cluster # 9321

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Schistosoma mansoni
cluster # 9321 cluster # 9321 Sequences # 9 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9321#0 length = 1164 sequences # 7

consensus_9321#1 length = 521 sequences # 1
consensus_9321#2 length = 228 sequences # 1

consensusID : consensus_9321#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1164
fasta sequence

                              [GGGAGGGAAAAGTTAGGAACACGTGAAAGGCAGCTAAAAATTTAATTTAA--AGAATAACTACATATTCGTCAATTC-CGGAAAAAAGACGTGC-TACTCGTTGAGAGCGTTTAACTATGGTGTCG-GTAATAGATGTGCACGTCACNGAGAAAGTGTCTCCAATAGTTGATTCCAGNGGGGTCGTTTTTGGACTGAATAACAAAATCTTTAGAAAACTGTGGACTGGGAGGAATATGTCTAGGAATGTCGGCGAAAAATGGTGAATTGGAAGACTTCTGATATGATGATGACAGAGCAGGTGAGGTTAAAGTAACAAGTCCGGATGTCTGGAAGGGTGAATCCACAGTTTGAACAGTTGGGTTTGAGAAGGAAGGCACATGACTCGATAATAGTGTATCAAGTTGTTCAGGAGCATTGGTACCAGTGAGGTCACTAAATTGATCACTGTGAGATGAACGGATTACTGGAAGACGATAATCAATAACCCAGTTCAAAGCCTTACGACCCTGATGTGCATTTTGTTTACTCATACTCACAGCTGACATTGCAGTAAGTGAGAACGCTTTGACTGAAATTGAATGCTCTAGAACAGTCCAATCTGCGTTTTCGGGGTGAACAGTATACTCCATATGTTCCGTACCATTGAGCACACCTTGGAAGTCGATATTTACTGTGTCAGAGACCATTCGTTTGTTCTGAACTTGAATACAACTATATTCCACTGCCTTCAGTTGACCCATGTGAAACATGGGCCATGAAGAGTTAATCAGTTTGCAACTGTGCATAGCACCACCGGTAAGATCGACCTGACGATTGACAACATCTATGTTTAGTACGTTTGGATTGTATGGGTTGGGATATTTAAATTGTACAGAACTGACAACATCATGCCAAGGATGTTTGATAACGAACTTCTCCGACCAACGACGAGTGTCTGACAGCATCACTATTTGCAGGAAATCGTGTTTTCACGAGTTTCTAATTGTGAAAACACTAGAGATAAAAAAAGATGACACAATTCAGTAGAGATGCTTAAAACTACGATGATATTGTGGAGCTAGGAGGAACAGGATAAGAAAAATTGGTGGGAAACTAAATAAGCCAGACGTAGATGTACTGCTTAAGGAATCATATTCATTAACGGTCTAACATGTCAATGAATGTTAA]

