             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ATAGGATGGGGGATAATTTGGTGAATTTTTTCAAATACTTTAATCCTAGAAAAAAAAAAGATACAAAATACTTGATATGGTGGGTTAT                                                                                                                                                                                                                                                    ]
[-] EMBL CD076445             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ganTAATTTGGTGAATTTTTTCAAATACATTAATCCTAGAAAAAAAAAAGATACAAAATACATGATATTGTTGGTTATATTGATGTTTGAACTCTATTAGTCTCATTATTGAAATCATATTCGACTCAATATATCATATGTACTAAACTTATCAAAAACGAATATACCTTTCACTGCTGCTTTCCTTTCTGTTTAATGACTAGATATAATATAATACTTTTGTTTGTTTAATTATCTACAATCAGATGATTTCTATATGGATAAACTGCTGAATTGATTTTGCAATCATTATCATTACT                       ]
[-] EMBL CD072928             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              AAAAAAAAAGATCCAAAATACATGATATTGTTGGTTATATTGATGTNTGAACTCTATTAGTCTCATTATTGAAATCATATTCGACTCAATATATCATATGTACTAAACTTATCAAAAACGAATATACCTTTCACTGCTGCTTTCCTTTCTGTTTAATGACTAGATATAATATAATACTTTTGTTTGTTTAATTATCTACAATCAGATGATTTCTATATGGATAAACTGCTGAATTGATTTTGCAATCATTATCATTACT                       ]




>consensus_9266#0
AATTCCGATTAAAGTTATTGACTTTCACAATTCCTTTTTTTTCCCAATAATTCATCATTC
TAACCAAATCAAAAGCGTAAACGTTAAAAGAAAAAAAATTGAAGAAAAATGTAAATGTGT
ACGGTGTACGACAGCTAATGCCTGTTCACACACACACAACACACACTCACCTATAACAAA
CAAAATCGTTTATTCTATTTATTCAATATATTTACATTGTATCCTAATCAGATTCAATAT
GATGATTCGTAGAATGATTATTTCATTATTTGTTTATTTTGATTATTTTAATAAACTGCT
CATAATTCATTCTATATACATGGTGATTATTTTTATTGATCATTGAATCATTTAAATCTG
GCGCTTCTTTTTTTATTTAAAAAAACAAAACAATAAATGAACTATTGATTTAAACATTGA
ATAGAAATCATCTTGATCATGATGATGATGATGGAGACGCCTACATTGTTATAACCATAT
AACTTTACTATCATTATAAGTAGTATTATTCTTTTGTCATATTAACGATAACAATCTTTT
ACCTCAAAAATGATTCTTCCCCCCCTCTTTCTCTCTCCTTTTATCTCCATTCGTCATTAT
TGTTTACAATGAAGAAAGATACTGAAAAAGACAAAAAAAAATTTAATCCGATAGGATGGG
GGATAATTTGGTGAATTTTTTCAAATACATTAATCCTAGAAAAAAAAAAGATACAAAATA
CATGATATTGTTGGTTATATTGATGTTTGAACTCTATTAGTCTCATTATTGAAATCATAT
TCGACTCAATATATCATATGTACTAAACTTATCAAAAACGAATATACCTTTCACTGCTGC
TTTCCTTTCTGTTTAATGACTAGATATAATATAATACTTTTGTTTGTTTAATTATCTACA
ATCAGATGATTTCTATATGGATAAACTGCTGAATTGATTNTGCAATCATTATCATTACTG
GTATGNAATTTCTTTTTTTTTG

consensusID : consensus_9266#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 185
fasta sequence

                              [ACGAGGGTTACCATTCTGATGTTGGAGCGGCCTACATTGTTATAACCATATAACTTTACTATCATTATAAGTAGTATTATTCTTTTGTCATATTAACGATAACAATCTTTTACCTCAAAAATGATTCTTCCCCCCCTCTTTCTCTCTCCTTTTATCTCCATTCGTCATTATTGTTTACAATGAAG]

[+] EMBL CD083818             [ACGAGGGTTACCATTCTGATGTTGGAGCGGCCTACATTGTTATAACCATATAACTTTACTATCATTATAAGTAGTATTATTCTTTTGTCATATTAACGATAACAATCTTTTACCTCAAAAATGATTCTTCCCCCCCTCTTTCTCTCTCCTTTTATCTCCATTCGTCATTATTGTTTACAATGAAG]




