cluster # 9328

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Schistosoma mansoni
cluster # 9328 cluster # 9328 Sequences # 9 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9328#0 length = 613 sequences # 4

consensus_9328#1 length = 420 sequences # 4
consensus_9328#2 length = 128 sequences # 1

consensusID : consensus_9328#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 613
fasta sequence

                              [TATGTAGTCTATCTGGTGGAGTAAATCCAGCCGTATGGGAAGATATAACTGGTTCAACACCTATGACACATCATAAAAATTGTGTTTCATTTACTACAACTGTTTCTGCCAGATTGTGGTTGATGGATTGCCCAACTGATATTCCAGTTACAGAGCTAGCAACTCGCATTTACAATGAAAGCATTGAACCACCAATTTTGGGAAGATTTGTTATTTATGCTCGTCAATCGACCGATCTGGATACAGAAGTCGAACTAGAAACGCTAGACAAATTACAAAAACAACTTCCTCATGCTCAAGATATGAAGAGAAGTATTTCACGCATCAAAAAGTTTTCAACCGAATTTGCTCAAATTAGATGCATCTGCCTGACAGACGACAACAATGATAAAACTCTGGAGTGTTTAGAACATTACTGTCAAGTTGCAATCGGTCCATTTGTTGAGATTCAACAAAACAAGCCTGTCTGGATTGAAATGGTTGGAAATCTGGTACCAGTGTTAAGATCTGATGAACAGCTGAACTTTACCATTCGACCATTCCATGAGAATCGAATTACATTCCCAGTCCGTTTGCGAGACGTATTGAGTCCTTGAGCGAAACTGCGGCCTGA]

[-] EMBL CD063751             [TATGTAGTCTATCTGGTGGAGTAAATCCAGCCGTATGGGAAGATATAACTGGTTCAACACCTATGACACATCATAAAAATTGTGTTTCATTTACTACAACTGTTTCTGCCAGATTGTGGTTGATGGATTGCCCAACTGATATTCCAGTTACAGAGCTAGCAACTCGCATTTACAATGAAAGCATTGAACCACCAATTTTGGGAAGATTTGTTATTTATGCTCGTCAATCGACCGATCTGGATACAGAAGTCGAACTAGAAACGCTAGACAAATTACAAAAACAACTTCCTCATGCTCAAGATATGAAGAGAAGTATTTCACGCATCAAAAAGTTTTCAACCGAATTTGCTCAAATTAGATGCATCTGCCTGACAGACGACAACAATGATAAAACTCTGGAGTGTTT                                                                                                                                                                                                               ]
[+] EMBL CD186019             [                                                CTGGTTCAACACCTATGACACATCATAAAAATTGTGTTTCATTTACTACAACTGTTTCTGCCAGATTGTGGTTGATGGATTGCCCAACTGATATTCCAGTTACAGAGCTAGCAACTCGCATTTACAATGAAAGCATTGAACCACCAATTTTGGGAAGATTTGTTATTTATGCTCGTCAATCGACCGATCTGGATACAGAAGTCGAACTAGAAACGCTAGACAAATTACAAAAACAACTTCCTCATGCTCAAGATATGAAGGGAAGTATTTCACGCATCAAAAAGTTTTCAACCGAATTTGCTCAAATTAGATGCATCTGCCTGACAGACGACAACAATGATAAAACTCTGGAGTGTTTAGAACATTACTGTCAAGTTGCAATCGGTCCATTTGTTGAGATTCAACAAAACAAGCCTGTCTGGATTGAAATGGTTGGAAATCTGGTACCAGTGTTAAGATCTGATGAACAGCTGAACTTTACCATTCGACCATTCCATGAGAATCGAATTACATTCCCAGTCCG                                          ]
[-] EMBL CD187635             [                                                                                                                                                                                                                                                          CGAACTAGAAACGCTAGACAAATTACAAAAACAACTTCTTCATGCTCAAGATATGAAGAAAAGTATTTCACGCATCAGAAAGTTTTCAACGGAATTTGCTCAAATTAGATGCATCTGCGTGACAGACGACAACAATGATAAAACTCTGGAGTGTTTAGAACATTACTGTCAAGTTGCAATCGGTCCATTTGTTGAGATTCAACAAAACAAGCCTGTCTGGATTGAAATGGTTGGAAATCTGGTACCAGTGTTAAGATCTGATGAACAGTTGAACTTTACCATTCGACCATTCCATGAGAATAGAATTACATT                                                   ]
[-] EMBL CD059182             [                                                                                                                                                                                                                                                                                                                                                                                                    TAAAACTCTGGAGTGTTTAGAACATTACTGTCAAGTTGCAATCGGTCCATTTGTTGAGATTCAACAAAACAAGCCTGTCTGGATTGAAATGGTTGGAAATCTGGTACCAGTGTTAAGATCTGATGAACAGCTGAACTTTACCATTCGACCATTCCATGAGAATCGAATTACATTCCCAGTCCGTTTGCGAGACGTATTGAGTCCTTGAGCGAAACTGCGGCCTGA]




