cluster # 9337

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Schistosoma mansoni
cluster # 9337 cluster # 9337 Sequences # 9 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9337#0 length = 559 sequences # 3

consensus_9337#1 length = 511 sequences # 3
consensus_9337#2 length = 473 sequences # 3

consensusID : consensus_9337#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 559
fasta sequence

                              [CCATCATCAAAAAAGTGCAAGTAATTAAAGGCGATTGTCTACGCAAGATACTCAATGTCCGTTGGTCAGATACCATCAGCAACAGCCTAATGTGGGAGAGGATATACCACTTTCCAGTTGAAGAGAAAATTAGGAAAAGACGCTGGAATTGGATAGGATATAAATTACGGGAATCACCAAACTGGATCACGAAGCAAGCGCTAACTTGAAATCCTGAAGGGAAACGGAAAAGAGGAAGACGAAAGAATCGGAAGCAGACATCAAAAAGATGGATGGGAAGAAGATGGGAACAAATAGAAAGGACTGTCCAGGACAGAGCTCGATGGAGAGTGCTGTTAGGCGGCCTATGCTCCTCCACGAGGGATAACAGAAGTTTCCTAAAACAGACACTTAGGGTCATTTGACGAATTTCACCAGGAGTTTCATAACCAGTAAGCTGCCGTTTGAAAAAAGCAATATTTAAAACCATGAATTTAAATCTATCTAACATAGACAATATTTAAATTATAGAAGACTTGCTTACCCTAGTGAAAGAAACAGNCACTGTTTGATTTCAAGT]

[+] EMBL CD086205             [CCATCATCAAAAAAGTGCAAGTAATTAAAGGCGATTGTCTACGCAAGATACTCAATGTCCGTTGGTCAGATACCATCAGCAACAGCCTAATGTGGGAGAGGATATACCACTTTCCAGTTGAAGAGAAAATTAGGAAAAGACGCTGGAATTGGATAGGATATAAATTACGGGAATCACCAAACTGGATCACGAAGCAAGCGCTAACTTGAAATCCTGAAGGGAAACGGAAAAGAGGAAGACGAAAGAATCGGAAGCAGACATCAAAAAGATGGATGGGAAGAAGATGGGAACAAATAGAAAGGACTGTCCAGGACAGAGCTCGATGGAGAGTGCTGTTAGG                                                                                                                                                                                                                           ]
[+] EMBL CD086149             [                                             gtATACT GACGT CGTTGTACAGATACCATCAGCAACAGCCTAATGTGGGAGAGGATATACCACTTTCCAGTTGAAGAGAAAATTAGGAAAAGACGCTGGAATTGGATAGGATATAAATTACGGGAATCACCAAACTGGATCACGAAGCAAGCGCTAACTTGAAATCCTGAAGGGAAACGGAAAAGAGGAAGACGAAAGAATCGGAAGCAGACATCAAAAAGATGGATGGGAAGAAGATGGGAACAAATAGAAAGGACTGTCCAGGACAGAGCTCGATGGAGAGTGCTGTTAGG                                                                                                                                                                                                                           ]
[+] EMBL CD182119             [                                                                                                                                                                                                    AGCGCTAACTTGAAATCCTGAAGGGAAACGGAAAAGAGGAAGACGAAAGAATCGGAAGCAGACATCAAAAAGATGGATGGGAAGAAGATGGGAACAAATAGAAGGGACTGTCCAGGACAGAGCTCGATGAAGAGTGCTGTTAGGCGGCCTATGCTCCTCCACGAGGGATAACAGAAGTTTCCTAAAACAGACACTTAGGGTCATTTGACGAATTTCACCAGGAGTTTCATAACCAGTAAGCTGCCGTTTGAAAAAAGCAATATTTAAAACCATGAATTTAAATCTATCTAACATAGACAATATTTAAATTATAGAAGACTTGCTTACCCTAGTGAAAGAAACAGNCACTGTTTGATTTCAAGT]




