cluster # 9273

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Schistosoma mansoni
cluster # 9273 cluster # 9273 Sequences # 9 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9273#0 length = 576 sequences # 3

consensus_9273#1 length = 396 sequences # 5
consensus_9273#2 length = 329 sequences # 1

consensusID : consensus_9273#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 576
fasta sequence

                              [ATAATATTCTAGGTCGCTAACTGGTCATAGCGCT-ACCTGGGATACAATGACGGGGATTAGGACCGTAATTCTTGTTTCATTAGCTGGATCCGTTTCTTTCACATTCTTACTCTTAGCCTGCGCGCTACCGCAATACAAGTAACATAATTAATTGGGAGTTTAATCGTGTTTAGTGTTTGGTGGCCACTATTCATGCTGATATTTTACATAATAGCACCAATTCCATTGTTGGTTGCTAAAAATTTCCAGGAAAGCCCTTCGTTGGGGGATGTGAGTGTTTTCCTGACCACAATCATAATAGTATCAGCATATGCACTGCCTATATTGTTTGCTCGAGCACTTAAAGAAAATCCTC-TATATATTTTCAAAGCAAAGAGTTATTCGCTTCTTGTAGATATTATGGGGTGCTTGTGGACTTACGTTATCAGCAAATACACTTATGTTTGCAACCATCTTTTTCCTAGTTTATCTGGTAGTCAAGTCTGATGATTTCGACAGTGGATTTTGATTTCGAACAGTAAATATCTCCCAAATTTTGATTCAATTTTAATGTAGTAACTGTATTATCTTCTGGAA]

[+] EMBL CD091701             [ATAATATTCTAGGTCGCTAACTGGTCATAGCGCTCACCTGGGATACAATGACGGGGATTAGGACCGTAATTCTTGTTTCATTAGCTGGATCCGTTTCTTTCACATTCTTACTCTTAGCCTGCGCGCTACCGCAATACAAGTAACATAATTAATTGGGAGTTTAATCGCGTTTAGTGTTTGGTGGCCACTATTCATGCTGATATCTTACATAATAGCACCAATTCCATTGTTGGTTGCTAAAAATTTCCACGAAAGCCCTTCGTTGGGGGATGa                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD091676             [   ATATTCTAGGTCGTTAACTGGTCATAGCGCT ACTTGGGATACAATGACGGGGATTAGGACCGTAATTCTTGTTTCACTAGCTGGATCCGTTTCTTTCACATTCTTACTCTTAGCCTGCGCGCTACCGCAATACAAGTAACATAATTAATTGGGAGTTTAATCGTGTTTAGTGTTTGGTGGCCACTATTCATGCTGATATTTTACATAATAGCACCAATTCCATTGTTGGTTGCTAAAAATTTCCAGGAAAGCCCTTCGTTGGGGGATGTGAGTGTTTTCCTGACCACAATCATAATAGTATCAGCATATGCACTGCCTATATTGTTTGCTCGAGCACTTAAAGAAAATCCTC TATATAT                                                                                                                                                                                                                      ]
[+] EMBL CD083320             [                                                                                         aggGTTTCTTTCACATTCTTACTCTTAGCCTGCGCGCTACCGCAATACAAGTAACATAATTAATTGGGAGTTTAATCGTGTTTAGTGTTTGGTGGCCACTATTCATGCTGATATTTTACATAATAGCACCAATTCCATTGTTGGTTGCTAAAAATTTCCAGGAAAGCCCTTCGTTGGGGGATGTGAGTGTTTTCCTGACCACAATCATAATAGTATCAGCATATGCACTGCCTATATTGTTTGCTCGAGCACCTAAAGAAAATCCTCTTGTA AGTTTCAAAGCAAAGAGTTATTCGCTTCTTGTAGATATTATGGGGTGCTTGTGGACTTACGTTATCAGCAAATACACTTATGTTTGCAACCATCTTTTTCCTAGTTTATCTGGTAGTCAAGTCTGATGATTTCGACAGTGGATTTTGATTTCGAACAGTAAATATCTCCCAAATTTTGATTCAATTTTAATGTAGTAACTGTATTATCTTCTGGAA]