>consensus_9328#0
TATGTAGTCTATCTGGTGGAGTAAATCCAGCCGTATGGGAAGATATAACTGGTTCAACAC
CTATGACACATCATAAAAATTGTGTTTCATTTACTACAACTGTTTCTGCCAGATTGTGGT
TGATGGATTGCCCAACTGATATTCCAGTTACAGAGCTAGCAACTCGCATTTACAATGAAA
GCATTGAACCACCAATTTTGGGAAGATTTGTTATTTATGCTCGTCAATCGACCGATCTGG
ATACAGAAGTCGAACTAGAAACGCTAGACAAATTACAAAAACAACTTCCTCATGCTCAAG
ATATGAAGAGAAGTATTTCACGCATCAAAAAGTTTTCAACCGAATTTGCTCAAATTAGAT
GCATCTGCCTGACAGACGACAACAATGATAAAACTCTGGAGTGTTTAGAACATTACTGTC
AAGTTGCAATCGGTCCATTTGTTGAGATTCAACAAAACAAGCCTGTCTGGATTGAAATGG
TTGGAAATCTGGTACCAGTGTTAAGATCTGATGAACAGCTGAACTTTACCATTCGACCAT
TCCATGAGAATCGAATTACATTCCCAGTCCGTTTGCGAGACGTATTGAGTCCTTGAGCGA
AACTGCGGCCTGA

consensusID : consensus_9328#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 420
fasta sequence

                              [ATTGAACCACCAATTTTGGGAAGATTTGTTATTTATGCTCGTCAATCGACCGATCTGGATACAGAAGTCGAACTAGAAACGCTAGACAAATTACAAAAACAACTTCCTCATGCTCAAGATATGAAGAGAAGTATTTCACGCATCAAAAAGTTTTCAACCGNAATTTGCTCAAATTAGATGCATCTGCCTGACAGACGACAACAATGATAAAACTCTGGAGTGTTTAGAACATTACTGTCAAGTTGCAATCGGTCCATTTGTTGAGATTCAACAAAACAAGCCTGTCTGGATTGAAATGGTTGGAAATCTGGTACCAGTGTTAAGATCTGATGAACAGCTGAACTTTACCATTCGACCATTCCATGAGAATCGAATTACATTCCCAGTCCGTTTGCGAGACGTATTGAGTCGGCAGTCGAA]

