cluster # 9291

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Schistosoma mansoni
cluster # 9291 cluster # 9291 Sequences # 9 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9291#0 length = 789 sequences # 8

consensus_9291#1 length = 506 sequences # 1

consensusID : consensus_9291#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 789
fasta sequence

                              [AGATTTTGTGAGCGATTTACATTTACATCGGAATTTTTTCCGCCGGTTGCGAATTTTGATTTGAACTAATTGTGGATGGGTTTGTTGGGCGAGAGGAAGTAGTACACCATAGTTCGATTACGCACTAAAGAGCTTGCTGGTTGATTGATCGGGCACAGAACGAGCAGGACCAGAGTTTGATGACTGGCGACGATTTGCTGGAGGTATAAGGCTATCAGTTGCAGAAACAAGTGAGACTAAATTCTGTCCTCTAGCTCCAGCAGGCAA-AG-AGTTCGAGTTAAAATTATGATTACCAGTATTACCTAACACTCCATCCAAACGAGTACGTTTGGCAGCAAG-AGAGTTAGTTGTTGAGGACGCAGTTGTTGTAGCGTTCGATAATCTGGTATATTTATTGCGTATATTACCCGCTGTAACTGCTGTTTGGGCACTAGAAACGTTTAAAGCAGACAATGAGGGGGTATGGAACACTGAATTTGCCGCAGCAGCAAAATTAACGAGGTTGGGCTGGCCCATAATACCTTCCAAACCAAACTGCTGCAGTGACAGAACCGAATTTCCAGTTATACTGCTAAGGGCTTGAGCTTGTAAAGCAAGTTCTGAAAGG-TTAGTGC-TTGTCAAGGGG-TTCCAGGACGGAAGCGACGAACCAATATTCGATCTCCCTCGCTTACGGTTTTTCGGTTCGGATGCTATGGTTACATCTAAAACCATATTGTAATAGGTTTTTGAATCTTCACCAATAACTGCGGCTCGTGCATTAATCTCGTTTGCGTATTGAATGAATGCATA]

