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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9282#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 718 fasta sequence
[TATTTACTGACTTTTTATGAGTAATATGAAGGGATATTTAATCGATCGAAGTCGTTATGGTGGTGGTGGAACGGCAGAAGTAGTAGAAGTAAAAATTGATCCAGATAGTTTAATTTCTTGACTTGGAGCAAATGTTAAATAGGATGCATTCATAATGTCCTGCTGTGAATTATAATGTTGAGATGTAGTCGTCATCGTCGTGGTGGCGCTACTACCACTACTATTACTACTACTGGAAGGGAATTTTTCATGAATACAGTGCGCTAAATTAGCGGAAGGAGACTGTTTATCATTATTCATGGAGACAG-ACTGACGAGAAAAAGATACTGTATTTGTATGGGAACTAGTAACAGGAGTATTAGTGACGACTGGGGTAGTAGTAATAGTAGAAGCAATAGTACTACTAATACTACTAACAATTACATTGGTTGTTGTCGTTATTATTGAACAAGTTGTAAGTGGTGGATTGACAGTTGAAGTGATTGTAGGAG-AGCTACTGTTACCAGTCTGTTGTTTCTGTTGTCCTATAACATTGTAAGGATATCAAAGAAACCAATCAGGATAGCATCCATATTTACTGACTTTTTATGAGTAATATGAAGGGATATTTAATCGATCGAAGTCGTTATGGTGGTGGTGGAACGGCAGAAGTAGTAGAAGTAAAAATTGATCCAGATAGTTTAATTTCTTGACTTGGAGCAAATGTTAAATAGGATGC]
[+] EMBL CD129481 [TATTTACTGACTTTTTATGAGTAATATGAAGGGATATTTAATCGATCGAAGTCGTTATGGTGGTGGTGGAACGGCAGAAGTAGTAGAAGT AAAATTGATCCAGATAGTTTAATTTCTTGACTTGGAGCAAATGTTAAATAGGATGCATTCATAATGTCCTGCTGTGAATTATAATGTTGAGATGTAGTCGTCATCGTCGTGGTGGCGCTACTACCACTACTATTACTACTACTGGAAGGGAATTTTTCATGAATACAGTGCGCTAAATTAGCGGAAGGAGACTGTTTATCATTATTCATGGAGACAG ACTGACGAGAAAAAGATACTGTATTTGTATGGGAACTAGTAACAGGAGTATTAGTGACGACTGGGGTAGTAGTAATAGTAGAAGCAATAGTACTACTAATACTACTAACAATTACATTGGTTGTTGTCGTTATTATTGAACAAGTTGTAAGTGGTGGATTGACAG ]
[-] EMBL CD066894 [ GTAAAAATTGATCCAAATAGTTTATTTTTTTGCCTTGGAGCTAATGTTATATAGGATGCATTCATAATGTCCTGCTGCGAATTATAATGTTGAGATGTAGTCGTCATCGTCGTGGGGGCGCTCCTACCACTACTATTACTATTACTGCCAGGGAATTTTTCATGAATACAGTGCGCTAAATTAGCGGAAGGAGACCGTTTATCATTATTCATGGAGACAGTACTGCCGAGAAAAAGATACTGTATTTGTATGGGAACTAGTACCAGGAGTATTAGTGACGACTGGGGTAGTAGTAATAGTAGAAGCAATAGTACTACTAATACTACTAACAATTACATTGGTTGTTGTCGTTATTATTGAACAAGTTGTAAGTGGTGGATTGACAGTTGAAGTGATTGTAGGAG AGCTACTGTTACCA ]
[+] EMBL CD066958 [ GTAAAAATTGATCCAGATAGTTTAATTTCTTGACTTGTAGCAAATGTTAAATAAGATGCATTCATAATGTCCTGCTGTGAATTATAATGTTGAGATGTACTCGTCATCGTCGTGGTGGCGCTACTACCACTACTATTACTACTACTGGAAGGGAATTTTTCATGAATACAGTGCGCTAAATTAGCGGAAGGAGACCGTTT ]
[+] EMBL CD129493 [ AAAATTGATCCAGATAGTTTAATTTCTTGACTTGGAGCAAATGTTAAATAGGATGCATTCATAATGTCCTGCTGTGAATTATAATGTTGAGATGTAGTCGTCATCGTCGTGGTGGCGCTACTACCACTACTATTACTACTACTGGAAGGGAATTTTTCATGAATACAGTGCGCTAAATTAGCGGAAGGAGACTGTTTATCATTATTCATGGAGACAG ACTGACGAGAAAAAGATACTGTATTTGTATGGGAACTAGTAACAGGAGTATTAGTGACGACTGGGGTAGTAGTAATAGTAGAAGCAATAGTACTACTAATACTACTAACAATTACATTGGTTGTTGTCGTTATTATTGAACAAGTTGTAAGTGGTGGATTGATAGTTGAAGTGATTGTAGGAG AGCTACTGTTACC ]
