cluster # 935

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Schistosoma mansoni
cluster # 935 cluster # 935 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_935#0 length = 485 sequences # 1

consensus_935#1 length = 299 sequences # 1

consensusID : consensus_935#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 485
fasta sequence

                              [TAGATATGAAAAAGAAAATAGGAAATAATTCCAGTCAAACACGCATAAATTTGAGTGCATCTGTGTGCGTGTGATCAGTTAGAAGGGGAGGCGGTAAATATCTCAGTCGAAAGTGTTTTGTTATTGTCATGATAAATGGTCATCTTTTGTGAAATTCTACGCACATGTGTTATAACAAAAATTCAGCCACATAATAGTGCATGTGCGTGTGTAAATGAGGAAGATACAAAGTTGTCTTAATGATAGAGGAAAAAAGTGTGCGTGAGCAGTTTATTTGTTACATTTATTATTACTATTACCATTATTAATGTTGCTGTTTGCAGCGGTAGATATATGACTATTTAATGTACGCCGCTTTTTTGGTTGATGTGAATAAATAGTGAAATAAAAGAGCGAGGAATAAGTCCTGACCTGATCTAGCATTTTTTCCTCAATATAAGACATANATGTAAAGAATGAATAAGCAGGATAATGAAGGAGAAAAT]

[+] EMBL CD158942             [TAGATATGAAAAAGAAAATAGGAAATAATTCCAGTCAAACACGCATAAATTTGAGTGCATCTGTGTGCGTGTGATCAGTTAGAAGGGGAGGCGGTAAATATCTCAGTCGAAAGTGTTTTGTTATTGTCATGATAAATGGTCATCTTTTGTGAAATTCTACGCACATGTGTTATAACAAAAATTCAGCCACATAATAGTGCATGTGCGTGTGTAAATGAGGAAGATACAAAGTTGTCTTAATGATAGAGGAAAAAAGTGTGCGTGAGCAGTTTATTTGTTACATTTATTATTACTATTACCATTATTAATGTTGCTGTTTGCAGCGGTAGATATATGACTATTTAATGTACGCCGCTTTTTTGGTTGATGTGAATAAATAGTGAAATAAAAGAGCGAGGAATAAGTCCTGACCTGATCTAGCATTTTTTCCTCAATATAAGACATANATGTAAAGAATGAATAAGCAGGATAATGAAGGAGAAAAT]




>consensus_935#0
TAGATATGAAAAAGAAAATAGGAAATAATTCCAGTCAAACACGCATAAATTTGAGTGCAT
CTGTGTGCGTGTGATCAGTTAGAAGGGGAGGCGGTAAATATCTCAGTCGAAAGTGTTTTG
TTATTGTCATGATAAATGGTCATCTTTTGTGAAATTCTACGCACATGTGTTATAACAAAA
ATTCAGCCACATAATAGTGCATGTGCGTGTGTAAATGAGGAAGATACAAAGTTGTCTTAA
TGATAGAGGAAAAAAGTGTGCGTGAGCAGTTTATTTGTTACATTTATTATTACTATTACC
ATTATTAATGTTGCTGTTTGCAGCGGTAGATATATGACTATTTAATGTACGCCGCTTTTT
TGGTTGATGTGAATAAATAGTGAAATAAAAGAGCGAGGAATAAGTCCTGACCTGATCTAG
CATTTTTTCCTCAATATAAGACATANATGTAAAGAATGAATAAGCAGGATAATGAAGGAG
AAAAT

consensusID : consensus_935#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 299
fasta sequence

                              [AATATCTCAGTCGAAAGTGTTTTGTTATTGTCATGATAAATGGTCATCTTTTGTGAAATTCTATGCACATGTGTTATAACAAAAATTCAGCCACATAATAGTGCATGTGCGTGTGTAAATGAGGAAGATACAAAGTTGTCTTAATGATAGAGGAAAAAAGTGTGCGTGAGCAGTTTATTTGTTACATTTATTATTACTATTACCATTATTAATGTTGCTGTTTGCAGCGGTAGATATATGACTATTTAATGTACGCCGCTTTTTTGGTTGATGTGAATAAATAGTCTGATTGCCTTCCA]