[+] EMBL CD178469             [AGATTTTGTGAGCGATTTACATTTACATCGGAATTTTTTCCGCCGGTTGCGAATTTTGATTTGAACTAATTGTGGATGGGTTTGTTGGGCGAGAGGAAGTAGTACACCATAGTTCGATTACGCACTAAAGAGCTTGCTGGTTGATTGATCGGGCACAGAACGAGCAGGACCAGAGTTTGATGACTGGCGACGATTTGCTGGAGGTATAAGGCTATCAGTTGCAGAAACAAGTGAGACTAAATTCTGTCCTCTAGCTCCAGCAGGCAA AG AGTTCGAGTTAAAATTATGATTACCAGTATTACCTAACACTCCATCCAAACGAGTACGTTTGGCAGCAAG AGAGTTAGTTGTTGAGGACGCAGTTGTTGTAGCGTTCGATAATCTGGTATATTTATTGCGTATATTACCCGCTGTAACTGCTGTTTGGGCACTAGAAACGTTTAAAGCAGACAATGAGGGGGTATGGAACACTGAATTTGCCGCAGCAGCAAAATTAACGAGGTTGGGCTG                                                                                                                                                                                                                                                                                          ]
[+] EMBL CD194850             [                                                                                                                                                                                         GGCGACGATTTGCTGGAGGTATAAGGCTATCAGTTGCAGAAACAAGTGAGACTAAATTCTGTCCTCTAGCTCCAGCAGGCAA AG AGTTCGAGTTAAAATTATGATTACCAGTATTACCTAACACTCCATCCAAACGAGTACGTTTGGCAGCAAG AGAGTTAGTTGTTGAGGACGCAGTTGTTGTAGCGTTCGATAATCTGGTATATTTATTGCGTATATTACCCGCTGTAACTGCTGTTTGGGCACTAGAAACGTTTAAAGCAGACAATGAGGGGGTATGGAACACTGAATTTGCCGCAGCAGCAAAATTAACGAGGTTGGGCTGGCCCATAATACCTTCCAAACCAAACTGCTGCAGTGACAGAACCGAATTTCCAGTTATACTGCTAAGGGCTTGAGCTTGTAAAGCAAGTTCTGAAAGG TTAGTGC TTGTCAAGGGG TTCCAGGACGGAAGCGACGAACCAATATTCGATCTCCCTCGCTTACGGTTTTTCGGTTCGGATGCTATGGTTACATCTAAAACCATATTGTAATAGGTTTTTGAATCTTCACCAATAACTGCGGCTCGTGCATTAATCTCGTTTGCGTATTGAATGAATGCATA]
[+] EMBL CD164629             [                                                                                                                                                                                                                                    acacGAGACTAAATTCTGTCCTCTAGCTCCAGCAGGCAA AG AGTTCGAGTTAAAATTATGATTACCAGTATTACCTAACACTCCATCCAAACGAGTACGTTTGGCAGCAAG AGAGTTAGTTGTTGAGGACGCAGTTGTTGTAGCGTTCGATAATCTGGTATATTTATTGCGTGTATTACCCGCTGTAACTGCTGTTTGGGCACTAGAAACGTTTAGAGCAGACAATGAGGGGGTATGGAACACTGAATTTGCCGCAGCAGCAAAATTAACGAGGTTGGGCTGGCCCATAATACCTTCCAAACCAAACTGCTGCAGTGACAGAACCGAATTTCCAGTTATACTGCTAAGGGCTTGAGCTTGTAAAGCAAGTTCTGAAAGG TTAGTGC TTGTCAAGGGG TTCCAGGACGGAAGCGACGAACCAATATTCGATCTCCCTCGCTTACGGTTTTTCGGTTCGGATGCTATGGTTACATCTAAAACCATATTGTAATAGGTTTTTGAATCTTCAC                                                    ]
[+] EMBL CD164546             [                                                                                                                                                                                                                                                      TCCTCTAGCTCCAGCAGGCAA AG AGTTCGAGTTAAAATTATGATTACCAGTATTACCTAACACTCCATCCAAACGAGTACGTTTGGCAGCAAGAAGAGTTAGTTGTTGTGGACGCAGTTGTTGTAGCGTTCGATAATCTGGTATATTTATTGCGTATATTACCCGCTGTAACTGCTGTTTGGGCACTAGAAACGTTTAAAGCAGACAATGAGGGGGTATGGAACACTGAATTTGCCGCAGCAGCAAAATTAACGAGGTTGGGCTGGCCCATAATACCTTCCAAACCAAACTGCTGCAGTGACAGAACCGAATTTCCAGTTATACTGCTAAGGGCTTGAGCTTGTAAAGCAAGTTCTGAAAGGTTTAGTGCTTTGTCAAGGGGTTTCCAGGACGGAAGCGACGAACCAATATTCGATCTCCCTCGCTTACGGTTTTTCGGTTCGGATGCTATGGTTACATCTAAAACCATATTG AATACGTTTTTGAATCTTaa                                                     ]
[+] EMBL CD164593             [                                                                                                                                                                                                                                                      TCCTCTAGCTCCAGCAGGCAA AG AGTTCGAGTTAAAATTATGATTACCAGTATTACCTAACACTCCATCCAAACGAGTACGTTTGGCAGCAAG AGAGTTAGTTGTTGAGGACGCAGTTGTTGTAGCGTTCGATAATCTGGTATATTTATTGCGTATATTACCCGCTGCAACTGCTGTTTGGGCACTAGAAACGTTTAAAGCAGACAATGAGGGGGTATGGAACACTGAATTTGCCGCAGCAGCAAAATTAACGAGGTTGGGCTGGCCCATAATACCTTCCAAACCAAACTGCTGCAGTGACAGAACCGAATTTCCAGTTATACTGCTAAGGGCTTGAGCTTGTAAAGCAAGTTCTGAAAGG TTAGTGC TTGTCAAGGGG TTCCAGGACGGAAGCGACGAACCAATATTCGATCTCCCTCGCTTACGGGTTTTCGGTTCGGATGCTATGGTTACATCTNAAACCATATTGGAATAGGTTTTTGAATCTTCc                                                     ]
[+] EMBL CD164561             [                                                                                                                                                                                                                                                      TCCTCTAGCTCCAGCAAGAAACAGAAACTCGCGCTGCAAGGATGATTACCAAGCTTACCTAACACTCCATCCAAACGAGTACGTTTGGCAGCAAG AGAGTTAGTTGTTGAGGACGCAGTTGTTGTAGCGTTCGATAATCTGGTATATTTATTGCGTATATTACCCGCTGTAACTGCTGTTTGGGCACTAGAAACGTTTAAAGCAGACAATGAGGGGGTATGGAACACTGAATTTGCCGCAGCAGCAAAATTAACGAGGTTGGGCTGGCCCATAGTACCTTGCAAACCAAACTGCTGCAGTGACAGAACCGAATTTCCAGTTATACTGCTAAAGGCTTGAGCTTGTAAAGCAAGTTCTGAAAGG TTAGTGC TTGTCAAGGGG TTCCAGGACGGAAGCGACG                                                                                                                                                 ]
[+] EMBL CD125250             [                                                                                                                                                                                                                                                      TCCTCTAGCTCCAGCAGGCAA AG AGTTCGAGTTAAAATTATGATTACCAGTATTACCTAACACTCCATCCAAACGAGTACGTTTGGCAGCAAG AGAGTTAGTTGTTGAGGACGCAGTTGTTGTAGCGTTCGATAATCTGGTATATTTATTGCGTATATTACCCGCTGTAACTGCTGTTTGGGCACTAGAAACGTTTAAAGCAGACAATGAGGGGGTATGGAACACTGAATTTGCCGCAGCAGCAAAATTAACGAGGGTGGGCTGGCCCATAATACCTTCCAAACCAAACTGCTGCAGTGA                                                                                                                                                                                                                                                      ]
[-] EMBL CD125553             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CCGAATTTCCAGTTATACTGCTAAGGGCTTGAGCTTGTAAAGCAAGTTCTGAAAGG TTAGTGC TTGTCAAGGGG TTCCAGGACGGAAGCGACGAACCAATATTCGATCTCCCTCGCTTACGGTTTTTCGGTTCGGATGCTATGGTTACATCTAAAACCATATTGTAATAGGTTTTTGAATCTTCACCAATAACTGCGGCTCGTGCATTAGTCTCGTTTGCGTATT             ]