[+] EMBL CD168052 [ TCATAATGTCCTGCTGTGAATTATACTGTTGAGATGTAGTCGTCATCGTCGTGGTGGCGCTACTACCACTACTATTACTACTACTGGAAGGGAATTTTTCATGAATACAGTGCGCTAAATTAGCGGAAGGAGACTGTTTATCATTATTCATGGAGACAG ACTGACGAGAAAAAGATACTGTATTTGTATGGGAACTAGTAACAGGAGTATTAGTGACGACTGGGGTAGTAGTAATAGTAGAAGCAATAGTACTACTAATACTACTAACAATTACATTGGTTGTTGTCGTTATTATTGAACAAGTTGTAAGTGGTGGATTGACAGTTGAAGTGATTGTAGGAG AGCTACTGTTACC ]
[-] EMBL CD167931 [ CATAATGTCCTGCTGTGAATTATAATGTTGAGATGTAGTCGTCATCGTCGTGGTGGCGCTACTACCACTACTATTACTACTACTGGAAGGGAATTTTTCATGAATACAGTGCGCTAAATTAGCGGAAGGAGACTGTTTATCATTATTCATGGAGACAG ACTGACGAGAAAAAGATACTGTATTTGTATGGGAACTAGTAACAGGAGTATTAGTGACGACTGGGGTAGTAGTAATAGTAGAAGCAATAGTACTACTAATACTACTAACAATTACATTGGTTGTTGTCGTTATTATTGAACAAGTTGTAAGTGGTGGATTGACAGTTGAAGTGATTGTAGGAGAAGCTACTGCTACCAGT ]
[-] EMBL CD129453 [ AAAGATACTGTATTTGTATGGGAACTAGTAACAGGAGTATTAGTGACGACTGGGGTAGTAGTAATAGTAGAAGCAATAGTACTACTAATACTACTAACAATTACATTGGTTGTTGTCGTTATTATTGAACAAGTTGTAAGTGGTGGATTGACAGTTGAAGTGATTGTAGGAG AGCTACTGTTACCA ]
[+] EMBL CD095835 [ ACTGTATTTGTATGGGAACTAGTAACAGGAGTATTAGTGACGACTGGGGTAGTAGTAATAGTAGAAGCAATAGTACTACTAATACTACTAACAATTACATTGGTTGTTGTCGTTATTATTGAACAAGTTGTAAGTGGTGGATTGACAGTTGAAGTGATTGTAGGAG AGCTACTGTTACCAGTCTGTTGTTTCTGTTGTCCTATAACATTGTAAGGATATCAAAGAAACCAATCAGGATAGCATCCATATTTACTGACTTTTTATGAGTAATATGAAGGGATATTTAATCGATCGAAGTCGTTATGGTGGTGGTGGAACGGCAGAAGTAGTAGAAGTAAAAATTGATCCAGATAGTTTAATTTCTTGACTTGGAGCAAATGTTAAATAGGATGC]
consensusID : consensus_9282#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 388 fasta sequence
[CTCGGTACCCTGGCATGTGGAAATAGGATGCATTCATAATGTCCTGCTGTGAATTATAATGTTGAGATGTAGTCGTCATCGTCGTGGTGGCGCTACTGCCACTACTATTACTACTACTGGAAGGGAATTTTTCATGAATACAGTGCGCTAAATTAGCGGAAGGAGACTGTTTATCATTATTCATGGAGACAGACTGACGAGAAAAAGATACTGTATTTGTATGGGAACTAGTAACAGGAGTATTAGTGACGACTGGGGTAGTAGTAATAGTAGAAGCAATAGTACTACTAATACTACTAACAATTACATTGGTTGTTGTCGTTATTATTGAACAAGTTGTAAGTGGTGGATTGACAGTTGAAGTGATTGTAGGAGAGCTACTGTTACC]
[+] EMBL CD129549 [CTCGGTACCCTGGCATGTGGAAATAGGATGCATTCATAATGTCCTGCTGTGAATTATAATGTTGAGATGTAGTCGTCATCGTCGTGGTGGCGCTACTGCCACTACTATTACTACTACTGGAAGGGAATTTTTCATGAATACAGTGCGCTAAATTAGCGGAAGGAGACTGTTTATCATTATTCATGGAGACAGACTGACGAGAAAAAGATACTGTATTTGTATGGGAACTAGTAACAGGAGTATTAGTGACGACTGGGGTAGTAGTAATAGTAGAAGCAATAGTACTACTAATACTACTAACAATTACATTGGTTGTTGTCGTTATTATTGAACAAGTTGTAAGTGGTGGATTGACAGTTGAAGTGATTGTAGGAGAGCTACTGTTACC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9282#0 TATTTACTGACTTTTTATGAGTAATATGAAGGGATATTTAATCGATCGAAGTCGTTATGG 60