>consensus_9337#0
CCATCATCAAAAAAGTGCAAGTAATTAAAGGCGATTGTCTACGCAAGATACTCAATGTCC
GTTGGTCAGATACCATCAGCAACAGCCTAATGTGGGAGAGGATATACCACTTTCCAGTTG
AAGAGAAAATTAGGAAAAGACGCTGGAATTGGATAGGATATAAATTACGGGAATCACCAA
ACTGGATCACGAAGCAAGCGCTAACTTGAAATCCTGAAGGGAAACGGAAAAGAGGAAGAC
GAAAGAATCGGAAGCAGACATCAAAAAGATGGATGGGAAGAAGATGGGAACAAATAGAAA
GGACTGTCCAGGACAGAGCTCGATGGAGAGTGCTGTTAGGCGGCCTATGCTCCTCCACGA
GGGATAACAGAAGTTTCCTAAAACAGACACTTAGGGTCATTTGACGAATTTCACCAGGAG
TTTCATAACCAGTAAGCTGCCGTTTGAAAAAAGCAATATTTAAAACCATGAATTTAAATC
TATCTAACATAGACAATATTTAAATTATAGAAGACTTGCTTACCCTAGTGAAAGAAACAG
NCACTGTTTGATTTCAAGT

consensusID : consensus_9337#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 511
fasta sequence

                              [AGTTTCATAACTGTGTTAAATAATTTCGTATAATGTTTGTGATGTCTAATAACATTTCGAGGCTACTTTCACTTAGAGTAGTCATACATTCTGTCACTGCCGTCAAATTTTAGTCGAAACCATGTACATTTATGACTCGTTAGTCGTCATGCTGTAGAAAAACGTATTACGTGTACACGAGCAATCTTAGTCCATGTCCTTACTAGACAATTCATCGTATTTAATATGTCACTTAACACGAGATAATAAGCTCTTTTACGAAACGATCACGTTATCTAAACCTAAACTTTAGTTACATTGGTGGTTACCATTTTAATTATTGTTTACTACACGCTTTGTATGTGCTGTTATCTCACGGTAAATCATGGCTCGATTTCCTTATCGTACGGAAGTCACTTGAATTCCGTCTTCGGTTTATTCACATGCAACACGGGTTTGGAAAATATCTAAACGACCTCTGAAACTCTCCACGAACCCCACGATAATGTTTGCTACTTCACATCCAAGAGCT]

[+] EMBL CD130289             [ GTTTCATAACTGTGTTAAATAATTTCGTATAATGTTTGTGATGTCTAATAACATTTCGAGGCTACTTTCACTTAGAGTAGTCATACATTCTGTCACTGCCGTCAAATTTTAGTCGAAACCATGTACATTTATGACTCGTTAGTCGTCATGCTGTAGAAAAACGTATTACGTGTACACGAGCAATCTTAGTCCATGTCCTCACTAGACAATTCATCGTATTTAATATGTCACTTAACACGAGATAATAAGCTCTTTTACGAAACGATCACGTTATCTAAACCTA                                                                                                                                                                                                                                   ]
[-] EMBL CD194864             [aacTTCATAACTGTGTTAAATAATTTCGTATAATGTTTGTGATGTCTAATAACATTTCGAGGCTACTTTCACTTAGAGTAGTCATACATTCTGTCACTGCCGTCAAATTTTAGTCGAAACCATGTACATTTATGACTCGTTAGTCGTCATGCTGTAGAAAAACGTATTACGTGTACACGAGCAATCTTAGTCCATGTCCTTACTAGACAATTCATCGTATTTAATATGTCACTTAACACGAGATAATAAGCTCTTTTACGAAACGATCACGTTATCTAAACCTAAACTTTAGTTACATTGGTGGTTACCATTTTAATTATTGTTTACTACACGCTTTGTATGTGCTGTTATCTCACGGTAAATCATGGCTCGATTTCCTTATCGTACGGAAGTCACTTGAATTCCGTCTTCGGTTTATTCACATGCAACACGGGTTTGGAAAATATCTAAACG                                                          ]
[-] EMBL CD188227             [                                                                                                              TAGTCGAAACCATGTACATTTATGACTCGTTAGTCGTCATGCTGTAGAAAAACGTATTACGTGTACACGAGCAATCTTAGTCCATGTCCTTACTAGACAATTCATCGTATTTAATATGTCACTTAACACGAGATAATAAGCTCTTTTACGAAACGATCACGTTATCTAAACCTAAACTTTAGTTACATTGGTGGTTACCATTTTAATTATTGTTTACTACACGCTTTGTATGTGCTGTTATCTCACGGTAAATCATGGCTCGATTTCCTTATCGTACGGAAGTCACTTGAATTCCGTCTTCGGTTTATTCACATGCAACACGGGTTTGGAAAATATCTAAACGACCTCTGAAACTCTCCACGAACCCCACGATAATGTTTGCTACTTCACATCCAAGAGCT]




