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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9306#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1306 fasta sequence
[ACGGGTATATCGAAGGGCTTCGGTTTTGTGGATTTCGCTTCTGTCCATGAAGCAAGACGTTGGATTGGACCACCAGCAAAGGTATATTTCGTGTTGCGACGCTATAGAAATACGACTGNATGTACANGCACTCCTTCGCAACCANGCTTGGATTCACNTGATACATTCATTCTGGAAGATGCCCCCGAGGTTACTTAGGTCCAGTCAAAGCTTTATAGACATCAGTCCTCCTGGCGTTGTCAAGAAAGTCTCCACCGGGAAGAACTGGANNTCTGTTCAAGGGTGGGTTCTAGTTCANNCAACTTCAGAAAGGGCGAAGATCAAGTAGCCCATAAATAGTTCCAGTTGGCCGGAGGTTTCTCCAAGTGGCAATCTTCTCAACAAAACTCCGGTCAGATNANGTGTTGATCTCATCGGTACAACTCCATGGTAATACTCTCGGTCTTGAGATGCTTGGATGCACTAACTACGGAAGATGACATTTGCCAGGTTTTTCAAGATACGGCCGACGTAAAGGTGCGACAGTGTCATGTCATGAGAGATGAAGTAACACATGCTCCCAGGTGCTTTGCTTTTGCGGAGCTTCCCACGGTTGCTGATGCTTACAAAGTCATGGATATAGTAAACAAAGAATTCAAGC-TT-TTTGAGGTCGGAGGAAAAGCAGTAACAGTCTCGTACGCAAAGAACACTTTCAATACTATTATGGCAACACTAAAAACGGAAGGATCATATAATGCCCAGTTAAACAGTAGTCGCAACTTGGCTCTGGATTTAGCGCATGCAGCTATGGCCGCACAAAATAATAACATATCACCTGATACTGTTGCAATGAATGCTGTTGCTGCATCAGCATTACTGAGTCAAACTTCAAACAATGGAGCTGCTGTTGCCCAGGCAGCGATACAACAAAAACAAACTGAACAACATGTTTTATCAGCTCTGACGAAATCTTTGCGTAACCATTCGGAACATACTGTCTCGTCTAACTATGCACCGTCTATGGCAGCACTCGTGGCATCTGGTCAGCAGCTCCCACCTCCTTCGTTCCCGTTCAATGCTGTGACGGCATCTACGACTACATATCCATTTCCAGACACATCTAAGTACATATACGATGAGTCTACTCGCTTTTACTATGATCCTGTCACTGGTCTAATGTATGAACCTAACTCAAAATACTTCTACGACCGCGGAAGTCAGCAATATTATTACTGGGATCAAACGAAGAGTACATATCTTCCTGTACCACAAACAAATCCTCAATCCAATTCCGTCGATAATGCGGCTTCCAACTCTCAAACCGATA]
[+] EMBL CD069598 [ACGGGTATATCGAAGGGCTTCGGTTTTGTGGATTTCGCTTCTGTCCATGAAGCAAGACGTTGGATTGGACCACCAGCAAAGGTATATTTCGTGTTGCGACGCTATAGAAATACGACTGNATGTACANGCACTCCTTCGCAACCANGCTTGGATTCACNTGATACATTCATTCTGGAAGATGCCCCCGAGGTTACTTAGGTCCAGTCAAAGCTTTATAGACATCAGTCCTCCTGGCGTTGTCAAGAAAGTCTCCACCGGGAAGAACTGGANNTCTGTTCAAGGGTGGGTTCTAGTTCANNCAACTTCAGAAAGGGCGAAGATCAAGTAGCCCATAAATAGTTCCAGTTGGCCGGAGGTTTCTCCAAGTGGCAATCTTCTCAACAAAACTCCGGTCAGATNANGTGTTGATCTCATCGGTACAACTCCATGGTAATACTCTCGGTCTTGAGATGCTTGGATGCACTAACTACGGAAGATGACATTTGCCAGGTTTTTCAAGATACGGCCGACGTAAAGGTGCGACAGTGTCATGTCATGAGAGATGAAGTAACACATGCTC ]
[+] EMBL CD116057 [ tCGGTC GAT GGTGTTGATCTCATCGGTACAACTCCAT GTAATACTCTC GTCTTGAGATGCTTGGATGCACTAACTACGGAAGATGACATTTGCCAGGTTTTTCAAGATACGGCCGACGTAAAGGTGCGACAGTGTCATGTAATGAGCGATGAAGTAACACATGCTTCCAGGTGCTTTGCTTTTGCGGAGCTTCCCACGGTTGCTGATGCTTACAAAGTCATGGATATAGTAAACAAAGAATTCAAGC TT TTTGAGGTCGGAGGAAAAGCAGTAACAGTCTCGTACGCAAAGAACACTTTCAATACTATTATGGCAACACTAAAAACGGAA ]