consensus_9282#1 ------------------------------------------------------------
consensus_9282#0 TGGTGGTGGAACGGCAGAAGTAGTAGAAGTAAAAATTGATCCAGATAGTTTAATTTCTTG 120
consensus_9282#1 ------------------------------------------------CTCGGTACCCTG 12
* * * **
consensus_9282#0 ACTTGGAGCAAATGTTAAATAGGATGCATTCATAATGTCCTGCTGTGAATTATAATGTTG 180
consensus_9282#1 GCATGTGG--------AAATAGGATGCATTCATAATGTCCTGCTGTGAATTATAATGTTG 64
* ** * ********************************************
consensus_9282#0 AGATGTAGTCGTCATCGTCGTGGTGGCGCTACTACCACTACTATTACTACTACTGGAAGG 240
consensus_9282#1 AGATGTAGTCGTCATCGTCGTGGTGGCGCTACTGCCACTACTATTACTACTACTGGAAGG 124
********************************* **************************
consensus_9282#0 GAATTTTTCATGAATACAGTGCGCTAAATTAGCGGAAGGAGACTGTTTATCATTATTCAT 300
consensus_9282#1 GAATTTTTCATGAATACAGTGCGCTAAATTAGCGGAAGGAGACTGTTTATCATTATTCAT 184
************************************************************
consensus_9282#0 GGAGACAGACTGACGAGAAAAAGATACTGTATTTGTATGGGAACTAGTAACAGGAGTATT 360
consensus_9282#1 GGAGACAGACTGACGAGAAAAAGATACTGTATTTGTATGGGAACTAGTAACAGGAGTATT 244
************************************************************
consensus_9282#0 AGTGACGACTGGGGTAGTAGTAATAGTAGAAGCAATAGTACTACTAATACTACTAACAAT 420
consensus_9282#1 AGTGACGACTGGGGTAGTAGTAATAGTAGAAGCAATAGTACTACTAATACTACTAACAAT 304
************************************************************
consensus_9282#0 TACATTGGTTGTTGTCGTTATTATTGAACAAGTTGTAAGTGGTGGATTGACAGTTGAAGT 480
consensus_9282#1 TACATTGGTTGTTGTCGTTATTATTGAACAAGTTGTAAGTGGTGGATTGACAGTTGAAGT 364
************************************************************
consensus_9282#0 GATTGTAGGAGAGCTACTGTTACCAGTCTGTTGTTTCTGTTGTCCTATAACATTGTAAGG 540
consensus_9282#1 GATTGTAGGAGAGCTACTGTTACC------------------------------------ 388
************************
consensus_9282#0 ATATCAAAGAAACCAATCAGGATAGCATCCATATTTACTGACTTTTTATGAGTAATATGA 600
consensus_9282#1 ------------------------------------------------------------
consensus_9282#0 AGGGATATTTAATCGATCGAAGTCGTTATGGTGGTGGTGGAACGGCAGAAGTAGTAGAAG 660
consensus_9282#1 ------------------------------------------------------------
consensus_9282#0 TAAAAATTGATCCAGATAGTTTAATTTCTTGACTTGGAGCAAATGTTAAATAGGATGC 718
consensus_9282#1 ----------------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||