[-] EMBL CD170830             [GGGAGGGAAAAGTTAGGAACACGTGAAAGGCAGCTAAAAATTTAATTTAA  AGAATAACTACATATTCGTCAATTC CGGAAAAAAGACGTGC TACTCGTTGAGAGCGTTTAACTATGGTGTCG G                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD196790             [            TTAGGAACACGTGAAAGGCAGCTAAAAATTTAATTTAANNAGAATAACTACATATTCGTCAATTCNCGGAAAAAAGACGTGCNTACTCGTTGAGAGCGTTTAACTATGGNGTCGTGTAATAGATGTGCACGTCACNGAGAAAGTGTCTCCAATAGTTGATTCCAGNGGGGTCGTTTTTGGACTGAATAACAAAATCTTTAGAAAACTGTGGACTGGGAGGAATATGTCTAGGAATGTCGGCGAAAAATGGTGAATTGGAAGACTTCTGATATGATGATGACAGAGCAGGTGAGGTTAAAGTAACAAGTCCGGATGTCTGGAAGGGTGAATCCACAGTTTGAACAGTTGGGTTTGAGAAGGAAGGCACATGACTCGATAATAGTGTATCAAGTTGTTCAGGAGCATTGGTACCAGTGAGGTCACTAAATTGATCACTGTGAGATGAACGGATTACTGGAAGACG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD196525             [            TTAGGAACACGTGAAAGGCAGCTAAAAATTTAATTTAA  AGAATAACTACATATTCGTCAATTC CGGAAAAAAGACGTGC TACTCGTTGAGAGCGTTTAACTATGGTGTCG GTAATAGATGTG ACGTCAC GAGAAAGTGTCTCCAAT GTTGATTCCAG GGGGTCGTTTTTGGACTGAATAACAAAATCTTTAGAAAACTGTGGACTGGGAGGAATATGTCTAGGAATGTCGGCGAAAAATGGTGAATTGGAAGACTTCTGATATGATGATGACAGAGCAGGTGAGGTTAAAGTAACAAGTCCGGATGTCTGGAAGGGTGAATCCACAGTTTGAACAGTTGGGTTTGAGAAGGAAGGCACATGACTCGATAATAGTGTATCAAGTTGTTCAGGAGCATTGGTAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CD164354             [                                                                                                                                                                                                                                                                                                                                                                                                    TAATAGTGTATCAAGTTGTTCAGGAGCATTGGTACCAGTGAGGTCACTAAA TGATCACTGTGAGATGAACGGATTACTGGAAGACGATAATCAATAACCCAGTTCAAAGCCTTACGACCCTGATGTGCATTTTGTTTACTCATACTCACAGCTGACATTGCAGTAAGTGAGAACGCTTTGACTGAAATTGAATGCTCTAGAACAGTCCAATCTGCGTTTTCGGGGTGAACAGTATACTCCATATGTTCCGTACCATTGAGCACACCTTGGAAGTCGATAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CD121801             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TTGACTGAGATTGAATGCTCTAGAACAGTCCAATCTGCGTTTTCGGGGTGAACAGTATACTCCATATGTTCCGTACCATTGAGCACACCTTGGAAGTCGATATTTACTGTGTCAGAGACCATTCGTTTGTTCTGAACTTGAATACAACTATATTCCACTGCCTTCAGTTGACCCATGTGAAACATGGGCCATGAAGAGTTAATCAGTTTGCAACTGTGCATAGCACCACCGGTAAGATCGACCTGACGATTGACAACATCTATGTTTAGTACGTTTGGATTGTATGGGTTGGGATATTTAAATTGTACAGAACTGACAACATCATGCCAAGGATGTTTGATAACGAACTTCTCCGACCAACGACGAGTGTCTGACAGCATCACTATTTGCAGGAAATCGTGTTTTCACGAGTTTCTAATTGTGAAAACA                                                                                                                                                                              ]
[-] EMBL CD061074             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CATTCGTTTGTTCTGAACTTGAATGCAACTATATTCCACTGCCTTCAGTTGACCCACGTGAAACATGGGCCATGAAGAGTTAATCAGTTTGCAACTGTGCATAGCACCACCGGTAAGATCGACCTGACGATTGATAACATCTATGTTTAGTACGTTTGGATTGTATGGGTTGGGATATTTAAATTGTACAGAACTGACAACATCATGCCAAGGATGTTTGATAACGAACTTCTCCGACCAACGACGAGTGTCTGACAGCATCACTATTTGCAGGAAATCGTGTTTTCACGAGTTTCTAATTGTGAAAACACTAGAGATAAAAAAAGATGACACAATTCAGTAGAGATGCTTAAAACTACGATGATATTGTGGAGCTAGGAGGAACAGGATAAGAAAAATTGGTGGGAAACTAAATAAGCCAGACGTAGATGTACTGCTTAAGGAATCATATTCATTAACGGTCTAACATGTCAATGAATGTTAA]
[-] EMBL CD072727             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TGTACAGAACTGACAACATCATGCTAAGGATGTTTGATAACGAACTTCTCCGACCAACGACGAGTGTCTGACAGCATCACTATTTGCAGGAAATCGTGTTTTCACGAGTTTCTAATTGTGAAAACACTAGAGATAAAAAAAGATGACACAATTCAGTAGAGATGCTTAAAACTACGATGATATTGTGGAGCTAGGAGGAACAGGATAAGAAAAATTGGTGGGAAACTAAATAAGCCAGACGTAGATGTACTGCTTAAGGAATCATATTCATTAACGGTCTgtaaatc             ]