>consensus_9337#1
AGTTTCATAACTGTGTTAAATAATTTCGTATAATGTTTGTGATGTCTAATAACATTTCGA
GGCTACTTTCACTTAGAGTAGTCATACATTCTGTCACTGCCGTCAAATTTTAGTCGAAAC
CATGTACATTTATGACTCGTTAGTCGTCATGCTGTAGAAAAACGTATTACGTGTACACGA
GCAATCTTAGTCCATGTCCTTACTAGACAATTCATCGTATTTAATATGTCACTTAACACG
AGATAATAAGCTCTTTTACGAAACGATCACGTTATCTAAACCTAAACTTTAGTTACATTG
GTGGTTACCATTTTAATTATTGTTTACTACACGCTTTGTATGTGCTGTTATCTCACGGTA
AATCATGGCTCGATTTCCTTATCGTACGGAAGTCACTTGAATTCCGTCTTCGGTTTATTC
ACATGCAACACGGGTTTGGAAAATATCTAAACGACCTCTGAAACTCTCCACGAACCCCAC
GATAATGTTTGCTACTTCACATCCAAGAGCT

consensusID : consensus_9337#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 473
fasta sequence

                              [TTGAGCAATTGGATAGTTGTATTATTAGCCTTCATTATTTAGAGTGTGGTTTATACGTCAGTATCTGGTGAAGAATTCAATTTAATTCTTAAAAATAGATGCTATGTGCATATATATGCCGCGAATAGTGCTTACAAATATTCAACTGACAATATATCTTATGATATGATTTCTACCCTTTTGTACAAAACCAAACTAACTCGTTATGTATACTTACATTTATAAACTTTACTGTTCAATAATGTCATCTATGACATAATCTCTTGTACACTAAAAAAGCTAATGGACAGTTAATAATTTTTTTTCACTAGTGAATCATACTTACTTACTTAGGCCTGTTATTCCCAATGGA-GCATAGGCCGCCGACCAGCATTCTCCAACCCACTCTGTCCTGGGCCTTCCTCTCTAGTTCTATCCAACTTCTGTTCATTCTTCTTATGTCTGTCTCAATTTCTCGGTGTAATGTGTTCTTT]