>consensus_9291#0
AGATTTTGTGAGCGATTTACATTTACATCGGAATTTTTTCCGCCGGTTGCGAATTTTGAT
TTGAACTAATTGTGGATGGGTTTGTTGGGCGAGAGGAAGTAGTACACCATAGTTCGATTA
CGCACTAAAGAGCTTGCTGGTTGATTGATCGGGCACAGAACGAGCAGGACCAGAGTTTGA
TGACTGGCGACGATTTGCTGGAGGTATAAGGCTATCAGTTGCAGAAACAAGTGAGACTAA
ATTCTGTCCTCTAGCTCCAGCAGGCAAAGAGTTCGAGTTAAAATTATGATTACCAGTATT
ACCTAACACTCCATCCAAACGAGTACGTTTGGCAGCAAGAGAGTTAGTTGTTGAGGACGC
AGTTGTTGTAGCGTTCGATAATCTGGTATATTTATTGCGTATATTACCCGCTGTAACTGC
TGTTTGGGCACTAGAAACGTTTAAAGCAGACAATGAGGGGGTATGGAACACTGAATTTGC
CGCAGCAGCAAAATTAACGAGGTTGGGCTGGCCCATAATACCTTCCAAACCAAACTGCTG
CAGTGACAGAACCGAATTTCCAGTTATACTGCTAAGGGCTTGAGCTTGTAAAGCAAGTTC
TGAAAGGTTAGTGCTTGTCAAGGGGTTCCAGGACGGAAGCGACGAACCAATATTCGATCT
CCCTCGCTTACGGTTTTTCGGTTCGGATGCTATGGTTACATCTAAAACCATATTGTAATA
GGTTTTTGAATCTTCACCAATAACTGCGGCTCGTGCATTAATCTCGTTTGCGTATTGAAT
GAATGCATA

consensusID : consensus_9291#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 506
fasta sequence