[+] EMBL CD069372 [ AAAGAATTCAAGCGTTGTTTGAGGTCGGAGGAAAAGCAGTAACAGTCTCGTACGCAAAGAACACTTTCAATACTATTATGGCAACACTAAAAACGGAAGGATCATATAATGCCCAGTTAAACAGTAGTCGCAACTTGGCTCTGGATTTAGCGCATGCAGCTATGGCCGCACAAAATAATAACATATCACCTGATACTGTTGCAATGAATGCTGTTGCTGCATCAGCATTACTGAGTCAAACTTCAAACAATGGAGCTGCTGTTGCCCAGGCAGCGATACAACAAAAACAAACTGAACAACATGTTTTATCAGCTCTGACGAAATCTTTGCGTAACCATTCGGAACATACTGTCTCGTCTAACTATGCACCGTCTATGGCAGCACTC ]
[-] EMBL CD180413 [ GTCTCGTACGCAAAGAACACTTTCAATACTATTATGGCAACACTAAAAACGGAAGGATCATATAATGCCCAGTTAAACAGTAGTCGCAACTTGGCTCTGGATTTAGCGCATGCAGCTATGGCCGCACAAAATAATAACATATCACCTGATACTGTTGCAATGAATGCTGTTGCTGCATCAGCATTACTGAGTCAAACTTCAAACAATGGAGCTGCTGTTGCCCAGGCAGCGATACAACAAAAACAAACTGAACAACATGTTTTATCAGCTCTGACGAAATCTTTGCGTAACCATTCGGAACATACTGTCTCGTCTAACTATGCACCGTCTATGGCAGCACTCGTGGCATCTGGTCAGCAGCTCCCAC ]
[+] EMBL CD116459 [ ACTGAGTCAAACTTCAAACAATGGAGCTGCTGTTGCCCAGGCAGCGATACAACAAAAACAAACTGAACAACATGTTTCATCAGCTCTGACGAAATCTTTGCGTAACCATTCGGAACATACTGTCTCGTCTAACTATGCACC ]
[-] EMBL CD089828 [ TGACGAAATCTTTGCGTAACCATTCGGAACATACTGTCTCGTCTAACTATGCACCGTCTATGGCAGCACTCGTGGCATCTGGTCAGCAGCTCCCACCTCCTTCGTTCCCGTTCAATGCTGTGACGGCATCTACGACTACATATCCATTTCCAGACACATCTAAGTACATATACGATGAGTCTACTCGCTTTTACTATGATCCTGTCACTGGTCTAATGTATGAACCTAACTCAAAATACTTCTACGACCGCGGAAGTCAGCAATATTATTACTGGGATCAAACGAAGAGTACATATCTTCCTGTACCACAAACAAATCCTCAATCCAATTCCGTCGATAATGCGGCTTCCAACTCTCAAACCGATA]
consensusID : consensus_9306#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 434 fasta sequence
[ATCGAAGGGCTTCGGTTTTGTGGATTTCGCTTCTGTCCATGAAGCAAGACGTTGGATGGACCACCAAAAAGGTATATTTCGTGTGCGACGCTATGAAATACGACTGATGTACAGCACTCCTCGCAACCAGCTTGATTCACTGATACATCATTCTGGATATGCCCCCGGGTTACTTGGTCCGTCAAGCTTTATGACTCGTCCTCCTGCGTTGTCAGAAGTCTCCACCGGAGACTGGATCTGTTCAAGGTGTTCTAGTCACAACTTCAGAAGGCGAGATCAGTGCTATAAATGTCAGTTGCCGAGGTCTCAAGTGCAATCTCTCACAAACTCGGTCGATGGTGTTGATCTCATCGGTACAACTCCATGTAATACTCTCGTCTTGAGATGCTTGGATGCACTAACTACGGAAGATGACATTTGCCAGGTTTTTCAAG]
[+] EMBL CD069388 [ATCGAAGGGCTTCGGTTTTGTGGATTTCGCTTCTGTCCATGAAGCAAGACGTTGGATGGACCACCAAAAAGGTATATTTCGTGTGCGACGCTATGAAATACGACTGATGTACAGCACTCCTCGCAACCAGCTTGATTCACTGATACATCATTCTGGATATGCCCCCGGGTTACTTGGTCCGTCAAGCTTTATGACTCGTCCTCCTGCGTTGTCAGAAGTCTCCACCGGAGACTGGATCTGTTCAAGGTGTTCTAGTCACAACTTCAGAAGGCGAGATCAGTGCTATAAATGTCAGTTGCCGAGGTCTCAAGTGCAATCTCTCACAAACTCGGTCGATGGTGTTGATCTCATCGGTACAACTCCATGTAATACTCTCGTCTTGAGATGCTTGGATGCACTAACTACGGAAGATGACATTTGCCAGGTTTTTCAAG]
