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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9336#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1187 fasta sequence
[TCGGCCGCGGGGTTTCTATCGAAAGGATTTCCCATGTGATATACTGCAGAGTATGGCGTTGGCCTGACCTCCAGAGTCACCATGAGTTAAGGCCTGTTGAAAATTGCAAATTGCCATTCAGTTCTAAGGAGACGGAAGTGTGCATTAACCCATATCATTATACTCGCGTTGATTATCCTGTCTTGCCCCCTGTATTAGTGCCTAGGCATAACGAATACCCAACAATCGAGTCTACTAAAAAGGATTCCCCAAGTGATGAAACATGTGACTCACACTGTTATTCAGGATTCCATGCTGTAAACTATCAGGAACCAAAATATTGGTGCAGTGTTGTGTATTATGAATTAAATTCACGTATTGGTGAAGCATACTTTGCCAGTATACCCAGTATCATTGTCGATGGTTTCACTAATCCAGGTCGGGATAGTGGTCGGTTTTCCGTAGGATTTTTATCAAATATTAATAGAAGCCTGGCTGTTGAAAATGCCCGCAAACAAATTGGAAAGGGTGTTCATTTGTTTACTTTTGGTGGTGATGTCTACGCAGAATGCTTATCGGATTGCAGTATTTTCATTCAATCCCGCGAGTGT-AAT-GAACGTCATCATTTTCACCCAACAACTGTGATCAAAATACCTCCAGGTGGATGCTTACGCATATTTTCCAATCGTCAATTTGCTCATATTCTTAGTTATACTATATCACGAGGTGTTGAAGCTACCTATGATCTTGTACGTATGTGTACCATACGATTAAGTTTTGTTAAAGGTTGGGGTGCTGAATACCACCGACAGGACATTACTTCTACACCATGTTGGATAGAAATCCACTTGCGTGGTCCTTTCTTATGGCTTGATCGCGTTCTTCGTCAAATGGGTCCAAGTCGAAGTCCGATCTCTTCAGTTTCCTAACTCATAAAAGCTTACTATGTCAACAGCTGTCAGTCATTTCTTGTTTTATTTTACTCTATCATACACAAACATACCCTCATCACCGTCCCGCTACACCCATATTGTGATCATTTATTTGAGTGACAAAACTTTATCAATATTTTATTCACTCTGTGATTGTGTGGTTATTCAGTTCTTATATACCACTTACTTATTGTCAAATAAGTTTACCAANTTTTTTTGTCTTTGTATACGCTTCCCTCACCTTTTTTTCTAATTTTTAAACAGAAGACAATTGTA]
[+] EMBL CD081730 [TCGGCCGCGGGGTTTCTATCGAAAGGATTTCCCATGTGATATACTGCAGAGTATGGCGTTGGCCTGACCTCCAGAGTCACCATGAGTTAAGGCCTGTTGAAAATTGCAAATTGCCATTCAGTTCTAAGGAGACGGAAGTGTGCATTAACCCATATCATTATACTCGCGTTGATTATCCTGTCTTGCCCCCTGTATTAGTGCCTAGGCATAACGAATACCCAACAATCGAGTCTACTAAAAAGGATTCCCCAAGTGATGAAACATGTGACTCACACTGTTATTCAGGATTCCATGCTGTAAACTATCAGGAACCAAAATATTGGTGCAGTGTTGTGTATTATGAATTAAATTCACGTATTGGTGAAGCATACTTTGCCAGTATACCCAGTATCATTGTCGATGGTTTCACTAATCCAGGTCGGGATAGTGGTCGGTTTTCCGTAGGATTTTTATCAAATATTAATAGAAGCCTGGCTGTTGAAAATGCCCGCAAACAAATTGGAAAGGGTGTTCATTTGTTTACTTTTGGTGGTGATGTCTACGCAGAATGCTTATCGGATTGCAGTATTTTCATTCAATCCCGCGAGTGT AAT GAACGTCATCATTTTCACCCAACAACTGTGATCAAAATACCTCCAGGTGGATGCTTACGCATATTTTCCAATCGTCAATTTGCTCATATTCTTAGTTATACTATATCACGAGGTGTTGAAGCTACCTATGATCTTGTACGTATGTGTACCATACGATTAAGTTTTGTTAAAGGTTGGGGTGCTGAATACCACCGACAGGACATTACTTCTACACCATGTTGGATAGAAATCCACTTGCGTGGTCCT ]