>consensus_9273#0
ATAATATTCTAGGTCGCTAACTGGTCATAGCGCTACCTGGGATACAATGACGGGGATTAG
GACCGTAATTCTTGTTTCATTAGCTGGATCCGTTTCTTTCACATTCTTACTCTTAGCCTG
CGCGCTACCGCAATACAAGTAACATAATTAATTGGGAGTTTAATCGTGTTTAGTGTTTGG
TGGCCACTATTCATGCTGATATTTTACATAATAGCACCAATTCCATTGTTGGTTGCTAAA
AATTTCCAGGAAAGCCCTTCGTTGGGGGATGTGAGTGTTTTCCTGACCACAATCATAATA
GTATCAGCATATGCACTGCCTATATTGTTTGCTCGAGCACTTAAAGAAAATCCTCTATAT
ATTTTCAAAGCAAAGAGTTATTCGCTTCTTGTAGATATTATGGGGTGCTTGTGGACTTAC
GTTATCAGCAAATACACTTATGTTTGCAACCATCTTTTTCCTAGTTTATCTGGTAGTCAA
GTCTGATGATTTCGACAGTGGATTTTGATTTCGAACAGTAAATATCTCCCAAATTTTGAT
TCAATTTTAATGTAGTAACTGTATTATCTTCTGGAA

consensusID : consensus_9273#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 396
fasta sequence

                              [CGGGTTTTATAATATTCTAGGTCGTTAACTGGTCATAGCGCTACCTGGGATACAATGACGGGGATTAGGACCGTAATTCTTGTTTCACTAGCTGGATCCGTTTCTTTCACATTCTTACTCTTAGCCTGCGCGCTACCGCAATACAATGTTTGGTGGCCACTATTCATGCTGATATTTTACATAATAGCACCAATTCCATTGTTGGTTGCTAAAAATTTCCAGGAAAGCCCTTCGTTGGGGGATGTGAGTGTTTTCCTGACCACAATCATAATAGTATCAGCATATGCACTGCCTATATTGTTTGCTCGAGCACCTAAAGAAAATCCTCTTATATTATGGGGTGCTTGTGGACTTACGTTATCAGCAAATACACTTATGTTTGCAACCATCTTTTTC]

[+] EMBL CD111395             [CGGGTTTTATAATATTCTAGGTCGTTAACTGGTCATAGCGCTACCTGGGATACAATGACGGGGATTAGGACCGTAATTCTTGTTTCACTAGCTGGATCCGTTTCTTTCACATTCTTACTCTTAGCCTGCGCGCTACCGCAATACAATGTTTGGTGGCCACTATTCATGCTGATATTTTACATAATAGCACCAATTCCATTGTTGGTTGCTAAAAATTTCCAGGAAAGCCCTTCGTTGGGGGATGTGAGTGTTTTCCTGACCACAATCATAATAGTATCAGCATATGCACTGCCTATATTGTTTGCTCGAGCACCTAAAGAAAATCCTCTTATATTATGGGGTGCTTGTGGACTTACGTTATCAGCAAATACACTTATGTTTGCAA           ]
[+] EMBL CD163008             [ GGGTTTTATAATATTCTAGGTCGTTAACTGGTCATAGCGCTACCTGGGATACAATGACGGGGATTAGGACCGTAATTCTTGTTTCACTAGCTGGATCCGTTTCTTTCACATTCTTACTCTTAGCCTGCGCGCTACCGCAATACAATGTTTGGTGGCCACTATTCATGCTGATATTTTACATAATAGCACCAATTCCATTGTTGGTTGCTAAAAATTTCCAGGAAAGCCCTTCGTTGGGGGATGTGAGTGTTTTCCTGACCACAATCATAATAGTATCAGCATATGCACTGCCTATATTGTTTGCTCGAGCACCTAAAGAAAATCCTCTTATATTAGGGGGTGCTTGTGGACTTACGTTATCAGCAAATACACTTATGTTTGCAACCATCTTTTT ]
[-] EMBL CD111024             [  gtTTTTATAATATTCTAGGTCGTTAACTGGTCATAGCGCTACCTGGGATACAATGACGGGGATTAGGACCGTAATTCTTGTTTCACTAGCTGGATCCGTTTCTTTCACATTCTTACTCTTAGCCTGCGCGCTACCGCAATACTATGTTTGGTGGCCACTATTCATGCTGATATTTTACATAATAGCACCAATTCCATTGTTGGTTGCTAAAAATTTCCAGGAAAGCCCTTCGTTGGGGGATGTGAGTGTTTTCCTGACCACAATCATAATAGTATCAGCATATGCACTGCCTATATTGTTTGCTCGAGCACCTAAAGAAAATCCTCTTATATTATGGGGTGCTTGTGGACTTACGTTATCAGCAAATACACTTATGTTTGCAAC          ]
[-] EMBL CD092845             [           ATATTCTAGGTCGTTAACTGGTCATAGCGCTACCTGGGATACAATGACGGGGATTAGGGCCGTAATTCTTGTTTCACTAGCTGGATCCGTTTCTTTCACATTCTTACTCTTAGCCTGCGCGCTACCGCAATACAATGTTTGGTGGCCACTATTCATGCTGATATTTTACATAATAGCACCAATTCCATTGTTGGTTGCTAAAAATTTCCAGGAAAGCCCTTCGTTGGGGGATGTGAGTGTTTTCCTGACCACAATCATAATAGTATCAGCATATGCACTGCCTATATTGTTTGCTCGAGCACCTAAAGAAAATCCTCTTATATTATGGGGTGCTTGTGGACTTACGTTATCAGCAAATACACTTATGTTTGCAACCATCTTTTTC]
[-] EMBL CD181038             [                              aGTCATAGCAATACATAGGATACAATGACGGGGATTAGGACCGTAATTCTTGTTTCAATAGCTGGATCCGTTTCTTTCACATTCTGACTGTTAGCCTGCGCGGTACCGCAATACAATGTTTGGTGGCCACTATTCATGCTGATATTTTACATAATAGCACCAATTCCATTGTTGGTTGCTAAAAATTTCCAGGAAAGCCCTTCGTTGGGGGATGTGAGTGTTTTCCTGACCACAATCATAATAGTATCAGCATATGCACTGCCTATATTGTTTGCTCGAGCACCTAAAGAAAATCCTCTTATATTATGGGGTGCTTGTGGACTTACGTTATCAGCAAATACACTTATGTTTGCAACCATCTTTTTC]