[+] EMBL CD089801             [TTGAGCAATTGGATAGTTGTATTATTAGCCTTCATTATTTAGAGTGTGGTTTATACGTCAGTATCTGGTGAAGAATTCAATTTAATTCTTAAAAATAGATGCTATGTGCATATATATGCCGCGAATAGTGCTTACAAATATTCAACTGACAATATATCTTATGATATGATTTCTACCCTTTTGTACAAAACCAAACTAACTCGTTATGTATACTTACATTTATAAACTTTACTGTTCAATAATGTCATCTATGACATAATCTCTTGTACACTAAAAAAGCTAATGGACAGTTAATAATTTTTTTTCACTAGTGAATCATACTTACTTACTTAGGCCTGTTATTCCCAATGGA GCATAGGCCGCCGACCAGCATTCTCCAACCCACTCTGTCCTGGGCCTTCCTCTCTAGTTCTATCCAACTTCTGTTCATTCTTCTTATGTCTGTCTCAATTTCTCGGTGTAATGTGTTCTT ]
[-] EMBL CD089775             [       ATTGGATAGTTGTATTATTAGCCTTCATTATGTAGAGTGTGGTTTATACGTCAGTATCTGGTGAAGAATTCAATTTAATTCTTAAAAATAGATGCTATGTGCATATATATGCCGCGAATAGTGCTTACAAATATTCAACTGACAATATATCTTATGATATGATTTCTACCCTTTTGTACAAAACCAAACTAACTCGTTATGTATACTTACATTTATAAACTTTACTGTTCAATAATGTCATCTATGACATAATCTCTTGTACACTAAAAAAGCTAATGGACAGTTAATAATTTTTTTTCACTAGTGAATCATACTTACTTACTTAGGCCTGTTATTCCCAATGGA GCATAGGCCGCCGACCAGCATTCTCCAACCCACTCTGTCCTGGGCCTTCCTCTCTAGTTCTATCCAACTTCTGTTCATTCTTCTTATGTCTGTCTCAATTTCTCGGTGTAATGTGTTCTTT]
[-] EMBL CD089759             [                               TCATAATTTAGAGTGTGGTTTATACGTCAGTATCTGGTGAAGAATTCAATTTAATTCTTAAAAATAGATGCTATGTGCATATATATGCCGCGAATAGTGCTTACAAATATTCAACTGACAATATATCTTATGATATGATTTCTACCCTTTTGTACTAAACCAAACTAACTCGTTATGTATACTTACATTTATAAACTTTACTGTTCAATAATGTCATCTATGACATAATCTCTTGTACACTAAAAAAGCTAATGGACAGTTAATAATTTTTTTTCACTAGTGAATCATACTTACTTACTTAGGCCTGTTATTCCCAATGGACGCATAGGCCGCCGACCAGCATTCTCCAACCCACTCTGTCCTGGGCCTTCCTCTCTAGTTCTATCCAACTTCTGTTCATTCTTCTTATGTCTGTCTCAATTTCTCGGTGTAATGTGTTCTTT]




>consensus_9337#2
TTGAGCAATTGGATAGTTGTATTATTAGCCTTCATTATTTAGAGTGTGGTTTATACGTCA
GTATCTGGTGAAGAATTCAATTTAATTCTTAAAAATAGATGCTATGTGCATATATATGCC
GCGAATAGTGCTTACAAATATTCAACTGACAATATATCTTATGATATGATTTCTACCCTT
TTGTACAAAACCAAACTAACTCGTTATGTATACTTACATTTATAAACTTTACTGTTCAAT
AATGTCATCTATGACATAATCTCTTGTACACTAAAAAAGCTAATGGACAGTTAATAATTT
TTTTTCACTAGTGAATCATACTTACTTACTTAGGCCTGTTATTCCCAATGGAGCATAGGC
CGCCGACCAGCATTCTCCAACCCACTCTGTCCTGGGCCTTCCTCTCTAGTTCTATCCAAC
TTCTGTTCATTCTTCTTATGTCTGTCTCAATTTCTCGGTGTAATGTGTTCTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9337#1      --------------AGTTTCATAACTGTGTTAAATAATTT--------CGTATAATGTTT 38
consensus_9337#2      ----------------TTGAGCAATTGGAT--AGTTGTAT--------TAT-TAGCCTTC 33
consensus_9337#0      CCATCATCAAAAAAGTGCAAGTAATTAAAGGCGATTGTCTACGCAAGATACTCAATGTCC 60
                                            ** *        *  * *             *   *  

consensus_9337#1      GTGATGTCTAATAACATTTCGAGGCTACTTTCACTTAGAGTAGTCATACATTCTGTCACT 98
consensus_9337#2      ATTATTTAGAGTGTGGTTTATACGTCAGTATCTGGTGAAGAATTCA---ATTTAATTCTT 90
consensus_9337#0      GTTGGTCAGATACCATCAGCAACAGCCTAATGTGGGAGAGGATATAC-CACTTTCCAGTT 119
                       *       *           *        *       ** *   *   * *       *