[-] EMBL CD194980 [ TTGCAGTATTTTCATTCAATCCCGCGAGTGT AAT GAACGTCATCATTTTCACCCAACAACTGTGATCAAAATACCTCCAGGTGGATGCTTACGCATATTTTCCAATCGTCAATTTGCTCATATTCTCAGTTATACTATATCACGAGGTGTTGAAGCTACCTATGATCTTGTACGTATGTGTACCATACGATTAAGTTTTGTTAAAGGTTGGGGTGCTGAATACCACCGACAGGACATTACTTCTACACCATGTTGGATAGAAATCCACTTGCGTGGTCCTTTCTTATGGCTTGATCGCGTTCTTCGTCAAATGGGTCCAAGTCGAAGTCCGATCTCTTCAGTTTCCTAACTCATAAAAGCTTACTATGTCAACAGCTGTCAGTCATTTCTTG ]
[+] EMBL CD065319 [ aggATCCC CGATTGTGAATAGTAGGTCATCATTTTCACCCAACAACTGTGATCAAAATACCTCCAGGTGGATGCTTACGCATATTGTCCAATCGTCAATTTGCTCATATTCTTAGTTATACTATATCACGAGGTGTAGAAGCTACCTATGATCTTGTACGTATGTGTACCATACGATTAAGTTTTGTTAAAGGTTGGGGTGCTGAATACCACCGACAGGACATTACTTCTACACCATGTTGGATAGAAATCCACTTGCGTGGTCCTTTCTTATGGCTTGATCGCGTTCTTCGTCAAATGGGTCCAAGTCGAAGTCCGATCTCTTCAGTTTCCTAACTCATAAAAGCTTACTATGTCAACAGCTGTCAGTCATTTCTTGTTTTATTTTACTCTA ]
[+] EMBL CD182943 [ ggAGTTTCCTAACTCATAAAAGCTTACTATGTCAACAGCTGTCAGTCATTTCTTGTTTTATTTTACTCTATCATACACAAACATACCCTCATCACCGTCCCGCTACACCCATATTGTGATCATTTATTTGAGTGACAAAACTTTATCAATATTTTATTCACTCTGTGATTGTGTGGTTATTCAGTTCTTATATACCACTTACTTATTGTCAAATAAGTTTACCAANTTTTTTTGTCTTTGTATACGCTTCCCTCACCTTTTT ]
[-] EMBL CD201222 [ ACACAAACATACCCTCATCACCGTCCCGCTACACCCATATTGTGATCATTTATTTGAGTGACAAAACTTTATCAATATTTTATTCACTCTGTGATTGTGTGGTTATTCAGTTCTTATATACCACTTACTTATTGTCAAATAAGTTTACCAA TTTTTTTGTTTTTGTATACGCTT CCTCACCCTTTTTTCTAATTTTTAAACAGAAGACAATTGTA]
consensusID : consensus_9336#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 557 fasta sequence
[CTCGCGTTGATTATCCTGTCTTGCCCCCTGTATTAGTGCCTAGGCATAACGAATACCCAACAATCGAGTCTACTAAAAAGGATTCCCCAAGTGATGAAACATGTGACTCACACTGTTATTCAGGATTCCATGCTGTAAACTATCAGGAACCAAAATATTGGTGCAGTGTTGTGTATTATGAATTAAATTCACGTATTGGTGAAGCATACTTTGCCAGTATACCCAGTATCATTGTCGATGGTTTCACTAATCCAGGTCGGGATAGTGGTCGGTTTTCCGTAGGATTTTTATCAAATATTAATAGAAGCCTGGCTGTTGAAAATGCCCGCAAACAAATTGGAAAGGAATGCTTATCGGATTGCAGTATTTTCATTCAATCCCGCGAGTGTAATGAACGTCATCATTTTCACCCAACAACTGTGATCAAAATACCTCCAGGTGGATGCTTACGCATATTTTCCAATCGTCAATTTGCTCATATTCTTAGTTATACTATATCACGAAGTGTTGAAGCTACCTATGATCTTGTACGTATGTGTACCATACGATTAAGTTTT]
[+] EMBL CD195273 [CTCGCGTTGATTATCCTGTCTTGCCCCCTGTATTAGTGCCTAGGCATAACGAATACCCAACAATCGAGTCTACTAAAAAGGATTCCCCAAGTGATGAAACATGTGACTCACACTGTTATTCAGGATTCCATGCTGTAAACTATCAGGAACCAAAATATTGGTGCAGTGTTGTGTATTATGAATTAAATTCACGTATTGGTGAAGCATACTTTGCCAGTATACCCAGTATCATTGTCGATGGTTTCACTAATCCAGGTCGGGATAGTGGTCGGTTTTCCGTAGGATTTTTATCAAATATTAATAGAAGCCTGGCTGTTGAAAATGCCCGCAAACAAATTGGAAAGGAATGCTTATCGGATTGCAGTATTTTCATTCAATCCCGCGAGTGTAATGAACGTCATCATTTTCACCCAACAACTGTGATCAAAATACCTCCAGGTGGATGCTTACGCATATTTTCCAATCGTCAATTTGCTCATATTCTTAGTTATACTATATCACGAAGTGTTGAAGCTACCTATGATCTTGTACGTATGTGTACCATACGATTAAGTTTT]