[-] EMBL CD178422             [AATATCTCAGTCGAAAGTGTTTTGTTATTGTCATGATAAATGGTCATCTTTTGTGAAATTCTATGCACATGTGTTATAACAAAAATTCAGCCACATAATAGTGCATGTGCGTGTGTAAATGAGGAAGATACAAAGTTGTCTTAATGATAGAGGAAAAAAGTGTGCGTGAGCAGTTTATTTGTTACATTTATTATTACTATTACCATTATTAATGTTGCTGTTTGCAGCGGTAGATATATGACTATTTAATGTACGCCGCTTTTTTGGTTGATGTGAATAAATAGTCTGATTGCCTTCCA]




>consensus_935#1
AATATCTCAGTCGAAAGTGTTTTGTTATTGTCATGATAAATGGTCATCTTTTGTGAAATT
CTATGCACATGTGTTATAACAAAAATTCAGCCACATAATAGTGCATGTGCGTGTGTAAAT
GAGGAAGATACAAAGTTGTCTTAATGATAGAGGAAAAAAGTGTGCGTGAGCAGTTTATTT
GTTACATTTATTATTACTATTACCATTATTAATGTTGCTGTTTGCAGCGGTAGATATATG
ACTATTTAATGTACGCCGCTTTTTTGGTTGATGTGAATAAATAGTCTGATTGCCTTCCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_935#0      TAGATATGAAAAAGAAAATAGGAAATAATTCCAGTCAAACACGCATAAATTTGAGTGCAT 60
consensus_935#1      ------------------------------------------------------------
                                                                                 

consensus_935#0      CTGTGTGCGTGTGATCAGTTAGAAGGGGAGGCGGTAAATATCTCAGTCGAAAGTGTTTTG 120
consensus_935#1      ------------------------------------AATATCTCAGTCGAAAGTGTTTTG 24
                                                         ************************

consensus_935#0      TTATTGTCATGATAAATGGTCATCTTTTGTGAAATTCTACGCACATGTGTTATAACAAAA 180
consensus_935#1      TTATTGTCATGATAAATGGTCATCTTTTGTGAAATTCTATGCACATGTGTTATAACAAAA 84
                     *************************************** ********************

consensus_935#0      ATTCAGCCACATAATAGTGCATGTGCGTGTGTAAATGAGGAAGATACAAAGTTGTCTTAA 240
consensus_935#1      ATTCAGCCACATAATAGTGCATGTGCGTGTGTAAATGAGGAAGATACAAAGTTGTCTTAA 144
                     ************************************************************

consensus_935#0      TGATAGAGGAAAAAAGTGTGCGTGAGCAGTTTATTTGTTACATTTATTATTACTATTACC 300
consensus_935#1      TGATAGAGGAAAAAAGTGTGCGTGAGCAGTTTATTTGTTACATTTATTATTACTATTACC 204
                     ************************************************************

consensus_935#0      ATTATTAATGTTGCTGTTTGCAGCGGTAGATATATGACTATTTAATGTACGCCGCTTTTT 360
consensus_935#1      ATTATTAATGTTGCTGTTTGCAGCGGTAGATATATGACTATTTAATGTACGCCGCTTTTT 264
                     ************************************************************

consensus_935#0      TGGTTGATGTGAATAAATAGTGAAATAAAAGAGCGAGGAATAAGTCCTGACCTGATCTAG 420
consensus_935#1      TGGTTGATGTGAATAAATAGTCTGATTGCCTTCCA------------------------- 299
                     *********************   **       *                          

consensus_935#0      CATTTTTTCCTCAATATAAGACATANATGTAAAGAATGAATAAGCAGGATAATGAAGGAG 480
consensus_935#1      ------------------------------------------------------------
                                                                                 

consensus_935#0      AAAAT 485
consensus_935#1      -----