[+] EMBL CD072042             [ATTGAACCACCAATTTTGGGAAGATTTGTTATTTATGCTCGTCAATCGACCGATCTGGATACAGAAGTCGAACTAGAAACGCTAGACAAATTACAAAAACAACTTCCTCATGCTCAAGATATGAAGAGAAGTATTTCACGCATCAAAAAGTTTTCAACCGNAATTTGCTCAAATTAGATGCATCTGCCTGACAGACGACAACAATGATAAAACTCTGGAGTGTTTAGAACATTACTGTCAAGTTGCAATCGGTCCATTTGTTGAGATTCAACAAAACAAGCCTGTCTGGATTGAAATGGTTGGAAATCTGGTACCAGTGTTAAGATCTGATGAACAGCTGAACTTTACCATTCGACCATTCCATGAGAATCGAATTACATTCCCAGTCCGTTTGCGAGACGTATTGAGTCGGCAGTCGAA]
[+] EMBL CD059247             [                                                                                                                                                                                      TCTGCCTGACAGACGACAACAATGATAAAACTCTGGAGTGTTTAGAACATTACTGTCAAGTTGCAATCGGTCCATTTGTTGAGATTCAACAAAACAAGCCTGTCTGGATTGAAATGGTTGGAAATCTGGTACCAGTGTTAAGATCTGATGAACAGCTGAACTTTACCATTCGACCATTCCATGAGAATCGAATTACATTCCCAGTCCGTTTGCGAGA                     ]
[+] EMBL CD059197             [                                                                                                                                                                                      TCTGCCTGACAGACGACAACAATGATAAAACTCTGGAGTGTTTAGAACATTACTGTCAAGTTGCAATCGGTCCATTTGTTGAGATTCAACAAAACAAGCCTGTCTGGATTGAAATGGTTGGAAATCTGGTACCAGTGTTAAGATCTGATGAACAGCTGAACTTTACCATTCGACCATTCCATGAGAATCGAATTACATTCCCAGTCCGATTGCGAGA                     ]
[-] EMBL CD059287             [                                                                                                                                                                                       CTGCCTGACAGACGACAACAATGATAAAACTCTGGAGTGTTTAGAACATTACTGTCAAGTTGCAATCGGTCCATTTGTTGAGATTCAACAAAACAAGCCTGTCTGGATTGAAATGGTTGGAAATCTGGTACCAGTGTTAAGATCTGATGAACAGCTGAACTTTACCATTCGACCATTCCATGAGAATCGAATTACATTCCCAGTCCGTTTGCGAGAC                    ]




>consensus_9328#1
ATTGAACCACCAATTTTGGGAAGATTTGTTATTTATGCTCGTCAATCGACCGATCTGGAT
ACAGAAGTCGAACTAGAAACGCTAGACAAATTACAAAAACAACTTCCTCATGCTCAAGAT
ATGAAGAGAAGTATTTCACGCATCAAAAAGTTTTCAACCGNAATTTGCTCAAATTAGATG
CATCTGCCTGACAGACGACAACAATGATAAAACTCTGGAGTGTTTAGAACATTACTGTCA
AGTTGCAATCGGTCCATTTGTTGAGATTCAACAAAACAAGCCTGTCTGGATTGAAATGGT
TGGAAATCTGGTACCAGTGTTAAGATCTGATGAACAGCTGAACTTTACCATTCGACCATT
CCATGAGAATCGAATTACATTCCCAGTCCGTTTGCGAGACGTATTGAGTCGGCAGTCGAA

consensusID : consensus_9328#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 128
fasta sequence

                              [TTCACACCATAGCCGCCGCCACAGTCACCACAGTACAGCCTCCACCATATCACTATCGCCATAACCGCTACCAACAACCTGCTTCGGCTCTTGCACTTTATGAATCTGTATGCCATATGCCGGCCGTG]

[+] EMBL CD167688             [TTCACACCATAGCCGCCGCCACAGTCACCACAGTACAGCCTCCACCATATCACTATCGCCATAACCGCTACCAACAACCTGCTTCGGCTCTTGCACTTTATGAATCTGTATGCCATATGCCGGCCGTG]