consensusID : consensus_9306#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 388 fasta sequence
[GATCCCCTCATAGGTGCGCAGGAGGACGAGTCATAAAGCTTGACGGACCAAGTAATCTGGTGGCATCTCCAGAATGATGTATCAATGAGTCAAGCTGGTTGCGAGGAGTGCTGTACATCAGTCGTATTTCATAGCGTCGCACACGAAATATACCCTAAATAAAGAGGAAAACACATTTATATAAGGCTCTTTCATACACACTAGGCCCATGATTCCAAACTATACGACAATTACGAGGTGAAGATAAGCATGTTTAGGAAACTTGACAAAGATAACCTGTACTGTGAATGCATTACTTTTTGGTGGGCCATCCAACGTCTTGCTTCATGGACAGAAGCGAAATCCACAAAACCGAAGCCCTTCGATATACCTGCGAACCTATGAGGGT]
[+] EMBL CD060803 [GATCCCCTCATAGGTGCGCAGGAGGACGAGTCATAAAGCTTGACGGACCAAGTAATCTGGTGGCATCTCCAGAATGATGTATCAATGAGTCAAGCTGGTTGCGAGGAGTGCTGTACATCAGTCGTATTTCATAGCGTCGCACACGAAATATACCCTAAATAAAGAGGAAAACACATTTATATAAGGCTCTTTCATACACACTAGGCCCATGATTCCAAACTATACGACAATTACGAGGTGAAGATAAGCATGTTTAGGAAACTTGACAAAGATAACCTGTACTGTGAATGCATTACTTTTTGGTGGGCCATCCAACGTCTTGCTTCATGGACAGAAGCGAAATCCACAAAACCGAAGCCCTTCGATATACCTGCGAACCTATGAGGGT]
[+] EMBL CD061048 [ CGCAGGAGGACGAGTCATAAAGCTTGACGGACCAAGTAACCCGGGGGCATCTTCAGAATGATGTATCAATGAATGAAGCTGGTTGCGAGGAGTGCTGTACATCAATCGTATTTCATAGCGTCGCACACGAAATATACCCTAAATGAAGAGGAAAACACATTTATATAAGGCTCTTTCATACAGACTAGGCCCATGATTCCAAACTATACGACAATTACGAGGTGAAAATAAGCATGTTTATGAAACTTGACAAAGATAACCTGTACTGTGAATGCATTACTTTTTGGTGGGCCATCCAACGTCTTGCTTCATGGACAGAAGCGAAATCCACAAAACCGAAGCC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9306#0 ACGGGTATATCGAAGGGCTTCGGTTTTGTGGATTTCGCTTCTGTCCATGAAGCAAGACGT 60
consensus_9306#1 --------ATCGAAGGGCTTCGGTTTTGTGGATTTCGCTTCTGTCCATGAAGCAAGACGT 52
consensus_9306#2 --GATCCCCTCATAGGTGCGCAGGAGGACGAGTCATAAAGCT--TGACGGACCAAGTAAT 56
** *** * * * * ** * * * **** *
consensus_9306#0 TGGATTGGACCACCAGCAAAGGTATATTTCGTGTTGCGACGCTATAGAAATACGACTGNA 120
consensus_9306#1 TGGAT-GGACCACCAA-AAAGGTATATTTCGTGT-GCGACGCTAT-GAAATACGACTGA- 107
consensus_9306#2 CTGGTGGCATCTCCAG-AATGATGTATCA-ATGA-GTCAAGCTGG-TTGCGAGGAGTGC- 111
* * * * * *** ** * * *** ** * * *** * ** **
consensus_9306#0 TGTACANGCACTCCTTCGCAACCANGCTTGGATTCACNTGATACATTCATTCTGGAAGAT 180
consensus_9306#1 TGTACAG-CACTCCT-CGCAACCAG--CTTGATTCACT-GATACAT-CATTCTGGAT-AT 160
consensus_9306#2 TGTACAT-CAGTCGTATTTCAT-AG--CGTCGCACACGAAATATACCCTAAATAAAG-AG 166
****** ** ** * * * *** *** * * * * *
consensus_9306#0 GCCCCCGAGGTTACTTAGGTCCAGTCAAAGCTTTATAGACATCAGTCCTCCTGGCGTTGT 240