consensusID : consensus_9336#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 464 fasta sequence
[GCCTGACCTCCAGAGTCACCATGAGTTAAGGCCCGTTGAAAATTGCAAATTGCCATTCAGTTCTAAGGAGACGGAAGTGTGCATTAACCCATATCATTATACTCGCGTTGATTATCCTGTCTTGCCCCCTGTATTAGTGCCTAGGCATAACGAATACCCAACAATCGAGTCTACTAAAAAGGATTGTCGATGGTTTCACTAATCCAGGTCGGGATAGTGGTCGGTTTTCCGTAGGATTTTTATCAAATATTAATAGAAGCCTGGCTGTTGAAAATGCCCGCAAACAAATTGGAAAGGGTGTTCATTTGTTTACTTTTGGTGGTGATGTCTACGCAGAATGCTTATCGGATTGCAGTATTTTCATTCAATCCCGCGAGTGTAATGAACGTCATCATTTTCACCCAACAACTGTGATCAAAATACCTCCAGGTGGATGCTTACGCATATNTTCCAATCGTCAATTT]
[+] EMBL CD195083 [GCCTGACCTCCAGAGTCACCATGAGTTAAGGCCCGTTGAAAATTGCAAATTGCCATTCAGTTCTAAGGAGACGGAAGTGTGCATTAACCCATATCATTATACTCGCGTTGATTATCCTGTCTTGCCCCCTGTATTAGTGCCTAGGCATAACGAATACCCAACAATCGAGTCTACTAAAAAGGATTGTCGATGGTTTCACTAATCCAGGTCGGGATAGTGGTCGGTTTTCCGTAGGATTTTTATCAAATATTAATAGAAGCCTGGCTGTTGAAAATGCCCGCAAACAAATTGGAAAGGGTGTTCATTTGTTTACTTTTGGTGGTGATGTCTACGCAGAATGCTTATCGGATTGCAGTATTTTCATTCAATCCCGCGAGTGTAATGAACGTCATCATTTTCACCCAACAACTGTGATCAAAATACCTCCAGGTGGATGCTTACGCATATNTTCCAATCGTCAATTT]
consensusID : consensus_9336#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 444 fasta sequence
[ATGAAACATGTGACTCACACTGTTATTCAGGATTCCATGCTGTAAACTATCAGGAACCAAAATATTGGTGCAGTGTTGTGTATTATGAATTAAATTCACGTATTGGTGAAGCATACTTTGCCAGTATACCCAGTATCATTGTCGATGGTTTCACTAATCCAGGTCGGGATAGTGGTCGGTCCGTCGTGGCGACATCGAATTGTGAATGACTCTGATCAGCGTTGATGCGTTCATAGTCTTCTTTAGCCTTGATCATATCACGATATTTATCTCGATATCGCTTAATTTCATCATCGATAATACGCGTTTGAGATTTTAGTTCAGTTGATAATTTTGATCTTTCACTTTTCCATCGTTTAAATTGTCTTCTTTCATCTTCAATAATCGATTTACCTTCGCTACCAGCGTGTATTTCGAAGGAACATGAAATTAGATTTTCAGCAT]
[+] EMBL CD192796 [ATGAAACATGTGACTCACACTGTTATTCAGGATTCCATGCTGTAAACTATCAGGAACCAAAATATTGGTGCAGTGTTGTGTATTATGAATTAAATTCACGTATTGGTGAAGCATACTTTGCCAGTATACCCAGTATCATTGTCGATGGTTTCACTAATCCAGGTCGGGATAGTGGTCGGTCCGTCGTGGCGACATCGAATTGTGAATGACTCTGATCAGCGTTGATGCGTTCATAGTCTTCTTTAGCCTTGATCATATCACGATATTTATCTCGATATCGCTTAATTTCATCATCGATAATACGCGTTTGAGATTTTAGTTCAGTTGATAATTTTGATCTTTCACTTTTCCATCGTTTAAATTGTCTTCTTTCATCTTCAATAATCGATTTACCTTCGCTACCAGCGTGTATTTCGAAGGAACATGAAATTAGATTTTCAGCAT]