>consensus_9321#0
GGGAGGGAAAAGTTAGGAACACGTGAAAGGCAGCTAAAAATTTAATTTAAAGAATAACTA
CATATTCGTCAATTCCGGAAAAAAGACGTGCTACTCGTTGAGAGCGTTTAACTATGGTGT
CGGTAATAGATGTGCACGTCACNGAGAAAGTGTCTCCAATAGTTGATTCCAGNGGGGTCG
TTTTTGGACTGAATAACAAAATCTTTAGAAAACTGTGGACTGGGAGGAATATGTCTAGGA
ATGTCGGCGAAAAATGGTGAATTGGAAGACTTCTGATATGATGATGACAGAGCAGGTGAG
GTTAAAGTAACAAGTCCGGATGTCTGGAAGGGTGAATCCACAGTTTGAACAGTTGGGTTT
GAGAAGGAAGGCACATGACTCGATAATAGTGTATCAAGTTGTTCAGGAGCATTGGTACCA
GTGAGGTCACTAAATTGATCACTGTGAGATGAACGGATTACTGGAAGACGATAATCAATA
ACCCAGTTCAAAGCCTTACGACCCTGATGTGCATTTTGTTTACTCATACTCACAGCTGAC
ATTGCAGTAAGTGAGAACGCTTTGACTGAAATTGAATGCTCTAGAACAGTCCAATCTGCG
TTTTCGGGGTGAACAGTATACTCCATATGTTCCGTACCATTGAGCACACCTTGGAAGTCG
ATATTTACTGTGTCAGAGACCATTCGTTTGTTCTGAACTTGAATACAACTATATTCCACT
GCCTTCAGTTGACCCATGTGAAACATGGGCCATGAAGAGTTAATCAGTTTGCAACTGTGC
ATAGCACCACCGGTAAGATCGACCTGACGATTGACAACATCTATGTTTAGTACGTTTGGA
TTGTATGGGTTGGGATATTTAAATTGTACAGAACTGACAACATCATGCCAAGGATGTTTG
ATAACGAACTTCTCCGACCAACGACGAGTGTCTGACAGCATCACTATTTGCAGGAAATCG
TGTTTTCACGAGTTTCTAATTGTGAAAACACTAGAGATAAAAAAAGATGACACAATTCAG
TAGAGATGCTTAAAACTACGATGATATTGTGGAGCTAGGAGGAACAGGATAAGAAAAATT
GGTGGGAAACTAAATAAGCCAGACGTAGATGTACTGCTTAAGGAATCATATTCATTAACG
GTCTAACATGTCAATGAATGTTAA

consensusID : consensus_9321#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 521
fasta sequence

                              [TGTTACTAGTAAACACCATTTGATTTCTCTAAATTTGCTCCTGCAGTATGTTTATGTGTAATCAAGTCTGACATCCAGCATACTGATAAACAAAACCCATTTGCGATACTCTCTTTTGCTTCACGTGATTTTGATTTATGTTACACTCTACTCGTATGACTATTAAAATGATTTAGTAGACCACTACCAAATCTGCATCTTTGACCATAACTATCAGCTTTATTTGTTTTACAGGACTGTTCTAGAGCATTCAATTTCAGTCAAAGCGTTCTCACTTATTGCAATGTCAGCTGTGAGTATGAGTAAACAAAATGCACATCAGGTACGTCCTAAAGTTTTGACATTGTTTGTTCGATTTCTGTATCGTACTGAGATATGTCACATTTAAATTACAAGACAAGTAAAATAAGTACTTCGGTCATCGTTTCGTCATTCCATTCTGTACTTTTTACCTTTGTAAACTATAGCAGAATGAATTTATGAACATTAAACAAAAAAGTGATGTTATTGCAAATACAGTT]