consensus_9306#1 GCCCCCG-GGTTACTT-GGTCC-GTCAA-GCTTTATG---ACTCGTCCTCCTG-CGTTGT 212
consensus_9306#2 GAAAACACATTTATATAAGGCT-------CTTTCATACACACTAGGCCCAT----GATTC 215
* * *** * * * ** ** * * ** * *
consensus_9306#0 CAAGAAAGTCTCCACCGGGAAGAACTGGANNTCTGTTCAAGGGTGGGTTCTAGTTCANNC 300
consensus_9306#1 CA--GAAGTCTCCACCGGAGA---CTGGATCT--GTTCAAGG---TGTTCTAGT---CAC 259
consensus_9306#2 CA---AACTATACGACAATTA-----CGAGGTGAAGATAAGCA--TGTTTAGGA------ 259
** ** * * * * * ** * *** *** *
consensus_9306#0 AACTTCAGAAAGGGCGAAGATCAAGTAGCCCATAAATAGTTCCAGTTGGCCGGAGGTTTC 360
consensus_9306#1 AACTTCAGAAGGCG---AGATCA-GTG--CTATAAATG---TCAGTTG--CCGAGGTCTC 308
consensus_9306#2 AACTTGACAA-------AGATAACCTGTACTGTGAATG-CATTACTTTTTGGTGGGCCAT 311
***** * ** **** * * * * *** * ** **
consensus_9306#0 TCCAAGTGGCAATCTTCTCAACAAAACTCCGGTCAGATNANGTGTTGATCTCATCGGTAC 420
consensus_9306#1 ---AAGTG-CAATCTCT----CACAAACTCGGTCG---ATGGTGTTGATCTCATCGGTAC 357
consensus_9306#2 CCAACGTC-TTGCTTCATGGACAGAAGCGAAATCCACAAAACCG--AAGCCCTTCGATAT 368
* ** * ** ** ** * * * * *** **
consensus_9306#0 AACTCCATGGTAATACTCTCGGTCTTGAGATGCTTGGATGCACTAACTACGGAAGATGAC 480
consensus_9306#1 AACTCCATG-TAATACTCTCG-TCTTGAGATGCTTGGATGCACTAACTACGGAAGATGAC 415
consensus_9306#2 ACCTGCGAACCTATGAGGGT---------------------------------------- 388
* ** * **
consensus_9306#0 ATTTGCCAGGTTTTTCAAGATACGGCCGACGTAAAGGTGCGACAGTGTCATGTCATGAGA 540
consensus_9306#1 ATTTGCCAGGTTTTTCAAG----------------------------------------- 434
consensus_9306#2 ------------------------------------------------------------
consensus_9306#0 GATGAAGTAACACATGCTCCCAGGTGCTTTGCTTTTGCGGAGCTTCCCACGGTTGCTGAT 600
consensus_9306#1 ------------------------------------------------------------
consensus_9306#2 ------------------------------------------------------------
consensus_9306#0 GCTTACAAAGTCATGGATATAGTAAACAAAGAATTCAAGCTTTTTGAGGTCGGAGGAAAA 660
consensus_9306#1 ------------------------------------------------------------
consensus_9306#2 ------------------------------------------------------------
consensus_9306#0 GCAGTAACAGTCTCGTACGCAAAGAACACTTTCAATACTATTATGGCAACACTAAAAACG 720
consensus_9306#1 ------------------------------------------------------------
consensus_9306#2 ------------------------------------------------------------