[-] EMBL CD090172 [ GTGTATTATGAATTAAATTCACGTATTGGTGAAGCATACTTTGCCAGTATACCCAGTATCATTGTCGATGGTTTCACTAATCCAGGTC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9336#0 TCGGCCGCGGGGTTTCTATCGAAAGGATTTCCCATGTGATATACTGCAGAGTATGGCGTT 60
consensus_9336#2 ------------------------------------------------------------
consensus_9336#1 ------------------------------------------------------------
consensus_9336#3 ------------------------------------------------------------
consensus_9336#0 GGCCTGACCTCCAGAGTCACCATGAGTTAAGGCCTGTTGAAAATTGCAAATTGCCATTCA 120
consensus_9336#2 -GCCTGACCTCCAGAGTCACCATGAGTTAAGGCCCGTTGAAAATTGCAAATTGCCATTCA 59
consensus_9336#1 ------------------------------------------------------------
consensus_9336#3 ------------------------------------ATGAAACATGTGACTCACACTGTT 24
consensus_9336#0 GTTCTAAGGAGACGGAAGTGTGCATTAACCCATATCATTATACTCGCGTTGATTATCCTG 180
consensus_9336#2 GTTCTAAGGAGACGGAAGTGTGCATTAACCCATATCATTATACTCGCGTTGATTATCCTG 119
consensus_9336#1 ------------------------------------------CTCGCGTTGATTATCCTG 18
consensus_9336#3 ATTC--AGGATTCCATGCTGTAAACTATCAGGAACCAAAATATTGGTGCAG--TGTTGTG 80
* * * * * * **
consensus_9336#0 TCTTGCCCCCTGTATTAGTGCCTAGGCATAACGAATACCCAACAATCGAGTCTACTAAAA 240
consensus_9336#2 TCTTGCCCCCTGTATTAGTGCCTAGGCATAACGAATACCCAACAATCGAGTCTACTAAAA 179
consensus_9336#1 TCTTGCCCCCTGTATTAGTGCCTAGGCATAACGAATACCCAACAATCGAGTCTACTAAAA 78
consensus_9336#3 TATTATGAATTAAATTCACGTATTGG--TGAAGCATACTTTGCCA----GTATACCCAGT 134
* ** * *** * * ** * * * **** * * ** *** *
consensus_9336#0 AGGATTCCCCAAGTGATGAAACATGTGACTCACACTGTTATTCAGGATTCCATGCTGTAA 300
consensus_9336#2 AGGATT------------------------------------------------------ 185
consensus_9336#1 AGGATTCCCCAAGTGATGAAACATGTGACTCACACTGTTATTCAGGATTCCATGCTGTAA 138
consensus_9336#3 ATCATT------------------------------------------------------ 140
* ***
consensus_9336#0 ACTATCAGGAACCAAAATATTGGTGCAGTGTTGTGTATTATGAATTAAATTCACGTATTG 360
consensus_9336#2 ------------------------------------------------------------
consensus_9336#1 ACTATCAGGAACCAAAATATTGGTGCAGTGTTGTGTATTATGAATTAAATTCACGTATTG 198
consensus_9336#3 ------------------------------------------------------------
consensus_9336#0 GTGAAGCATACTTTGCCAGTATACCCAGTATCATTGTCGATGGTTTCACTAATCCAGGTC 420
consensus_9336#2 -----------------------------------GTCGATGGTTTCACTAATCCAGGTC 210
consensus_9336#1 GTGAAGCATACTTTGCCAGTATACCCAGTATCATTGTCGATGGTTTCACTAATCCAGGTC 258