                              [CTAAATTCTGTGCTCTAGCTCCAGCGGGGGGAGAGTTCGAGTTAAAATTATGATTACCAGTATTACCTAACACTCCATCCAAACGAGCACGTTTGGCAGCAAGAGAGTTAGTTGTTGAGGACGCAGTTGTTGTAGCGTTCGATAATCTGGTATATTTATTGCGTATATTACCCGCTGCAACTGCTGGTTGGGCACTAAAAACGTATAAAGCAAACAATGAGGGGGTATGGAACACTGAATTTGCCGCAGCAACAAAATTAACGAGGTTGGGCTGGCCCATATACCTTTCAAACCAAACTGGTGGAGTGACAGAACCCAATTTCCACTTATCGTGCTAAGGGTTTGCTCTTGAAAAACAAGTTCTGAAAGTGGTAGCGCTTGTAAAGGTGTTCCAGGACGGAACCCACAAACCAATATTCGATCTCTCCCCGTTACCGGTTTTCGGTTCGGATGCTAGGGTCACTTATAAAAACATATGGCAAAAGGTTTTTAGAATCTTCACAAAA]

[+] EMBL CD164557             [CTAAATTCTGTGCTCTAGCTCCAGCGGGGGGAGAGTTCGAGTTAAAATTATGATTACCAGTATTACCTAACACTCCATCCAAACGAGCACGTTTGGCAGCAAGAGAGTTAGTTGTTGAGGACGCAGTTGTTGTAGCGTTCGATAATCTGGTATATTTATTGCGTATATTACCCGCTGCAACTGCTGGTTGGGCACTAAAAACGTATAAAGCAAACAATGAGGGGGTATGGAACACTGAATTTGCCGCAGCAACAAAATTAACGAGGTTGGGCTGGCCCATATACCTTTCAAACCAAACTGGTGGAGTGACAGAACCCAATTTCCACTTATCGTGCTAAGGGTTTGCTCTTGAAAAACAAGTTCTGAAAGTGGTAGCGCTTGTAAAGGTGTTCCAGGACGGAACCCACAAACCAATATTCGATCTCTCCCCGTTACCGGTTTTCGGTTCGGATGCTAGGGTCACTTATAAAAACATATGGCAAAAGGTTTTTAGAATCTTCACAAAA]




>consensus_9291#1
CTAAATTCTGTGCTCTAGCTCCAGCGGGGGGAGAGTTCGAGTTAAAATTATGATTACCAG
TATTACCTAACACTCCATCCAAACGAGCACGTTTGGCAGCAAGAGAGTTAGTTGTTGAGG
ACGCAGTTGTTGTAGCGTTCGATAATCTGGTATATTTATTGCGTATATTACCCGCTGCAA
CTGCTGGTTGGGCACTAAAAACGTATAAAGCAAACAATGAGGGGGTATGGAACACTGAAT
TTGCCGCAGCAACAAAATTAACGAGGTTGGGCTGGCCCATATACCTTTCAAACCAAACTG
GTGGAGTGACAGAACCCAATTTCCACTTATCGTGCTAAGGGTTTGCTCTTGAAAAACAAG
TTCTGAAAGTGGTAGCGCTTGTAAAGGTGTTCCAGGACGGAACCCACAAACCAATATTCG
ATCTCTCCCCGTTACCGGTTTTCGGTTCGGATGCTAGGGTCACTTATAAAAACATATGGC
AAAAGGTTTTTAGAATCTTCACAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9291#0      AGATTTTGTGAGCGATTTACATTTACATCGGAATTTTTTCCGCCGGTTGCGAATTTTGAT 60
consensus_9291#1      ------------------------------------------------------------
                                                                                  