[+] EMBL CD134209             [TGTTACTAGTAAACACCATTTGATTTCTCTAAATTTGCTCCTGCAGTATGTTTATGTGTAATCAAGTCTGACATCCAGCATACTGATAAACAAAACCCATTTGCGATACTCTCTTTTGCTTCACGTGATTTTGATTTATGTTACACTCTACTCGTATGACTATTAAAATGATTTAGTAGACCACTACCAAATCTGCATCTTTGACCATAACTATCAGCTTTATTTGTTTTACAGGACTGTTCTAGAGCATTCAATTTCAGTCAAAGCGTTCTCACTTATTGCAATGTCAGCTGTGAGTATGAGTAAACAAAATGCACATCAGGTACGTCCTAAAGTTTTGACATTGTTTGTTCGATTTCTGTATCGTACTGAGATATGTCACATTTAAATTACAAGACAAGTAAAATAAGTACTTCGGTCATCGTTTCGTCATTCCATTCTGTACTTTTTACCTTTGTAAACTATAGCAGAATGAATTTATGAACATTAAACAAAAAAGTGATGTTATTGCAAATACAGTT]




>consensus_9321#1
TGTTACTAGTAAACACCATTTGATTTCTCTAAATTTGCTCCTGCAGTATGTTTATGTGTA
ATCAAGTCTGACATCCAGCATACTGATAAACAAAACCCATTTGCGATACTCTCTTTTGCT
TCACGTGATTTTGATTTATGTTACACTCTACTCGTATGACTATTAAAATGATTTAGTAGA
CCACTACCAAATCTGCATCTTTGACCATAACTATCAGCTTTATTTGTTTTACAGGACTGT
TCTAGAGCATTCAATTTCAGTCAAAGCGTTCTCACTTATTGCAATGTCAGCTGTGAGTAT
GAGTAAACAAAATGCACATCAGGTACGTCCTAAAGTTTTGACATTGTTTGTTCGATTTCT
GTATCGTACTGAGATATGTCACATTTAAATTACAAGACAAGTAAAATAAGTACTTCGGTC
ATCGTTTCGTCATTCCATTCTGTACTTTTTACCTTTGTAAACTATAGCAGAATGAATTTA
TGAACATTAAACAAAAAAGTGATGTTATTGCAAATACAGTT

consensusID : consensus_9321#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 228
fasta sequence

                              [ACACCTTGGAAGTCGNTATTTACTGTGTCAGAGNCCATTCGTTTGTTNTGNAGGTTGAATACGAGTATATTCCACTGCCTTCAGTTGACCCATGNGAAANAANGGCCNTGAAGAGTTAATCAGTTTGCAACTGTGCATAGCACCACCGGTAAGATCGACCTGANGNTTGACAACATNTATGTTTAGTACGTTTGGATTGTATGGGTTGGGATATTTAAATTGTACAGA]

[-] EMBL AA559392             [ACACCTTGGAAGTCGNTATTTACTGTGTCAGAGNCCATTCGTTTGTTNTGNAGGTTGAATACGAGTATATTCCACTGCCTTCAGTTGACCCATGNGAAANAANGGCCNTGAAGAGTTAATCAGTTTGCAACTGTGCATAGCACCACCGGTAAGATCGACCTGANGNTTGACAACATNTATGTTTAGTACGTTTGGATTGTATGGGTTGGGATATTTAAATTGTACAGA]