>consensus_9266#1
ACGAGGGTTACCATTCTGATGTTGGAGCGGCCTACATTGTTATAACCATATAACTTTACT
ATCATTATAAGTAGTATTATTCTTTTGTCATATTAACGATAACAATCTTTTACCTCAAAA
ATGATTCTTCCCCCCCTCTTTCTCTCTCCTTTTATCTCCATTCGTCATTATTGTTTACAA
TGAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9266#0      AATTCCGATTAAAGTTATTGACTTTCACAATTCCTTTTTTTTCCCAATAATTCATCATTC 60
consensus_9266#1      ------------------------------------------------------------
                                                                                  

consensus_9266#0      TAACCAAATCAAAAGCGTAAACGTTAAAAGAAAAAAAATTGAAGAAAAATGTAAATGTGT 120
consensus_9266#1      ------------------------------------------------------------
                                                                                  

consensus_9266#0      ACGGTGTACGACAGCTAATGCCTGTTCACACACACACAACACACACTCACCTATAACAAA 180
consensus_9266#1      ------------------------------------------------------------
                                                                                  

consensus_9266#0      CAAAATCGTTTATTCTATTTATTCAATATATTTACATTGTATCCTAATCAGATTCAATAT 240
consensus_9266#1      ------------------------------------------------------------
                                                                                  

consensus_9266#0      GATGATTCGTAGAATGATTATTTCATTATTTGTTTATTTTGATTATTTTAATAAACTGCT 300
consensus_9266#1      ------------------------------------------------------------
                                                                                  

consensus_9266#0      CATAATTCATTCTATATACATGGTGATTATTTTTATTGATCATTGAATCATTTAAATCTG 360
consensus_9266#1      ------------------------------------------------------------
                                                                                  

consensus_9266#0      GCGCTTCTTTTTTTATTTAAAAAAACAAAACAATAAATGAACTATTGATTTAAACATTGA 420
consensus_9266#1      ------------------------------------------------------------
                                                                                  

consensus_9266#0      ATAGAAATCATCTTGATCATGATGATGATGATGGAGACGCCTACATTGTTATAACCATAT 480
consensus_9266#1      ---------ACGAGGGTTACCATTCTGATGTTGGAGCGGCCTACATTGTTATAACCATAT 51
                               *    * * *  **  ***** *****  **********************

consensus_9266#0      AACTTTACTATCATTATAAGTAGTATTATTCTTTTGTCATATTAACGATAACAATCTTTT 540
consensus_9266#1      AACTTTACTATCATTATAAGTAGTATTATTCTTTTGTCATATTAACGATAACAATCTTTT 111
                      ************************************************************

consensus_9266#0      ACCTCAAAAATGATTCTTCCCCCCCTCTTTCTCTCTCCTTTTATCTCCATTCGTCATTAT 600
consensus_9266#1      ACCTCAAAAATGATTCTTCCCCCCCTCTTTCTCTCTCCTTTTATCTCCATTCGTCATTAT 171
                      ************************************************************

consensus_9266#0      TGTTTACAATGAAGAAAGATACTGAAAAAGACAAAAAAAAATTTAATCCGATAGGATGGG 660
consensus_9266#1      TGTTTACAATGAAG---------------------------------------------- 185
                      **************                                              

consensus_9266#0      GGATAATTTGGTGAATTTTTTCAAATACATTAATCCTAGAAAAAAAAAAGATACAAAATA 720
consensus_9266#1      ------------------------------------------------------------
                                                                                  

consensus_9266#0      CATGATATTGTTGGTTATATTGATGTTTGAACTCTATTAGTCTCATTATTGAAATCATAT 780
consensus_9266#1      ------------------------------------------------------------
                                                                                  

consensus_9266#0      TCGACTCAATATATCATATGTACTAAACTTATCAAAAACGAATATACCTTTCACTGCTGC 840
consensus_9266#1      ------------------------------------------------------------
                                                                                  

consensus_9266#0      TTTCCTTTCTGTTTAATGACTAGATATAATATAATACTTTTGTTTGTTTAATTATCTACA 900
consensus_9266#1      ------------------------------------------------------------
                                                                                  

consensus_9266#0      ATCAGATGATTTCTATATGGATAAACTGCTGAATTGATTNTGCAATCATTATCATTACTG 960
consensus_9266#1      ------------------------------------------------------------
                                                                                  

consensus_9266#0      GTATGNAATTTCTTTTTTTTTG 982
consensus_9266#1      ----------------------