consensus_9291#0      TTGAACTAATTGTGGATGGGTTTGTTGGGCGAGAGGAAGTAGTACACCATAGTTCGATTA 120
consensus_9291#1      ------------------------------------------------------------
                                                                                  

consensus_9291#0      CGCACTAAAGAGCTTGCTGGTTGATTGATCGGGCACAGAACGAGCAGGACCAGAGTTTGA 180
consensus_9291#1      ------------------------------------------------------------
                                                                                  

consensus_9291#0      TGACTGGCGACGATTTGCTGGAGGTATAAGGCTATCAGTTGCAGAAACAAGTGAGACTAA 240
consensus_9291#1      --------------------------------------------------------CTAA 4
                                                                              ****

consensus_9291#0      ATTCTGTCCTCTAGCTCCAGCAGGCAAAGAGTTCGAGTTAAAATTATGATTACCAGTATT 300
consensus_9291#1      ATTCTGTGCTCTAGCTCCAGCGGGGGGAGAGTTCGAGTTAAAATTATGATTACCAGTATT 64
                      ******* ************* **   *********************************

consensus_9291#0      ACCTAACACTCCATCCAAACGAGTACGTTTGGCAGCAAGAGAGTTAGTTGTTGAGGACGC 360
consensus_9291#1      ACCTAACACTCCATCCAAACGAGCACGTTTGGCAGCAAGAGAGTTAGTTGTTGAGGACGC 124
                      *********************** ************************************

consensus_9291#0      AGTTGTTGTAGCGTTCGATAATCTGGTATATTTATTGCGTATATTACCCGCTGTAACTGC 420
consensus_9291#1      AGTTGTTGTAGCGTTCGATAATCTGGTATATTTATTGCGTATATTACCCGCTGCAACTGC 184
                      ***************************************************** ******

consensus_9291#0      TGTTTGGGCACTAGAAACGTTTAAAGCAGACAATGAGGGGGTATGGAACACTGAATTTGC 480
consensus_9291#1      TGGTTGGGCACTAAAAACGTATAAAGCAAACAATGAGGGGGTATGGAACACTGAATTTGC 244
                      ** ********** ****** ******* *******************************

consensus_9291#0      CGCAGCAGCAAAATTAACGAGGTTGGGCTGGCCCATAATACCTTCCAAACCAAACTGCTG 540
consensus_9291#1      CGCAGCAACAAAATTAACGAGGTTGGGCTGGCCCATA-TACCTTTCAAACCAAACTGGTG 303
                      ******* ***************************** ****** ************ **

consensus_9291#0      CAGTGACAGAACCGAATTTCCAGTTATACTGCTAAGGGCTTGAGCTTGTAAAGCAAGTTC 600
consensus_9291#1      GAGTGACAGAACCCAATTTCCACTTATCGTGCTAAGGGTTTGCTCTTGAAAAACAAGTTC 363
                       ************ ******** ****  ********* ***  **** *** *******

consensus_9291#0      TGAAAG-GTTAGTGCTTGTCAAGGGGTTCCAGGACGGAAGCGACGAACCAATATTCGATC 659
consensus_9291#1      TGAAAGTGGTAGCGCTTGTAAAGGTGTTCCAGGACGGAACCCACAAACCAATATTCGATC 423
                      ****** * *** ****** **** ************** * ** ***************

consensus_9291#0      TCCCTCGCTTACGGTTTTTCGGTTCGGATGCTATGGTTACATCTAAAACCATATTGTAAT 719
consensus_9291#1      TCTCCCCGTTACCGGTTTTCGGTTCGGATGCTAGGGTCACTTATAAAAACATATGGCAAA 483
                      ** * *  **** * ****************** *** ** * ***** ***** * ** 

consensus_9291#0      AGGTTTTT-GAATCTTCACCAATAACTGCGGCTCGTGCATTAATCTCGTTTGCGTATTGA 778
consensus_9291#1      AGGTTTTTAGAATCTTCACAAAA------------------------------------- 506
                      ******** ********** **                                      

consensus_9291#0      ATGAATGCATA 789
consensus_9291#1      -----------