>consensus_9321#2
ACACCTTGGAAGTCGNTATTTACTGTGTCAGAGNCCATTCGTTTGTTNTGNAGGTTGAAT
ACGAGTATATTCCACTGCCTTCAGTTGACCCATGNGAAANAANGGCCNTGAAGAGTTAAT
CAGTTTGCAACTGTGCATAGCACCACCGGTAAGATCGACCTGANGNTTGACAACATNTAT
GTTTAGTACGTTTGGATTGTATGGGTTGGGATATTTAAATTGTACAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9321#0      GGGAGGGAAAAGTTAGGAACACGTGAAAGGCAGCTAAAAATTTAATTTAAAGAATAACTA 60
consensus_9321#2      ------------------------------------------------------------
consensus_9321#1      ------------------------------------------------------------
                                                                                  

consensus_9321#0      CATATTCGTCAATTCCGGAAAAAAGACGTGCTACTCGTTGAGAGCGTTTAACTATGGTGT 120
consensus_9321#2      ------------------------------------------------------------
consensus_9321#1      ------------------------------------------------------------
                                                                                  

consensus_9321#0      CGGTAATAGATGTGCACGTCACNGAGAAAGTGTCTCCAATAGTTGATTCCAGNGGGGTCG 180
consensus_9321#2      ------------------------------------------------------------
consensus_9321#1      ------------------------------------------------------------
                                                                                  

consensus_9321#0      TTTTTGGACTGAATAACAAAATCTTTAGAAAACTGTGGACTGGGAGGAATATGTCTAGGA 240
consensus_9321#2      ------------------------------------------------------------
consensus_9321#1      ------------------------------------------------------------
                                                                                  

consensus_9321#0      ATGTCGGCGAAAAATGGTGAATTGGAAGACTTCTGATATGATGATGACAGAGCAGGTGAG 300
consensus_9321#2      ------------------------------------------------------------
consensus_9321#1      ------------------------------------------------------------
                                                                                  

consensus_9321#0      GTTAAAGTAACAAGTCCGGATGTCTGGAAGGGTGAATCCACAGTTTGAACAGTTGGGTTT 360
consensus_9321#2      ------------------------------------------------------------
consensus_9321#1      ------------------------------------------------------------
                                                                                  

consensus_9321#0      GAGAAGGAAGGCACATGACTCGATAATAGTGTATCAAGTTGTTCAGGAGCATTGGTACCA 420
consensus_9321#2      ------------------------------------------------------------
consensus_9321#1      ------------------------------------------------------------
                                                                                  

consensus_9321#0      GTGAGGTCACTAAATTGATCACTGTGAGATGAACGGATTACTGGAAGACGATAATCAATA 480
consensus_9321#2      ------------------------------------------------------------
consensus_9321#1      ------------------------------------------------TGTTACTAGTAA 12
                                                                                  

consensus_9321#0      ACCCAGTTCAAAGCCTTACGACCCTGATGTGCATTTTGTTTACTCATACTCACAGCTGAC 540
consensus_9321#2      ------------------------------------------------------------
consensus_9321#1      ACACCATTTGATTTCTCTAAATTTGCTCCTGCAGTATGTTTATGTGTAATCAAGTCTGAC 72
                                                                                  

consensus_9321#0      ATTGCAGTAAGTGAGAACGCTTTGACTGAAATTGAATGCTCTAGAACAGTCCAATCTGCG 600
consensus_9321#2      ------------------------------------------------------------
consensus_9321#1      ATCCAGCATACTGATAA-------ACAAAACCCATTTGCGATACTCTCTTTTGCTTCACG 125
                                                                                  