>consensus_9273#1
CGGGTTTTATAATATTCTAGGTCGTTAACTGGTCATAGCGCTACCTGGGATACAATGACG
GGGATTAGGACCGTAATTCTTGTTTCACTAGCTGGATCCGTTTCTTTCACATTCTTACTC
TTAGCCTGCGCGCTACCGCAATACAATGTTTGGTGGCCACTATTCATGCTGATATTTTAC
ATAATAGCACCAATTCCATTGTTGGTTGCTAAAAATTTCCAGGAAAGCCCTTCGTTGGGG
GATGTGAGTGTTTTCCTGACCACAATCATAATAGTATCAGCATATGCACTGCCTATATTG
TTTGCTCGAGCACCTAAAGAAAATCCTCTTATATTATGGGGTGCTTGTGGACTTACGTTA
TCAGCAAATACACTTATGTTTGCAACCATCTTTTTC

consensusID : consensus_9273#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 329
fasta sequence

                              [TTGTTTCACTAGCTGGATCCGTTTCTTTCACAGTCTTACTCATAGCCGGCGCGCTACCGCAATACAAGTAACATAATTAATTGGGAGTTTAATCGTGTTTAGTGTTTGGTGGCCACTATTCACGCTGATATTTTACATAATAGCACCAATTCCATTGTTGGTTGCTAAAAATTTCCAGGAAAGCCCTTCGTTGGGGGATGTGAGTGTTTTCCTGACCACAATCATAATAGTATCAGCATATGCACTGCCTATAATGTAAGCTCGAGCACATAAAGAAGATCCTTTTATATTATGGGGTGCTTGTGGACTAACGTTATCAGCAAAGACAC]

[-] EMBL CD091758             [TTGTTTCACTAGCTGGATCCGTTTCTTTCACAGTCTTACTCATAGCCGGCGCGCTACCGCAATACAAGTAACATAATTAATTGGGAGTTTAATCGTGTTTAGTGTTTGGTGGCCACTATTCACGCTGATATTTTACATAATAGCACCAATTCCATTGTTGGTTGCTAAAAATTTCCAGGAAAGCCCTTCGTTGGGGGATGTGAGTGTTTTCCTGACCACAATCATAATAGTATCAGCATATGCACTGCCTATAATGTAAGCTCGAGCACATAAAGAAGATCCTTTTATATTATGGGGTGCTTGTGGACTAACGTTATCAGCAAAGACAC]