consensus_9306#0 GAAGGATCATATAATGCCCAGTTAAACAGTAGTCGCAACTTGGCTCTGGATTTAGCGCAT 780
consensus_9306#1 ------------------------------------------------------------
consensus_9306#2 ------------------------------------------------------------
consensus_9306#0 GCAGCTATGGCCGCACAAAATAATAACATATCACCTGATACTGTTGCAATGAATGCTGTT 840
consensus_9306#1 ------------------------------------------------------------
consensus_9306#2 ------------------------------------------------------------
consensus_9306#0 GCTGCATCAGCATTACTGAGTCAAACTTCAAACAATGGAGCTGCTGTTGCCCAGGCAGCG 900
consensus_9306#1 ------------------------------------------------------------
consensus_9306#2 ------------------------------------------------------------
consensus_9306#0 ATACAACAAAAACAAACTGAACAACATGTTTTATCAGCTCTGACGAAATCTTTGCGTAAC 960
consensus_9306#1 ------------------------------------------------------------
consensus_9306#2 ------------------------------------------------------------
consensus_9306#0 CATTCGGAACATACTGTCTCGTCTAACTATGCACCGTCTATGGCAGCACTCGTGGCATCT 1020
consensus_9306#1 ------------------------------------------------------------
consensus_9306#2 ------------------------------------------------------------
consensus_9306#0 GGTCAGCAGCTCCCACCTCCTTCGTTCCCGTTCAATGCTGTGACGGCATCTACGACTACA 1080
consensus_9306#1 ------------------------------------------------------------
consensus_9306#2 ------------------------------------------------------------
consensus_9306#0 TATCCATTTCCAGACACATCTAAGTACATATACGATGAGTCTACTCGCTTTTACTATGAT 1140
consensus_9306#1 ------------------------------------------------------------
consensus_9306#2 ------------------------------------------------------------
consensus_9306#0 CCTGTCACTGGTCTAATGTATGAACCTAACTCAAAATACTTCTACGACCGCGGAAGTCAG 1200
consensus_9306#1 ------------------------------------------------------------
consensus_9306#2 ------------------------------------------------------------
consensus_9306#0 CAATATTATTACTGGGATCAAACGAAGAGTACATATCTTCCTGTACCACAAACAAATCCT 1260
consensus_9306#1 ------------------------------------------------------------
consensus_9306#2 ------------------------------------------------------------
consensus_9306#0 CAATCCAATTCCGTCGATAATGCGGCTTCCAACTCTCAAACCGATA 1306
consensus_9306#1 ----------------------------------------------
consensus_9306#2 ----------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||