consensus_9336#3 -----------------------------------GTCGATGGTTTCACTAATCCAGGTC 165
*************************
consensus_9336#0 GGGATAGTGGTCGGTTTTCCGTAG-------GATTTTTATCAAATATTAATAGAAGCCTG 473
consensus_9336#2 GGGATAGTGGTCGGTTTTCCGTAG-------GATTTTTATCAAATATTAATAGAAGCCTG 263
consensus_9336#1 GGGATAGTGGTCGGTTTTCCGTAG-------GATTTTTATCAAATATTAATAGAAGCCTG 311
consensus_9336#3 GGGATAGTGGTCGGTCCGTCGTGGCGACATCGAATTGTGAATGACTCTGATCAGCGTTGA 225
*************** *** * ** ** * * * ** *
consensus_9336#0 GCTGTTGAAAATGCCCGCAAACA--AATTGGAA-AGGGTGTTCATTTGTTTACTTTTGGT 530
consensus_9336#2 GCTGTTGAAAATGCCCGCAAACA--AATTGGAA-AGGGTGTTCATTTGTTTACTTTTGGT 320
consensus_9336#1 GCTGTTGAAAATGCCCGCAAACA--AATTGGAA-AGG----------------------- 345
consensus_9336#3 TGCGTTCATAGTCTTCTTTAGCCTTGATCATATCACGATATTTATCTCGATATCGCTTAA 285
*** * * * * * * ** * * *
consensus_9336#0 GGTGATGTCTACGCAGAATGCTTATCGGATTGCAGTATTTTCA-----TTCAATCCCGCG 585
consensus_9336#2 GGTGATGTCTACGCAGAATGCTTATCGGATTGCAGTATTTTCA-----TTCAATCCCGCG 375
consensus_9336#1 ----------------AATGCTTATCGGATTGCAGTATTTTCA-----TTCAATCCCGCG 384
consensus_9336#3 TTTCAT-CATCGATAATACGCGTTTGAGATTTTAGTTCAGTTGATAATTTTGATCTTTCA 344
* ** * * **** *** * ** *** *
consensus_9336#0 AGTGTA-ATGAACGTCATCATTTTCACCCAACAACTGTGATCAAAATACCTCCAGGTGGA 644
consensus_9336#2 AGTGTA-ATGAACGTCATCATTTTCACCCAACAACTGTGATCAAAATACCTCCAGGTGGA 434
consensus_9336#1 AGTGTA-ATGAACGTCATCATTTTCACCCAACAACTGTGATCAAAATACCTCCAGGTGGA 443
consensus_9336#3 CTTTTCCATCGTTTAAATTGTCTTCTTTCATCTTCAATAATCGATTTACCTTC-----GC 399
* * ** ** * *** ** * * * *** * ***** * *
consensus_9336#0 TGCTTACGCATATTTTCCA--ATCGTCAATTTGCTCATATTCTTAGTTATACTATATCAC 702
consensus_9336#2 TGCTTACGCATATNTTCCA--ATCGTCAATTT---------------------------- 464
consensus_9336#1 TGCTTACGCATATTTTCCA--ATCGTCAATTTGCTCATATTCTTAGTTATACTATATCAC 501
consensus_9336#3 TACCAGCGTGTATTTCGAAGGAACATGAAATTAGATTTTCAGCAT--------------- 444
* * ** *** * * * * * ** **
consensus_9336#0 GAGGTGTTGAAGCTACCTATGATCTTGTACGTATGTGTACCATACGATTAAGTTTTGTTA 762
consensus_9336#2 ------------------------------------------------------------
consensus_9336#1 GAAGTGTTGAAGCTACCTATGATCTTGTACGTATGTGTACCATACGATTAAGTTTT---- 557
consensus_9336#3 ------------------------------------------------------------
consensus_9336#0 AAGGTTGGGGTGCTGAATACCACCGACAGGACATTACTTCTACACCATGTTGGATAGAAA 822