consensus_9321#0      TTTTCGGGGTGAACAGTATACTCCATATGTTCCGTACCATTGAGCACACCTTGGAAGTCG 660
consensus_9321#2      ---------------------------------------------ACACCTTGGAAGTCG 15
consensus_9321#1      TGATTTTGATTTATGTTACACTCTACTCGTATG--ACTATTAAAATGATTTAGTAGACCA 183
                                                                     *  * * *   * 

consensus_9321#0      ATATTTA--CTGTGTCAGAGACCATTCGTTTGTTCTGAAC-TTGAATACAACTATATTCC 717
consensus_9321#2      NTATTTA--CTGTGTCAGAGNCCATTCGTTTGTTNTGNAGGTTGAATACGAGTATATTCC 73
consensus_9321#1      CTACCAAATCTGCATCTTTGACCATAACTATCAGCTTTATTTGTTTTACAGGACTGTTCT 243
                       **   *  ***  **   * ****   * *    *  *  *    ***     * *** 

consensus_9321#0      ACTGCCTTCAGTTGACCCATGTGAAACATGGGCCATGAAGAGTTAATCAGTTTGCAACTG 777
consensus_9321#2      ACTGCCTTCAGTTGACCCATGNGAAANAANGGCCNTGAAGAGTTAATCAGTTTGCAACTG 133
consensus_9321#1      AGAGCATTCAATTTCAGTCAAAGCGTTCTCACTTATTGCAATGTCAGCTGTGAGTATGAG 303
                      *  ** **** **         *            *    *  * * * **  * *   *

consensus_9321#0      TGCATAGCACCACCGGTAAGATCGACCTGACGATTGACAACATCTATGTTTAGTACGTTT 837
consensus_9321#2      TGCATAGCACCACCGGTAAGATCGACCTGANGNTTGACAACATNTATGTTTAGTACGTTT 193
consensus_9321#1      TAAACAAAATGCACATCAGGTACGTCCTAAAGTTT--TGACATTGTTTGTTCG-ATTTCT 360
                      *  * *  *    *   * *  ** *** * * **    ****   *  ** * *  * *

consensus_9321#0      GGATTGTA-TGGGTTGGG--ATATTTAAATTGTACAGAACTGACAACATCATGCCAAGGA 894
consensus_9321#2      GGATTGTA-TGGGTTGGG--ATATTTAAATTGTACAGA---------------------- 228
consensus_9321#1      GTATCGTACTGAGATATGTCACATTTAAATTACAAGACAAGTAAAATAAGTACTTCGGTC 420
                      * ** *** ** * *  *  * *********  *                          

consensus_9321#0      TGTTTGATAACGAACTTCTCCGACCAACGACGAGTGTCTGACAGCATCACTATTTGCAGG 954
consensus_9321#2      ------------------------------------------------------------
consensus_9321#1      ATCGTTTCGTCATTCCATTCTGTACTTTTTACCTTTGTAAACTATAGCAGAATGAATTTA 480
                                                                                  

consensus_9321#0      AAATCGTGTTTTCACGAGTTTCTAATTGTGAAAACACTAGAGATAAAAAAAGATGACACA 1014
consensus_9321#2      ------------------------------------------------------------
consensus_9321#1      TGAACATTAAACAAAAAAGTGATGTTATTGCAAATACAGTT------------------- 521
                                                                                  

consensus_9321#0      ATTCAGTAGAGATGCTTAAAACTACGATGATATTGTGGAGCTAGGAGGAACAGGATAAGA 1074
consensus_9321#2      ------------------------------------------------------------
consensus_9321#1      ------------------------------------------------------------
                                                                                  

consensus_9321#0      AAAATTGGTGGGAAACTAAATAAGCCAGACGTAGATGTACTGCTTAAGGAATCATATTCA 1134
consensus_9321#2      ------------------------------------------------------------
consensus_9321#1      ------------------------------------------------------------
                                                                                  

consensus_9321#0      TTAACGGTCTAACATGTCAATGAATGTTAA 1164
consensus_9321#2      ------------------------------
consensus_9321#1      ------------------------------