consensus_9337#1      GCCGTCAAATTTTAGTCGAAACCATGTACATT---TATGACTCGTTAGTCGTCATGCTGT 155
consensus_9337#2      AAAAATAGATGCTATGTGCATATATATGCCGCGAATAGTGCTTACAAATATTCAACTGAC 150
consensus_9337#0      GAAGAGAAA-ATTAGGAAAAGACGCTGGAATTGGATAGGATATAAATTACGGGAATCACC 178
                            * *   **     *               **                *      

consensus_9337#1      AGAAAAACGTATTACGTGTACACGAGCA----ATCTTAGTCCATGTCCTTACTAGACAAT 211
consensus_9337#2      AATATATCTTATGATATGATTTCTACC------CTTTTGTACAAAACCAAACTAACTCGT 204
consensus_9337#0      AAACTGGATCACGAAGCAAGCGCTAACTTGAAATCCTGAAGGGAAACGGAAAAGAGGAAG 238
                      *         *  *        * * *         *         *   *         

consensus_9337#1      TCATCGTATTTA-ATATGTCACTTAACACGAGATA----ATAAGCTCTTTTACGAAACGA 266
consensus_9337#2      TATGTATACTTACATTTATAAACTT-TACTGTTCA----ATAATGTCATCTATGACATAA 259
consensus_9337#0      ACGAAAGAATCGGAAGCAGACATCAAAAAGATGGATGGGAAGAAGATGGGAACAAATAGA 298
                             * *   *             *      *    *  *        *  *    *

consensus_9337#1      TCACGTTATCTAAACCTAAACTTTAGTTACA-T--TGGTGG-----TTACCATTTTAATT 318
consensus_9337#2      TCTC-TTGTACACTAAAAAAGCTAATGGACAGT--TAATAA-----TTTT--TTTTCACT 309
consensus_9337#0      AAGGACTGTCCAGGACAGAGCTCGATGGAGAGTGCTGTTAGGCGGCCTATGCTCCTCCAC 358
                            * *  *      *     *   * * *  *  *        *    *  *    

consensus_9337#1      ATTGTTTACTACACGCTTTGTATGTG-----CT----GTTATCTCACGG--TAAATCATG 367
consensus_9337#2      AGTGAATCATACTTACTTACTTAGGC-----CT----GTTAT-TCCCAA--TGGAGCATA 357
consensus_9337#0      GAGGGATAACAGAAGTTTCCTAAAACAGACACTTAGGGTCATTTGACGAATTTCACCAGG 418
                         *  *   *     **  *          **    ** ** *  *    *  * **  

consensus_9337#1      GCTCGATTTCCTTATCGTACGGAAGTCACTTGAATTCCGTCTTCGGTTTATTCACATGCA 427
consensus_9337#2      GGCCGCCGACC--AGCATTCTCCAACC-----CACTCTGTCCTGGGCCT-------TCCT 403
consensus_9337#0      AGTTTCATAACC-AGTAAGCTGCCGTTTGAAAAAAGCAATATTTAAAACCATGAATTTAA 477
                                *  *     *             *  *  *  *             *   

consensus_9337#1      ACACGGGTTTGGAAAATATCTAAACGACCTCTGAAACTCTCCACGAACCCCACGATAATG 487
consensus_9337#2      CTCTAGTTCTATCCAACTTCTGTTCATTCTTCTTATGTCTGTCTCAATTTCTCGGTGTAA 463
consensus_9337#0      ATCTA-TCTAACATAGACAATATTTAAATTATAGAAGACTTGCTTACCCTAGTGAAAGAA 536
                                    *     *        *    *   **     *       *      

consensus_9337#1      TTTGCTACTTCACATCCAAGAGCT 511
consensus_9337#2      TGTGTTCTTT-------------- 473
consensus_9337#0      ACAGNCACTGTTTGATTTCAAGT- 559
                         *    *