>consensus_9328#2
TTCACACCATAGCCGCCGCCACAGTCACCACAGTACAGCCTCCACCATATCACTATCGCC
ATAACCGCTACCAACAACCTGCTTCGGCTCTTGCACTTTATGAATCTGTATGCCATATGC
CGGCCGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9328#0      TATGTAGTCTATCTGGTGGAGTAAATCCAGCCGTATGGGAAGATATAACTGGTTCAACAC 60
consensus_9328#1      ------------------------------------------------------------
consensus_9328#2      ------------------------------------------------------------
                                                                                  

consensus_9328#0      CTATGACACATCATAAAAATTGTGTTTCATTTACTACAACTGTTTCTGCCAGATTGTGGT 120
consensus_9328#1      ------------------------------------------------------------
consensus_9328#2      ------------------------------------------------------------
                                                                                  

consensus_9328#0      TGATGGATTGCCCAACTGATATTCCAGTTACAGAGCTAGCAACTCGCATTTACAATGAAA 180
consensus_9328#1      ------------------------------------------------------------
consensus_9328#2      ------------------------------------------------------------
                                                                                  

consensus_9328#0      GCATTGAACCACCAATTTTGGGAAGATTTGTTATTTATGCTCGTCAATCGACCGATCTGG 240
consensus_9328#1      --ATTGAACCACCAATTTTGGGAAGATTTGTTATTTATGCTCGTCAATCGACCGATCTGG 58
consensus_9328#2      ------------------------------------------------------------
                                                                                  

consensus_9328#0      ATACAGAAGTCGAACTAGAAACGCTAGACAAATTACAAAAACAACTTCCTCATGCTCAAG 300
consensus_9328#1      ATACAGAAGTCGAACTAGAAACGCTAGACAAATTACAAAAACAACTTCCTCATGCTCAAG 118
consensus_9328#2      --------TTCACACCATAGCCGCCGCCACAGTCACCACAGTA-CAGCCTC-----CACC 46
                               **  ** * *  ***      * * ** * *  * *  ****     **  

consensus_9328#0      ATATGAAGAGAAGTATTTCACGCATCAAAAAGTTTTCAACCGAA-TTTGCTCAAATTAGA 359
consensus_9328#1      ATATGAAGAGAAGTATTTCACGCATCAAAAAGTTTTCAACCGNAATTTGCTCAAATTAGA 178
consensus_9328#2      ATATCACTATCGCCATAACCGCTACCAACAACCTGCT--TCGGCTCTTGC----ACTTTA 100
                      **** *  *     **  *    * *** **  *      **    ****    * *  *

consensus_9328#0      TGCATCTGCCTGACAGACGACAACAATGATAAAACTCTGGAGTGTTTAGAACATTACTGT 419
consensus_9328#1      TGCATCTGCCTGACAGACGACAACAATGATAAAACTCTGGAGTGTTTAGAACATTACTGT 238
consensus_9328#2      TGAATCTGTATGCCATATGCCGGCCGTG-------------------------------- 128
                      ** *****  ** ** * * *  *  **                                

consensus_9328#0      CAAGTTGCAATCGGTCCATTTGTTGAGATTCAACAAAACAAGCCTGTCTGGATTGAAATG 479
consensus_9328#1      CAAGTTGCAATCGGTCCATTTGTTGAGATTCAACAAAACAAGCCTGTCTGGATTGAAATG 298
consensus_9328#2      ------------------------------------------------------------
                                                                                  

consensus_9328#0      GTTGGAAATCTGGTACCAGTGTTAAGATCTGATGAACAGCTGAACTTTACCATTCGACCA 539
consensus_9328#1      GTTGGAAATCTGGTACCAGTGTTAAGATCTGATGAACAGCTGAACTTTACCATTCGACCA 358
consensus_9328#2      ------------------------------------------------------------
                                                                                  

consensus_9328#0      TTCCATGAGAATCGAATTACATTCCCAGTCCGTTTGCGAGACGTATTGAGTCCTTGAGCG 599
consensus_9328#1      TTCCATGAGAATCGAATTACATTCCCAGTCCGTTTGCGAGACGTATTGAGTCGGCAGTCG 418
consensus_9328#2      ------------------------------------------------------------
                                                                                  

consensus_9328#0      AAACTGCGGCCTGA 613
consensus_9328#1      AA------------ 420
consensus_9328#2      --------------