consensus_9336#2 ------------------------------------------------------------
consensus_9336#1 ------------------------------------------------------------
consensus_9336#3 ------------------------------------------------------------
consensus_9336#0 TCCACTTGCGTGGTCCTTTCTTATGGCTTGATCGCGTTCTTCGTCAAATGGGTCCAAGTC 882
consensus_9336#2 ------------------------------------------------------------
consensus_9336#1 ------------------------------------------------------------
consensus_9336#3 ------------------------------------------------------------
consensus_9336#0 GAAGTCCGATCTCTTCAGTTTCCTAACTCATAAAAGCTTACTATGTCAACAGCTGTCAGT 942
consensus_9336#2 ------------------------------------------------------------
consensus_9336#1 ------------------------------------------------------------
consensus_9336#3 ------------------------------------------------------------
consensus_9336#0 CATTTCTTGTTTTATTTTACTCTATCATACACAAACATACCCTCATCACCGTCCCGCTAC 1002
consensus_9336#2 ------------------------------------------------------------
consensus_9336#1 ------------------------------------------------------------
consensus_9336#3 ------------------------------------------------------------
consensus_9336#0 ACCCATATTGTGATCATTTATTTGAGTGACAAAACTTTATCAATATTTTATTCACTCTGT 1062
consensus_9336#2 ------------------------------------------------------------
consensus_9336#1 ------------------------------------------------------------
consensus_9336#3 ------------------------------------------------------------
consensus_9336#0 GATTGTGTGGTTATTCAGTTCTTATATACCACTTACTTATTGTCAAATAAGTTTACCAAN 1122
consensus_9336#2 ------------------------------------------------------------
consensus_9336#1 ------------------------------------------------------------
consensus_9336#3 ------------------------------------------------------------
consensus_9336#0 TTTTTTTGTCTTTGTATACGCTTCCCTCACCTTTTTTTCTAATTTTTAAACAGAAGACAA 1182
consensus_9336#2 ------------------------------------------------------------
consensus_9336#1 ------------------------------------------------------------
consensus_9336#3 ------------------------------------------------------------
consensus_9336#0 TTGTA 1187
consensus_9336#2 -----
consensus_9336#1 -----
consensus_9336#3 -----
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||