>consensus_9273#2
TTGTTTCACTAGCTGGATCCGTTTCTTTCACAGTCTTACTCATAGCCGGCGCGCTACCGC
AATACAAGTAACATAATTAATTGGGAGTTTAATCGTGTTTAGTGTTTGGTGGCCACTATT
CACGCTGATATTTTACATAATAGCACCAATTCCATTGTTGGTTGCTAAAAATTTCCAGGA
AAGCCCTTCGTTGGGGGATGTGAGTGTTTTCCTGACCACAATCATAATAGTATCAGCATA
TGCACTGCCTATAATGTAAGCTCGAGCACATAAAGAAGATCCTTTTATATTATGGGGTGC
TTGTGGACTAACGTTATCAGCAAAGACAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9273#0      --------ATAATATTCTAGGTCGCTAACTGGTCATAGCGCTACCTGGGATACAATGACG 52
consensus_9273#1      CGGGTTTTATAATATTCTAGGTCGTTAACTGGTCATAGCGCTACCTGGGATACAATGACG 60
consensus_9273#2      ------------------------------------------------------------
                                                                                  

consensus_9273#0      GGGATTAGGACCGTAATTCTTGTTTCATTAGCTGGATCCGTTTCTTTCACATTCTTACTC 112
consensus_9273#1      GGGATTAGGACCGTAATTCTTGTTTCACTAGCTGGATCCGTTTCTTTCACATTCTTACTC 120
consensus_9273#2      -------------------TTGTTTCACTAGCTGGATCCGTTTCTTTCACAGTCTTACTC 41
                                         ******** *********************** ********

consensus_9273#0      TTAGCCTGCGCGCTACCGCAATACAAGTAACATAATTAATTGGGAGTTTAATCGTGTTTA 172
consensus_9273#1      TTAGCCTGCGCGCTACCGCAATACAA---------------------------------- 146
consensus_9273#2      ATAGCCGGCGCGCTACCGCAATACAAGTAACATAATTAATTGGGAGTTTAATCGTGTTTA 101
                       ***** *******************                                  

consensus_9273#0      GTGTTTGGTGGCCACTATTCATGCTGATATTTTACATAATAGCACCAATTCCATTGTTGG 232
consensus_9273#1      -TGTTTGGTGGCCACTATTCATGCTGATATTTTACATAATAGCACCAATTCCATTGTTGG 205
consensus_9273#2      GTGTTTGGTGGCCACTATTCACGCTGATATTTTACATAATAGCACCAATTCCATTGTTGG 161
                       ******************** **************************************

consensus_9273#0      TTGCTAAAAATTTCCAGGAAAGCCCTTCGTTGGGGGATGTGAGTGTTTTCCTGACCACAA 292
consensus_9273#1      TTGCTAAAAATTTCCAGGAAAGCCCTTCGTTGGGGGATGTGAGTGTTTTCCTGACCACAA 265
consensus_9273#2      TTGCTAAAAATTTCCAGGAAAGCCCTTCGTTGGGGGATGTGAGTGTTTTCCTGACCACAA 221
                      ************************************************************

consensus_9273#0      TCATAATAGTATCAGCATATGCACTGCCTATATTGTTTGCTCGAGCACTTAAAGAAAATC 352
consensus_9273#1      TCATAATAGTATCAGCATATGCACTGCCTATATTGTTTGCTCGAGCACCTAAAGAAAATC 325
consensus_9273#2      TCATAATAGTATCAGCATATGCACTGCCTATAATGTAAGCTCGAGCACATAAAGAAGATC 281
                      ******************************** ***  ********** ******* ***

consensus_9273#0      CTCTATATATTTTCAAAGCAAAGAGTTATTCGCTTCTTGTAGATATTATGGGGTGCTTGT 412
consensus_9273#1      CTCTT-------------------------------------ATATTATGGGGTGCTTGT 348
consensus_9273#2      CTTTT-------------------------------------ATATTATGGGGTGCTTGT 304
                      ** *                                      ******************

consensus_9273#0      GGACTTACGTTATCAGCAAATACACTTATGTTTGCAACCATCTTTTTCCTAGTTTATCTG 472
consensus_9273#1      GGACTTACGTTATCAGCAAATACACTTATGTTTGCAACCATCTTTTTC------------ 396
consensus_9273#2      GGACTAACGTTATCAGCAAAGACAC----------------------------------- 329
                      ***** ************** ****                                   

consensus_9273#0      GTAGTCAAGTCTGATGATTTCGACAGTGGATTTTGATTTCGAACAGTAAATATCTCCCAA 532
consensus_9273#1      ------------------------------------------------------------
consensus_9273#2      ------------------------------------------------------------
                                                                                  

consensus_9273#0      ATTTTGATTCAATTTTAATGTAGTAACTGTATTATCTTCTGGAA 576
consensus_9273#1      --------------------------------------------
consensus_9273#2      --------------------------------------------